These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 974 fasta sequence [TTTTTTTTTTTTTTTTTTAGCTTTGGTCGATTAGTACTTAATCAAGGATGAGCCTCACGAGTCGTTAAACGATCAAATTTTTACACGAGAACGAAGGAGTTGCTTACCAAGTGAACATCCGATGCCGATATAATTAAATTCTCA-ACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGCATCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGTGAG-AACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTAT-GTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAAGCAGCAGTTTTTGACTTACT-GGCAAGTTGCATAAACTCCTGTATGATTTGGGGGTCTCCCCC-AATCTTCCACAAAATATTTGCT-GCACTTGCAAACAACTGCTCATTGTATGATCTTCCATCTTTTGAGATGGCTGCTGGGAATATACCTTCTTTATCACCCCTTGTGATATGGACATAGATGGTGGCAATCTGTTTCAAGAGCTGCTTCGGCTTGAACTCATACTTTTCAGGATCTTTTACAGTCAATGATTTCCCCCCTGGACCAGCAAGTTGCAAGAGGAAGTAATTTAGCATGCTTGCCACCCTTTCCACCATTTCAGGAAGGAGGAAAGGTGCTGAAATCTCCTCTCACCTCAAAACAACCATCCCAAC] [-] EMBL AU078411 [TTTTTTTTTTTTTTTTTTAGCTTTGGTCGATTAGTACTTAATCAAGGATGAGCCTCACGAGTCGTTAAACGATCAAATTTTTACACGAGAACGAAGGAGTTGCTTACCAAGTGAACATCCGATGCCGATATAATTAAATTCTCA ACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGCATCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGTGAG AACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTATGGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAAGCAGCAGTTTTTGACTTACTGGGCAAGTTGCATAAACTCCTGTATGATTTGGGGGTCTCCCCCNAATCTTCCACAAAATATTTGCTGGCACNTGg ] [+] EMBL CB644487 [ GACCTAATTTTTACACGAAAACGAAGGAGTTGCTTACCAAGGGAACATCCGATGCCGATATAATTAAATTCTCACACAGGCAGTAACACCATTTACAAAAAATTTGAATATGCAAATGCAGGGGAGCCACCATCAAAACGATAAATATCATAAAGATCCTCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCGGGCACCATCTATTCAATCAACCATATCAGAAGCCCCATCAGGTTCTCCCATTTCTGAAGCGGCAGCACTTCGTTTTTTGGACCGTTGAAACCTGATAAACTCTTCGATGCGCGACTTGAGCTCGGGATCCGGTATCAACATGTCTTGCGGAAGGGGAGAAACGGGTGAACGGATCACTACTGCCACTTACCAAGGGCCTAACAAAAACGGGACGATCTATTGCCACCCGAGATGATGGAAGTATTACAGGATCCTTCCTCAAAGTATACTGAATTGGATCAAGAAATTCATCTGGAAT GTCACCAAGCATAGCCTCAGCATCCGTTGCCTCAAAAGCAACGATTTTTGACTTACT GGCAAGTTGCAAAAACTCCTGTATGATTTGGGGGTCTCCCCC AATCTTCCACAAAATATTTGGT GCACTTGCAAACAACTGGTAATAGTAT ] [+] EMBL CB643847 [ ctttaaAGTT TTACCAAGTGAACATCCGATGCCGATATAACTTTATTCTCA ACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGCATCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGTGAG AACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTAT GTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAAGCAGCAGTTTTTGACTTACT GGCAAGTTGCATAAACTCCTGTATGATTTGGGGGTCTCCCCC AATCTTCCACAAAATATTTGCT GCACTTGCAAACAACTGCTCATTGTATGATCTTCCATCTTTTGAGATGGCTGCTGGGAATATACCTTCTTTATCACCCCTTGTGATATGGACATAGATGGTGGCAATCTGTTTCAAGAGCTGCTTCGGCTTGAACTCATACTTTTCAGGATCTTTTACAGTCAAT ] [-] EMBL CA764512 [ acCATCCAAT CCGATAT ATTAAATTTCCA CCAGNCAGTACCCCCA TTAC AAGAATTTGANTATGCAAATGCAGGGNAGCCAGCATCAAACCGATAANTATCATAANGATCATCTGT CCNCAAAAAAAATGTTCCTCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGTGAG AACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTAT GTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAAGCAGCAGTTTTTGACTTACT GGCAAGTTGCATAAACTCCTGTATGATTTGGGGGTCTCCCCC AATCTTCCACAAAATATTTGCT GCACTTGCAGACAACTGCTCATTGTATGATCTTCCATCTTTTGAGATGGCTGCTGGGAATATACCTTCTTTATCACCCCTTGTGATATGGACATAGATGGTGGCAATCTGTTTCAAGAGCTGCTTCGGCTTGAACTCATACTTTTCAGGATCTTTTACAGTCAATGATTTCCCCCCT ] [-] EMBL CB000450 [ CTGTTTCAAGAGCTGATTCGGCTTGAACTCATACTTTTCAGGATCTTTTACAGTCAATGATTTCCTCTGAGGACCAGCAAGTTGCAAGAGGAAGTAATTTAGCATGCTTGCCACCCTTTCCACCATTTCAGGAAGGAGGAAAGGTGCTGAAATCTCCTCTCACCTCAAAACAACCATCCCAAC] consensusID : consensus_11168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCTTTTTTTTTTTTTTTTTTTGCTTACCAAGTGAACATCCGATGCCGATATAATTAAATTCTCAACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGCATCAAAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCCTCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGGTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGGGAGAACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTATGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAAAAGCAGCAGTTTTTGACTTAAGCAAGTTGCATAACCTCCCTGTATGATTTGGGGGTCTCCCCCAATCTTCCACAAAATATTTGCTGCACTTGCAAACAACTGCTCATTGG] [+] EMBL CB619296 [CCTTTTTTTTTTTTTTTTTTTGCTTACCAAGTGAACATCCGATGCCGATATAATTAAATTCTCAACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGCATCAAAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCCTCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGGTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGGGAGAACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTATGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAAAAGCAGCAGTTTTTGACTTAAGCAAGTTGCATAACCTCCCTGTATGATTTGGGGGTCTCCCCCAATCTTCCACAAAATATTTGCTGCACTTGCAAACAACTGCTCATTGG] consensusID : consensus_11168#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 178 fasta sequence [TTTTTTTTTTTTTTTTGCAGGGGAGCCAGCGTCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGAC] [+] EMBL CF328715 [TTTTTTTTTTTTTTTTGCAGGGGAGCCAGCGTCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGA ] [-] EMBL CF328714 [ TTTTTTTTTTTTTNNGCAGGGGAGCCAGCGTCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11168#0 TTTTTTTTTTTTTTTTTTAGCTTTGGTCGATTAGTACTTAATCAAGGATGAGCCTCACGA 60 consensus_11168#1 ------------------------------------------------------------ consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 GTCGTTAAACGATCAAATTTTTACACGAGAACGAAGGAGTTGCTTACCAAGTGAACATCC 120 consensus_11168#1 -------------CCTTTTTTTTTTTTTTTTT-------TTGCTTACCAAGTGAACATCC 40 consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 GATGCCGATATAATTAAATTCTCAACAGGCAGTAACACCATTTACAAAGAATTTGAATAT 180 consensus_11168#1 GATGCCGATATAATTAAATTCTCAACAGGCAGTAACACCATTTACAAAGAATTTGAATAT 100 consensus_11168#2 --------------------------------------------------TTTTTTTTTT 10 *** * * consensus_11168#0 GCAAATGCAGGGGAGCCAGCATCAGAACGATAAATATCATAAAGATCATCTGTCCCACAA 240 consensus_11168#1 GCAAATGCAGGGGAGCCAGCATCAAAACGATAAATATCATAAAGATCATCTGTCCCACAA 160 consensus_11168#2 TTTTTTGCAGGGGAGCCAGCGTCAGAACGATAAATATCATAAAGATCATCTGTCCCACAA 70 *************** *** *********************************** consensus_11168#0 AAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCC 300 consensus_11168#1 AAAAAATGTTCCTCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCC 220 consensus_11168#2 AAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCC 130 *********** ************************************************ consensus_11168#0 CCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTG 360 consensus_11168#1 CCATCAGGGTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTG 280 consensus_11168#2 CCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGAC------------ 178 ******** *************************************** consensus_11168#0 ATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGG 420 consensus_11168#1 ATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGG 340 consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 TGAGAACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGA 480 consensus_11168#1 GGAGAACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGA 400 consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 TCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATT 540 consensus_11168#1 TCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATT 460 consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 GGATCAAGAAATTCATCTGGTATGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAA 600 consensus_11168#1 GGATCAAGAAATTCATCTGGTATGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAAAA 520 consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 GCAGCAGTTTTTGACTTACTGGCAAGTTGCATAAACTCC-TGTATGATTTGGGGGTCTCC 659 consensus_11168#1 GCAGCAGTTTTTGACTTA--AGCAAGTTGCATAACCTCCCTGTATGATTTGGGGGTCTCC 578 consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 CCCAATCTTCCACAAAATATTTGCTGCACTTGCAAACAACTGCTCATTGTATGATCTTCC 719 consensus_11168#1 CCCAATCTTCCACAAAATATTTGCTGCACTTGCAAACAACTGCTCATTGG---------- 628 consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 ATCTTTTGAGATGGCTGCTGGGAATATACCTTCTTTATCACCCCTTGTGATATGGACATA 779 consensus_11168#1 ------------------------------------------------------------ consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 GATGGTGGCAATCTGTTTCAAGAGCTGCTTCGGCTTGAACTCATACTTTTCAGGATCTTT 839 consensus_11168#1 ------------------------------------------------------------ consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 TACAGTCAATGATTTCCCCCCTGGACCAGCAAGTTGCAAGAGGAAGTAATTTAGCATGCT 899 consensus_11168#1 ------------------------------------------------------------ consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 TGCCACCCTTTCCACCATTTCAGGAAGGAGGAAAGGTGCTGAAATCTCCTCTCACCTCAA 959 consensus_11168#1 ------------------------------------------------------------ consensus_11168#2 ------------------------------------------------------------ consensus_11168#0 AACAACCATCCCAAC 974 consensus_11168#1 --------------- consensus_11168#2 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||