These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1517 fasta sequence [TTTTGCTTACTCTCTCCGCCCTCCTAAACCCTACGACCATGCCGACCCTCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGGGGCACTGCGATACGCCGTGCTGGGCGGGGTTCGGTCGCTCTCATCCCTCCAGCCGTCATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCGAGGAGGTGCTGGTGGAAGGCAAGGCCAGCGCGCGCGCCGCCGTGCTCAACCGCCCCGGCCATCTCAACGCGCTCACGACCACCATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACAACCCTGATATTGGCTTTGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGGATGTTGTTAGGTTGCACCAGCTTATAAGTGAAGGAAAGTTGGACGAGTGTAAGGATTTCTTCAAGACTTTGTACAGTTTTATTTATGTTCTGGGCACATACTTGAAGCCACATGTTGCCATTCTTGATGGTGTTACCATGGGTGGAGGTGGAGGTGTTTCCATTCCCGGAACATTTCGCATTGTCACTGATAGAACGGTATTTGCAACTCCAGAAGTACATATTGGCTTCCATCCTGATGCTGCTGCCTCCTTTTATTTGTCCCATCTGACTGGTCATGTTGGTGAATATTTGGCCTTGACTGGTGAAAAACTCAATGGAGTGGATATGATCGCACTTGGCCTTGCTACACACTATTCCATGAGTGATCGGTTGAATCTGGTTGATGAACGCCTTGCAACATTGTTAACTGATGATCCATCAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGCATTGTTCATAGGCTGGAGGTTATAGATAAATGTTTCAGCCTTGAAACAGTCGAGGAGATTGTGGATGCCATGGAAATTGAAGCAGCTAGGTTAAATGAAGATTGGTCTACCTTGGCCCTGAAACGGTTGAAAGAGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAGGTAGATACCAGACACTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAAGCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTATACTATGGCAAAGCGTGTCCAAGTCGC] [+] EMBL AK068963 [TTTTGCTTACTCTCTCCGCCCTCCTAAACCCTACGACCATGCCGACCCTCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGGGGCACTGCGATACGCCGTGCTGGGCGGGGTTCGGTCGCTCTCATCCCTCCAGCCGTCATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCGAGGAGGTGCTGGTGGAAGGCAAGGCCAGCGCGCGCGCCGCCGTGCTCAACCGCCCCGGCCATCTCAACGCGCTCACGACCACCATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACAACCCTGATATTGGCTTTGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGGATGTTGTTAGGTTGCACCAGCTTATAAGTGAAGGAAAGTTGGACGAGTGTAAGGATTTCTTCAAGACTTTGTACAGTTTTATTTATGTTCTGGGCACATACTTGAAGCCACATGTTGCCATTCTTGATGGTGTTACCATGGGTGGAGGTGGAGGTGTTTCCATTCCCGGAACATTTCGCATTGTCACTGATAGAACGGTATTTGCAACTCCAGAAGTACATATTGGCTTCCATCCTGATGCTGCTGCCTCCTTTTATTTGTCCCATCTGACTGGTCATGTTGGTGAATATTTGGCCTTGACTGGTGAAAAACTCAATGGAGTGGATATGATCGCACTTGGCCTTGCTACACACTATTCCATGAGTGATCGGTTGAATCTGGTTGATGAACGCCTTGCAACATTGTTAACTGATGATCCATCAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGCATTGTTCATAGGCTGGAGGTTATAGATAAATGTTTCAGCCTTGAAACAGTCGAGGAGATTGTGGATGCCATGGAAATTGAAGCAGCTAGGTTAAATGAAGATTGGTCTACCTTGGCCCTGAAACGGTTGAAAGAGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAGGTAGATACCAGACACTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAAGCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTT ] [+] EMBL AK099250 [ CGCCCTCCTAAACCCTACGACCATGCCGACCCTCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGGGGCACTGCGATACGCCGTGCTGGGCGGGGTTCGGTCGCTCTCATCCCTCCAGCCGTCATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCGAGGAGGTGCTGGTGGAAGGCAAGGCCAGCGCGCGCGCCGCCGTGCTCAACCGCCCCGGCCATCTCAACGCGCTCACGACCACCATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACAACCCTGATATTGGCTTTGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGGATGTTGTTAGGTTGCACCAGCTTATAAGTGAAGGAAAGTTGGACGAGTGTAAGGATTTCTTCAAGACTTTGTACAGTTTTATTTATGTTCTGGGCACATACTTGAAGCCACATGTTGCCATTCTTGATGGTGTTACCATGGGTGGAGGTGGAGGTGTTTCCATTCCCGGAACATTTCGCATTGTCACTGATAGAACGGTATTTGCAACTCCAGAAGTACATATTGGCTTCCATCCTGATGCTGCTGCCTCCTTTTATTTGTCCCATCTGACTGGTCATGTTGGTGAATATTTGGCCTTGACTGGTGAAAAACTCAATGGAGTGGATATGATCGCACTTGGCCTTGCTACACACTATTCCATGAGTGATCGGTTGAATCTGGTTGATGAACGCCTTGCAACATTGTTAACTGATGATCCATCAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGCATTGTTCATAGGCTGGAGGTTATAGATAAATGTTTCAGCCTTGAAACAGTCGAGGAGATTGTGGATGCCATGGAAATTGAAGCAGCTAGGTTAAATGAAGATTGGTCTACCTTGGCCCTGAAACGGTTGAAAGAGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAGGTAGATACCAGACACTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAAGCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTT ] [+] EMBL OSC101762 [ CCTACGACCATGCCGACCCTCGCCGCCGCCGNCGCCGCCGCCCGCCGCGCCGGGGNGACACTGCGATACGCCGTGCTGGGCGGGGTTCGGTCGCTCTCATCCCTCCAGCCGTNATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCAAGGAGGTGCTGGTGGAAGGCAAGGCCAGCGNGCGNGCCGNCGTGCTCAACCGNCNNGGNCATCTCAACGTGCTCANGACCACTATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACAANCNTGATATTGGCTTTNTCATGATGA ] [+] EMBL CB659396 [ CCATGCCGACCCTCGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGGCGGGGCACTGCGATACGCCGTGCTGGGCGGGGTTCGGTCGCTCTCATCCCTCCAGCCGTCATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCGAGGAGGTGCTGGTGGAAGGCAAGGCCAGCGCGCGCGCCGCCGTGCTCAACCGCCCCGGCCATCTCAACGCGCTCACGACCACCATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACAACCCTGATATTGGCTTTGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGGATGTTGTTAGGTTGCACCAGCTTATAAGTGAAGGAAAGTTGGACGAGTGTAAGGATTTCTTCAAGACTTTGTACAGTTTTATTTATGTTCTGGGCACATACTTGAAGCCACATGTTGCCATTCTTGATGGTGTTACCATGGGTGGAGGTGGAGGTGTTTCCATTCCCGGAACATTTCGCATTGTCACTGATAGAACGGTATTTGCAACTCCAGAAGTACATATTGGCTTCCATCCTGATGCTGCTGCCTCCTTTTATTTGTCCCATCTGACTGGTCATGTTGGTGAATATTTGGCCTTGACTGGTGAAAAACTCAATGGAGTGGATATGATCGCACTTGGCCTTGCTACACACTATTCCATGAGTGATCGGTTGAATCTGGTTGATGAACGCCTTGCAACATTGTTAACTGATGATCCATCAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGC ] [-] EMBL CB659397 [ CGCCTTGCAACATTGTTAACTGATGATCCATCAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGCATTGTTCATAGGCTGGAGGTTATAGATAAATGTTTCAGCCTTGAAACAGTCGAGGAGATTGTGGATGCCATGGAAATTGAAGCAGCTAGGTTAAATGAAGATTGGTCTACCTTGGCCCTGAAACGGTTGAAAGAGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAGGTAGATACCAGACACTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAAGCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTATACTATGGCAAAGCGTGTCCAAGTCGC] [+] EMBL AA749717 [ ATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTT ] [+] EMBL C96621 [ AGTGGGATCCACCTGCCCTTGAGTNTGTATCAGCGGANATGGTCGATTCTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAANCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCTNACTTTCATAAATTAATGCCTTCGCTTNATTTCATTTATACTAaaa ] consensusID : consensus_11148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 71 fasta sequence [CATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF329644 [CATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11148#0 TTTTGCTTACTCTCTCCGCCCTCCTAAACCCTACGACCATGCCGACCCTCGCCGCCGCCG 60 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 CCGCCGCCGCCCGCCGCGCCGGCGGGGCACTGCGATACGCCGTGCTGGGCGGGGTTCGGT 120 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 CGCTCTCATCCCTCCAGCCGTCATCCTCCTCCTCCGCCGCAGCCGCCGCCAGCGAGGAGG 180 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 TGCTGGTGGAAGGCAAGGCCAGCGCGCGCGCCGCCGTGCTCAACCGCCCCGGCCATCTCA 240 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 ACGCGCTCACGACCACCATGGGAGCTAGGCTCAATAAGTTTTATATGTCATGGGAGGACA 300 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 ACCCTGATATTGGCTTTGTCATGATGAAGGGCAGCGGCCGAGCATTCTGTGCTGGTGGGG 360 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 ATGTTGTTAGGTTGCACCAGCTTATAAGTGAAGGAAAGTTGGACGAGTGTAAGGATTTCT 420 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 TCAAGACTTTGTACAGTTTTATTTATGTTCTGGGCACATACTTGAAGCCACATGTTGCCA 480 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 TTCTTGATGGTGTTACCATGGGTGGAGGTGGAGGTGTTTCCATTCCCGGAACATTTCGCA 540 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 TTGTCACTGATAGAACGGTATTTGCAACTCCAGAAGTACATATTGGCTTCCATCCTGATG 600 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 CTGCTGCCTCCTTTTATTTGTCCCATCTGACTGGTCATGTTGGTGAATATTTGGCCTTGA 660 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 CTGGTGAAAAACTCAATGGAGTGGATATGATCGCACTTGGCCTTGCTACACACTATTCCA 720 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 TGAGTGATCGGTTGAATCTGGTTGATGAACGCCTTGCAACATTGTTAACTGATGATCCAT 780 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 CAGTTATTGATACTTCCCTTACACATTATGGAGATCTTGTGTATCCAGATAAGAGTAGCA 840 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 TTGTTCATAGGCTGGAGGTTATAGATAAATGTTTCAGCCTTGAAACAGTCGAGGAGATTG 900 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 TGGATGCCATGGAAATTGAAGCAGCTAGGTTAAATGAAGATTGGTCTACCTTGGCCCTGA 960 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 AACGGTTGAAAGAGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAG 1020 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 GTAGATACCAGACACTTGATGAATGCCTTGTGCGTGAATACCGCATGTCTATCAATGGAA 1080 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 TCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGTGGAGAAGG 1140 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 ACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATT 1200 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 CTTACTTTGCTCCCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAG 1260 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 AGGCATTTGTATGATGACTCTGCATGACAATTCCAAGTAGCGCTTTTGTTTGAAGCCTTA 1320 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 TAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAGGATTCTCA 1380 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 ATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAAC 1440 consensus_11148#1 ------------------------------------------------------------ consensus_11148#0 TCCTACCATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTATACTATGGCA 1500 consensus_11148#1 ------CATTCTCACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTAAAAAAAAAAA 54 ******************************************** * * * consensus_11148#0 AAGCGTGTCCAAGTCGC 1517 consensus_11148#1 AAAAAAAAAAAAAAAAA 71 ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||