These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 973 fasta sequence [CCCGCAAGTCTCCCTCTCGCACCACAACAAACGCGCCTCCTCCATCTCGAACTCTCCAGTCTCCACCACCCCCGTCCCCGTCTCTCGATCGCCATGGCCTCCGCCCTCGCCGCCTCCACCGCCGTCTGCTCCTCTCCCCTCGCATCCGCCTCCGCCTCCGCTTCGTCCGCGCGCCGCCTGCGCGCGGTCCCGCCCTCCCGCGGCATCCGCTACCAGGCCCTCCGCGCGGACTCCGGTTTCGCCGGGAACCGCCGGGGTGGCGGCCGTGGAGCGTCGGTAGTGTGCGCGGTCCAGGGCCAGGACACATCCATCCAAGTTCCAGAAGTGACGAAGTCAACATGGCAATCACTTGTTATGGAGAGCGAGCTTCCTGTCCTTGTTGGATACTGGGCTACATGGTGTGGGCCTTGCAAAATGATTGATCCCGTTGTTGGCAAGCTCTCCAAGGAGTATGAAGGGAAACTGAAATGCTACAAGCTCAATACTGACGAGAATCCAGATATAGCAAGTCAGTATGGCGTCCGGAGCATCCCAACCATGATGATA-TTCAAGAACGGAGAGA-AGAAAGATGCAGTGATTGGAGCTGTG-CCTGAGAGTACACTGATCGCATCCATTGAGAAATTTGT-CGAGAGGTAAAATGCAAATG-CCAAAACTGAACCCTTTGAACAGTTAG-CATTACACGTCCAACTTTCAGAACTTCAGATCA-TTCAAGAGTCGAAGCCATGCTCAATGTTTATATGCCTACGTGTATAGATAGTATTGGGAATCGCTTTCGGTAGCATCCAATAAATGTAATTCGAGGATGCAGGTTGAATGATGAAATCATGAAAGTCGCAAGGAAGCCTGGTTTCATGTGTCCATTCTTTTGGCTGTAGATATGTATGGTATTGACTGTTAAGATACATATTACCCTTTTACACTATATTATTGCTTATGATATGTTCCTTCCAAATAGGTGCTTGAGGTAAAAAAA] [+] EMBL AK069195 [CCCGCAAGTCTCCCTCTCGCACCACAACAAACGCGCCTCCTCCATCTCGAACTCTCCAGTCTCCACCACCCCCGTCCCCGTCTCTCGATCGCCATGGCCTCCGCCCTCGCCGCCTCCACCGCCGTCTGCTCCTCTCCCCTCGCATCCGCCTCCGCCTCCGCTTCGTCCGCGCGCCGCCTGCGCGCGGTCCCGCCCTCCCGCGGCATCCGCTACCAGGCCCTCCGCGCGGACTCCGGTTTCGCCGGGAACCGCCGGGGTGGCGGCCGTGGAGCGTCGGTAGTGTGCGCGGTCCAGGGCCAGGACACATCCATCCAAGTTCCAGAAGTGACGAAGTCAACATGGCAATCACTTGTTATGGAGAGCGAGCTTCCTGTCCTTGTTGGATACTGGGCTACATGGTGTGGGCCTTGCAAAATGATTGATCCCGTTGTTGGCAAGCTCTCCAAGGAGTATGAAGGGAAACTGAAATGCTACAAGCTCAATACTGACGAGAATCCAGATATAGCAAGTCAGTATGGCGTCCGGAGCATCCCAACCATGATGATA TTCAAGAACGGAGAGA AGAAAGATGCAGTGATTGGAGCTGTG CCTGAGAGTACACTGATCGCATCCATTGAGAAATTTGT CGAGAGGTAAAATGCAAATG CCAAAACTGAACCCTTTGAACAGTTAG CATTACACGTCCAACTTTCAGAACTTCAGATCA TTCAAGAGTCGAAGCCATGCTCAATGTTTATATGCCTACGTGTATAGATAGTATTGGGAATCGCTTTCGGTAGCATCCAATAAATGTAATTCGAGGATGCAGGTTGAATGATGAAATCATGAAAGTCGCAAGGAAGCCTGGTTTCATGTGTCCATTCTTTTGGCTGTAGATATGTATGGTATTGACTGTTAAGATACATATTACCCTTTTACACTATATTATTGCTTATGATA ] [+] EMBL AU063478 [ ACTCTCCAGTCTCCACCACCCCCGTCCCCGTCTCTNGATCGCCATGGCCTCCGCCCTCGCCGCCTCCACCGCCGTCTGCTCCTCTCCCCTCGCATCCGCCTCCGNCTCCGCTTCGTCCGCGCGCCGCCTGCGCG GTNCCCGCCCTCCCGCGGCATCCGCTACCAGGCCCTCCGCGCGGACTCCGGTTTCGCCGGGAACCGCCGGGGTGGCGGCCGTGGAGCGTCGGTAGTNTNCGCGGTCCAGGGCCAAGACANATCCATCCAAGTTTCAGAAGTTACGA NAACATGGCAAT AATTTNTATGGAGAGCGAG TTTCTGTCC ] [+] EMBL AU197521 [ TATGGAGAGCGAGCTTCCTGTCCTTGTTGGATACTGGGCTACATGGTGTGGGCCTTGCAAAATGATTGATCCCGTTGTTGGCAAGCTCTCCAAGGAGTATGAAGGGAAACTGAAATGCTACAAGCTCAATACTGACGAGAATCCAGATATAGCAAGTCAGTATGGCGTCCGGAGCATCCCAACCATGATGATA TTCAAGAACGGAGAGA AGAAAGATGCAGTGATTGGAGCTGTG CTGAGAGTACACTGATCGCATCCATTGAGAAATTTGT CGAGAGGTAAAATGCAAATG CCAAAACTGAACCCTTTGAACAGTTAG CATTACACGTCCAACTTTCAGAACTTCAGATCA TTCAAGAGTCGAAGCCATGCTCAATGTTTATATGCCTACGTGTATAGATAGTATTTGGGATCGCTTTCGGTGGCATCCCATNAATG ] [+] EMBL AU100989 [ ATGATGATATTTCAAGAACGGAGAGATNGAAAGATGCAGTGATTGGAGCTNTGCCCTGAGAGTACACTGATCGCATCCATTGAGAAATTTNTCCGAGAGGTAAAATGCAAATGCCCAAAACTGAACCCTTTGAACAGTTAGNCATTACACGTCCAACTTTCAGAACTTCAGATCATTTCAAGAGTCGAAGCCATGCTCAATGTTTATATGCCTACGTGTATAGATAGTATTGGGAATCGCTTTCGGTAGCATCCAATAAATGTAATTCGAGGATGCAGGTTGAATGATGAAATCATGAAAGTCGCAAGGAAGCCTGGTTTCATGTGTCCATTCTTTTGGCTNTAGATATGTATGGTATTGACTGTTAAGATACATATTACCCTTTTACACTATATTATTGCTTATGATATGTTCCTTCCAAATAGGTGCTTGAGGTAAAAAAA] consensusID : consensus_11155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 863 fasta sequence [GTCGCCTCCTCCCGCAGTGCCGGGGCGTCCGCGCTGCCCCGGTCGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCAGGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGAGAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGATAGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCTCAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAATGATGATATTCAAGAACGGTGATAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCACCCTGGTCAGCAATATCAACAAATACATCGGGAGGTAAAATGTCAGGATGTATATTAGCTAGGCAGTTGGGCTTGAACCTTGACGCCCAGATGGATGTATAGGCAAGTATGAACTGCATTGGTTTTAGGACAATGGGCAGGTAAATGTGTGGATGGTGGAACCCCGGGAAGTGGTGAGGGATGTGATCATAGAAATGGCGGTTGCCAGTTGGATTATACAGATGTAAGTTATACCCGAATTTGATCTTATGGTGCAGTGCGGCGCGGCCTTTTTAGTTTTTGTTTCTCTTCTACTCTCGATATTAATGTGGACCACAGTGTTTCCTAGTGCCACTNTTGTCCTAATAGTGATGAAGTTATATTTACATGTTGGATGTTTGAACATATTAAAGAAGATAAGATTGAATTTTATTTATATGTCATATAGTATATATTATTAGAGATTGATGATACTAATAAGA] [+] EMBL CA756941 [GTCGCCTCCTCCCGCAGTGCCGGGGCGTCCGCGCTGCCCCGGTCGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCAGGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGAGAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGATAGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCTCAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAATGATGATATTCAAGAACGGTGATAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCACCCTGGTCAGCAATATCAACAAATACATCGGGAGGTAAAATGTCAGGATGTATATTAGCTAGGCAGTTGGGCTTGAACCTTGACGCCCAGATGGATGTATAGGCAAGTATGAACTGCATTGGTTTTAGGACAATGGGCAGGTAAATGTGTGGATGGTGGAACCCCGGGAAGTGGTGAGGGATGTGATCATAGAAATGGCGGTTGCCAGTTGGATTATACAGATGTAAGTTATACCCGAATTTGATCTTATGGTGCAGTGCGGCGCGGCCTTTTTAGTTTTTGTTTCTCTTCTACTCTCGATATTAATGTGGACCACAGTGTTTCCTAGTGCCACTNTTGTCCTAATAGTGATGAAGTTATATTTACATGTTGGATGTTTGAACATATTAAAGAAGATAAGATTGAATTTTATTTATATGTCATATAGTATATATTATTAGAGATTGATGATACTAATAAGA] consensusID : consensus_11155#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 826 fasta sequence [CGTCGCCTTCCTCACCGAACCCGCAACCGCCACCGCCACCGCCACCGCCCGTCCACATCCGCCGGCGCCGATGGCCTCCTCCGCCCTCGCCGTCTCCGTCGCCAAGCCAGCCGCGTCTCCTCCCGTCGCCGTCGCCGCGGTAACCCCGCAGCGTCGCCTCCTCCCGCAGTGCCGGGGCGTCCGCGCTGCCCCGGTCGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCAGGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGAGAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGATAGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCTCAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAATGATGATATTCAAGAACGGTGAGAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCACCCTGGTCAGCAGCATCGACAAATACATCGGGAGGTAAAATGTCAGGTTGAATATTTTCTAGGCAGTTGGGCTTCAACCTTCACGCCCAGATGGATATATTGTCATCTATGAACTCCATTTCTTTTCGAGAATAGGCAGGAGAATCGTAAATTATGGAACCCCGGTTTGGTAGTTGTATGTACATAATAATGTGATAACCGCTAATAAATGCAATTCAAGGCTGAGCCCTGCGTGGCCTTCTGGATCAAAAAAAAAAAAGGTTGCTTCGAGT] [+] EMBL AK099517 [CGTCGCCTTCCTCACCGAACCCGCAACCGCCACCGCCACCGCCACCGCCCGTCCACATCCGCCGGCGCCGATGGCCTCCTCCGCCCTCGCCGTCTCCGTCGCCAAGCCAGCCGCGTCTCCTCCCGTCGCCGTCGCCGCGGTAACCCCGCAGCGTCGCCTCCTCCCGCAGTGCCGGGGCGTCCGCGCTGCCCCGGTCGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCAGGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGAGAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGATAGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCTCAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAATGATGATATTCAAGAACGGTGAGAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCACCCTGGTCAGCAGCATCGACAAATACATCGGGAGGTAAAATGTCAGGTTGAATATTTTCTAGGCAGTTGGGCTTCAACCTTCACGCCCAGATGGATATATTGTCATCTATGAACTCCATTTCTTTTCGAGAATAGGCAGGAGAATCGTAAATTATGGAACCCCGGTTTGGTAGTTGTATGTACATAATAATGTGATAACCGCTAATAAATGCAATTCAAGGCTGAGCCCTGCGTGGCCTTCTGGATCGAAGGTATGGAAGGTTGCTTCGAGT] [+] EMBL CF329078 [ cAATACATCGGGAGGTAAAATGTCAGGTTGAATATTTTCTAGGCAGTTGGGCTTCAACCTTCACGCCCAGATGGATATATTGTCATCTATGAACTCCATTTCTTTTCGAGAATAGGCAGGAGAATCGTAAATTATGGAACCCCGGTTTGGTAGTTGTATGTACATAATAATGTGATAACCGCTAATAAATGCAATTCAAGGCTGAGCCCTGCGTGGCCTTCTGGATCAAAAAAAAAA ] [-] EMBL CF329077 [ AATACATCGGGAGGTAAAATGTCAGGTTGAATATTTTCTAGGCAGTTGGGCTTCAACCTTCACGCCCAGATGGATATATTGTCATCTATGAACTCCATTTCTTTTCGAGAATAGGCAGGAGAATCGTAAATTATGGAACCCCGGTTTGGTAGTTGTATGTACATAATAATGTGATAACCGCTAATAAATGCAATTCAAGGCTGAGCCCTGCGTGGCCTTCTGGATCAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11155#1 ------------------------------------------------------------ consensus_11155#2 ---------------------------------CGTCGCCTTCCTCACCGAACCCGCAAC 27 consensus_11155#0 CCCGCAAGTCTCCCTCTCGCACCACAACAAACGCGCCTCCTCCATCTCGAACTCTCCAGT 60 consensus_11155#1 ------------------------------------------------------------ consensus_11155#2 CGCCACCGCCACCGCCACCGCCCGTCCACATCCGCCGGCGCCGA--TGGCCTCCTCCGCC 85 consensus_11155#0 CTCCACCACCCCCGTCCCCGTCTCTCGATCGCCATGGCCTCCGCCCTCGCCGCCTCCACC 120 consensus_11155#1 ------------------------------------------------------------ consensus_11155#2 CTCGCCGTCTCCGTCGCCAAGCCAGCCGCGTCTCCTCCCGTCGCCGTCGCCGCGGTAACC 145 consensus_11155#0 GCCGTCTGCTCCTCTCCCCTCGCATCCGCCTCCGCCTCCG-CTTCGTCCGCGCGCCGCCT 179 consensus_11155#1 -------GTCGCCTCCTCCCGCAG-------TGCCGGGGCGTCCGCGCTG-CCCCGGT-- 43 consensus_11155#2 CCGCAGCGTCGCCTCCTCCCGCAG-------TGCCGGGGCGTCCGCGCTG-CCCCGGT-- 195 consensus_11155#0 GCGCGCGGTCCCGCCCTCCCGCGGCATCCGCTACCAGGCCCTCCGCGCGGACTCCGGTTT 239 *** * ******** * * ** ** * ******* * * ***** consensus_11155#1 CGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCA 103 consensus_11155#2 CGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCA 255 consensus_11155#0 CGCCGGGAACCGCCGGGGTGGCGGCCGTGGAGCGTCGGTAGTGTGCGCGGTCCAGGGCCA 299 ** * ** **** *** *** *** ** * ****** ******** * ********* consensus_11155#1 GGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGA 163 consensus_11155#2 GGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGA 315 consensus_11155#0 GGACACATCCATCCAAGTTCCAGAAGTGACGAAGTCAACATGGCAATCACTTGTTATGGA 359 *** ** *** ********** ** ***** ************** ******** **** consensus_11155#1 GAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGAT 223 consensus_11155#2 GAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGAT 375 consensus_11155#0 GAGCGAGCTTCCTGTCCTTGTTGGATACTGGGCTACATGGTGTGGGCCTTGCAAAATGAT 419 *** ** ***** ** ** **** * ******* * ***** ***** *********** consensus_11155#1 AGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCT 283 consensus_11155#2 AGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCT 435 consensus_11155#0 TGATCCCGTTGTTGGCAAGCTCTCCAAGGAGTATGAAGGGAAACTGAAATGCTACAAGCT 479 ***** ** ******* ** ** ** ** *********** ***** *********** consensus_11155#1 CAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAAT 343 consensus_11155#2 CAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAAT 495 consensus_11155#0 CAATACTGACGAGAATCCAGATATAGCAAGTCAGTATGGCGTCCGGAGCATCCCAACCAT 539 *** ***** ** ** ** ** ******* **** *** * * ***** ** ** ** consensus_11155#1 GATGATATTCAAGAACGGTGATAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCAC 403 consensus_11155#2 GATGATATTCAAGAACGGTGAGAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCAC 555 consensus_11155#0 GATGATATTCAAGAACGGAGAGAAGAAAGATGCAGTGATTGGAGCTGTGCCTGAGAGTAC 599 ****************** ** *********** ***************** ***** ** consensus_11155#1 CCTGGTCAGCAATATCAACAAATACATCGGGAGGTAAAATGTCAGGATGTATATTA---- 459 consensus_11155#2 CCTGGTCAGCAGCATCGACAAATACATCGGGAGGTAAAATGTCAGGTTGAATATTT---- 611 consensus_11155#0 ACTGATCGCATCCATTGAGAAATTTGTCGAGAGGTAAAATGCAAATGCCAAAACTGAACC 659 *** ** ** * **** *** *********** * * * * consensus_11155#1 -GCTAGGCAGTTGGGCTTGAACCTTGA-CGCCCAGATGGATGTATAGGCAAGTATGAACT 517 consensus_11155#2 -TCTAGGCAGTTGGGCTTCAACCTTCA-CGCCCAGATGGATATATTGTCATCTATGAACT 669 consensus_11155#0 CTTTGAACAGTTAGCATTACACGTCCAACTTTCAGA---ACTTCAGATCATTCAAGAGTC 716 * ***** * ** ** * * * **** * * ** * ** consensus_11155#1 GCATTGGTTTTAGGACAATGGGCAGGTAAATGTGTGGATGGTG--GAACCCCGGGAAGTG 575 consensus_11155#2 CCATTTCTTTTCGAG-AATAGGCAGGAGAAT-CGTAAATTATG--GAACCCCGGTT--TG 723 consensus_11155#0 GAAGCCATGCTCAATGTTTATATGCCTACGTGTATAGATAGTATTGGGAATCGCTTT-CG 775 * * * * * * ** * * ** * consensus_11155#1 GTGAGGGATGTGATCATAGAAATGGCGGTTGCCAGTTGGATTATACAG--ATGTAAGTTA 633 consensus_11155#2 GT-AGTTGTATGTACATAATAATG-TGATAACC-GCTAATAAATGCAA--TTCAAGGCTG 778 consensus_11155#0 GT-AGCATCCAATAAATGTAATTCGAGGATGCAGGTTGAATGATGAAATCATGAAAGTCG 834 ** ** ** * * * * * * ** * * * * consensus_11155#1 TACCCGAATTTGATCTTATG-GTGCAGTGCGGCGCGGCCTTTTTAGTTTTTGTTTCTCTT 692 consensus_11155#2 AGCCCTGCGTGGCCTTCTGG-ATCAAAAAAAAAAAAGGTTGCTTCGAGT----------- 826 consensus_11155#0 CAAGGAAGCCTGGTTTCATGTGTCCATTCTTTTGGCTGTAGATATGTATGGTATTGACTG 894 * * * * * * * * consensus_11155#1 CTACTCTCGATATTAA---TGTGGACCACAGTGTTTCCTAGTGCCACTNTTGTCCTAATA 749 consensus_11155#2 ------------------------------------------------------------ consensus_11155#0 TTAAGATACATATTACCCTTTTACACTATATTATTGCTTATGATATGTTCCTTCCAAATA 954 consensus_11155#1 G-TGATGAAGTTATATTTACATGTTGGATGTTTGAACATATTAAAGAAGATAAGATTGAA 808 consensus_11155#2 ------------------------------------------------------------ consensus_11155#0 GGTGCTTGAGGTAAAAAAA----------------------------------------- 973 consensus_11155#1 TTTTATTTATATGTCATATAGTATATATTATTAGAGATTGATGATACTAATAAGA 863 consensus_11155#2 ------------------------------------------------------- consensus_11155#0 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||