These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1242 fasta sequence [CAGCGAAGCCAACGCGTCACCTCCTCTCCCCGAACCCCCAACCCTCCAGAACCTTCCGCCTCCCGCCGGCGCCGGCGCCGCCGACTCGGCCGCGGAAACCCTAGCGTGCGCTCGCGCCCGCCCTCGCTCGCCGGCCACCTCCGGACTCCGCCTCCTCCGCCTGCTCCTCGTCTCCGGCCCCTCCGCCGCCGTCGACCGGTCAGATCTCGACGCCGTCAAGCCGCGATGGAGGACTGGGATTCTGAAGACTTTCAGCCCGCAGTGCCTAGTGCAAAAGCTGAGCCGCTTAAAAGTAAGTGGGCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGATGATCCTGCTCTAGAGAAACTTCGTCAACAAAGGCTTGTGGAAGAAGCTGACTTTAAGTCAACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCAAAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACAAACTGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCCATTGCAGCAATTGCTAATGAAAAGATCAAGGCT-GAGAAAGAAGCTGCAGCAGGCA-AAAAGAAACAAGGGGC-AAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTGATCGGCTGTGAGGGAAC-CGTCATCTTCTATGTATACCTTGGCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAAC-AATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAATCCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTATATTGGAGTCCTGCAAAAAAAAA] [+] EMBL AK106553 [CAGCGAAGCCAACGCGTCACCTCCTCTCCCCGAACCCCCAACCCTCCAGAACCTTCCGCCTCCCGCCGGCGCCGGCGCCGCCGACTCGGCCGCGGAAACCCTAGCGTGCGCTCGCGCCCGCCCTCGCTCGCCGGCCACCTCCGGACTCCGCCTCCTCCGCCTGCTCCTCGTCTCCGGCCCCTCCGCCGCCGTCGACCGGTCAGATCTCGACGCCGTCAAGCCGCGATGGAGGACTGGGATTCTGAAGACTTTCAGCCCGCAGTGCCTAGTGCAAAAGCTGAGCCGCTTAAAAGTAAGTGGGCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGATGATCCTGCTCTAGAGAAACTTCGTCAACAAAGGCTTGTGGAAGAAGCTGACTTTAAGTCAACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCAAAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACAAACTGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCCATTGCAGCAATTGCTAATGAAAAGATCAAGGCT GAGAAAGAAGCTGCAGCAGGCA AAAAGAAACAAGGGGC AAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTGATCGGCTGTGAGGGAAC CGTCATCTTCTATGTATACCTTGGCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAAC AATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAATCCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTATATTGGAGTCCTGCAAgtga ] [+] EMBL AU070160 [ CGCGTCACCTCCTCTCCCCGAACCCCCAACCCTCCAGAACCTTCCGCCTCCCGCCGGCGCCGGCGCCGCCGACTCGGCCGCGGAAACCCTAGCGTGCGCTCGCGCCCGCCCTCGCTCGCCGGCCACCTCCGGACTCCGCCTCCTCCGCCTGCTCCTCGTCTCCGGCCCCTCCGCCGCCGTCGACCGGTCAGATCTCGACGCCGTCAAGCCGCGATGGAGGACTGGGATTCTGAAGACTTTCAGCCCGCAGTGCCTAGTGCAAAAGCTGAGCCGCTTAAAAGTAAGTGGGCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAA ] [+] EMBL AK073059 [ TCCCCGAACCCCCAACCCTCCAGAACCTTCCGCCTCCCGCCGGCGCCGGCGCCGCCGACTCGGCCGCGGAAACCCTAGCGTGCGCTCGCGCCCGCCCTCGCTCGCCGGCCACCTCCGGACTCCGCCTCCTCCGCCTGCTCCTCGTCTCCGGCCCCTCCGCCGCCGTCGACCGGTCAGATCTCGACGCCGTCAAGCCGCGATGGAGGACTGGGATTCTGAAGACTTTCAGCCCGCAGTGCCTAGTGCAAAAGCTGAGCCGCTTAAAAGTAAGTGGGCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGATGATCCTGCTCTAGAGAAACTTCGTCAACAAAGGCTTGTGGAAGAAGCTGACTTTAAGTCAACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCAAAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACAAACTGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCCATTGCAGCAATTGCTAATGAAAAGATCAAGGCT GAGAAAGAAGCTGCAGCAGGCA AAAAGAAACAAGGGGC AAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTGATCGGCTGTGAGGGAAC CGTCATCTTCTATGTATACCTTGGCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAAC AATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAATCCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTATATT ] [+] EMBL BI802045 [ CCGCTTAAAAGTAAGTGGCCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGATGATCCTGCTCTAGAGAAACTTCGTCAAC AAGGCTTGTGGAAGAAGCTGACTTTAAGTCAACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCAAAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACCAACTGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCC TTGCAGC ATTGCTAATGAAAAGATCAAGGCT GAGAAAGAAGCTGCAGCAGGCA AAA ] [+] EMBL CF323426 [ gGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGATGATCCTGCTCTAGAGAAACTTCGTCAACAAAGGCTTGTGGAAGAAGCTGACTTTAAGTCAACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCAAAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACAAACTGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCCATTGCAGCAATTGCTAATGAAAAGATCAAGGCT GAGAAAGAAGCTGCAGCAGGCA AAAAGAAACAAGGGGCAAAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGG ] [+] EMBL BI809254 [ AAAGATCAAGCCTGGAGAAAGAA CTGCAGCAGGCACAAAAGAAACAAGGGGC AATAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTGATC GCTGTGAGGGAACACGTCATCTTCTAGGTATACCTTGGCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAACAAATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAATCCCCCTTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTAaaaaaaaa ] [+] EMBL AT003479 [ CAAGGGGC NAAAAAGAAGCAGCTACNCATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTNATCGGCTGTNAGGNAAC CGTCATNTTNTATGTATACCTTGGCAAGCANAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAAC AATGCCCATTTGTTCGACGTTGATTTTGACTCTCNCAGAATAGGGAAGAGCACCTGTGTGNTCGAGCTCGACACATAGGCGNTTTTTNTTATTNTTAATCCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTATATTGGAGTCCTGCAAAAAAAAA] [+] EMBL AT003643 [ CAAGGGGC AAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTGATCGGCTGTGAGGGAAC CGTCATCTTCTATGTATACCTTGGCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAAC AATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAATCCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTATATTGGAGTCCTGCAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||