|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 959 fasta sequence
[CCCTTTTATTTTTTTTTTTTTTTTCATTAAAAATTAGCCATTATTATTACATATC-GACGTTCAAGCGTCGGGTATATATACATGCAAAATTTTGCAGCAACCATGCAAATCCGTAGATCATTACAAAACCTTACGACAAATCTACCAAAGCATCCTTGTACAGATGGGAGGAGCCAAGCATCTAATGAAACCAAAAAAACAAAGATCTAGAAAAACCTTGTAAAATACAGCAACCATGATGCATCCTCTCGATGTCCATATGTCTAAGCAGAT-TGGCAGCATCTATCTTCGGAGTTTTCAGATAAGCTT-CTTGTGATCTAGAAAACCTTGTAAAATACAGTAACCATGATGCATTCTCTCGATGTGCTAATATATACATGTTCAGAGTTTTCAGAGAAGCTTCTTGTGATCCTAATTCTCGCAATGTACTTACTAATATATATGTATGTTCAGAGTTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGCCCTCGCTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTCGCCCTGCGCCGCCGCGACCTTCTCCCGCCGGCCGCCCCACGTCTTGAGGCAGGTGTTCTGCACCCCCCTGGCGTAAGAGAAGGAAACGCCCCACCGCCACGGGTTGGCCGACGGAGCCGCCTGGTTCATGGCGTTGAGGTTTCCGCGTCGCCTCCACCTCCGACTGGCCGCCGGAGAGGAACATGACGCCGGGCACCGCCGGCGGGACGCGGCGGCGACCTGCTCCGGCGTCGCCGCGCCGTCCTTGCTCTCGGCGCCCGGGGTCACCATGCTCGGCTTGAGGAGGATCCCCTCGAGCATCACGTTGTTCTCCGACATGTGGAAGAAGGTGTCCGCCCACACCTTCTGCGCCACCTCGAACGTCCTCTCGACCCTGTGCTCGCCGTCGAGCA]
[+] EMBL CB618577 [CCCTTTTATTTTTTTTTTTTTTTTCATTAAAAATTAGCCATTATTATTACATATC GACGTTCAAGCGTCGGGTATATATACATGCAAAATTTTGCAGCAACCATGCAAATCCGTAGATCATTACAAAACCTTACGACAAATCTACCAAAGCATCCTTGTACAGATGGGAGGAGCCAAGCATCTAATGAAACCAAAAAAACAAAGATCTAGAAAAACTTTGTAAAATACAGCAACCATGATGCATCCTCTCGATGTCCATATGTCTAAGCAGAT TGGCAGCATCTATCTTCGGAGTTTTCAAATAAGCTT CTTGTGATCTAAAAAACCTTGTAAAATACAGTAACCATGATGCATTCTCTCGATGGGCTAATATATACATGTTCAAAGTTTTCAAAAAAGCTTCTTGTGATCCTAATTCCCGCAATGTACTTACTAATATATATGTATGTTCAGAGTTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGCCCTCGCTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTCGCCCTGCGCCGCCGCGACCTTCTCCCGCCGGCCGCCCCACGTCTTGAGGCAGGTGTTCTGCACCCCCCTGGCGTAAGAGAAGGAAACGCCCCACCGC ]
[-] EMBL AU172704 [ TTTTTTTATCATTAAAAATTAGCCATTATTATTACATATCGGACGTTCAAGCGTCGNGTATATATACATGCAAAATTTTGCAGCAACCATGCAAATCCGTAGATCATTACAAAACCTTACGACAAATCTACCAAAGCATCCTTGTACAGATGGGAGGAGCCAAGCATCTAATGAAACCAAAAAAACAAAGATCTAGAAAAACCTTGTAAAATACAGCAACCATGATGCATCCTCTCGATGTCCATATGTCTAAGCAGAT TGGCAGCATCTATCTTCGGAGTTTTCAGATAAGCTT CTTGTGATCTAGAAAACCTTGTAAAATACAGTAACCATGATGCATTCTCTCGATGTGCTAATATATACATGTTCAGAGTTTTCAGAGAAGCTTCTTGNGATCCTAA ]
[-] EMBL BM420528 [ TTTTTTTT TTAAAAATTAGCCATTATTATTACATATC GACGTTCAAGCGTCGGGTATATATACATGCNAAA TTTGGAGCAACCATGCAAATCCGTAGATCATTACAAAACCTTACGACAAATCTACCAAAGCATCCTTGTACNGATGGGAGGAGCCAAGCATCTAATGAAACCAAAAAAACAAAGATCTAGAAAAACATTGT AAATACAGCAACCATGATGCATCCTCTCGATGTCCATATGTCTAAGCAGATGTGGGAGCATCTATCTTCGGAGTTTTCAGATAAGCTTCCTTGGGATCTAGA ]
[+] EMBL CB636218 [ AATTATCCATTATTATTACATATC GACGTTCAAGCGTCGTGTATATATACATGCAAAATTTTGCAGCAACCATGCAAATCCGTAGATCATTACAAAACCTTACGACAAATCTACCAAAGCATCCTTGTACAGATGGGAGGAGCCAAGCATCTAATGAAACCAAAAAAACAAAGATCTAGAAAAACCTTGTAAAATACAGCAACCATGATGCATCCTCTCGATGTCCATATGTCTAAGCAGAT TGGCAGCATCTATCTTCGGAGTTTTCAGATAAGCTT CTTGTGATCTAAAAAACCTTGTAAAATACAGTAACCATGATGCATTCTCTCGATGTGCTAATATATACATGTTCAGAGTTTTCAGAGAAGCTTCTTGTGATCCTAATTCTCGCAATGTACTTACTAATATATATGTATGTTCAGAGTTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGCCCTCGCTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTCGCCC ]
[-] EMBL BI809767 [ tttTTTTGCAGCAACCATGCAAATCCGTAGATCATTACAAAACCTTACGACAAATCTACCAAAGCATCC TGTACAGATGGGAGGAGCCAAGCATCTAATGAAACCAAAAAAACAAAGATCTAGAAAAA CATGTAAAATACAGCAACCATGATGCATCCTCTCGATGTCCATATGTCTAAGCAGAT GGGCAGCATCTATCTTCGGAGTTTTCAGATAAGCTT CTTGTGATCTAGAAAACCTTGTAAAATACAGTAACCATGATGCATTCTCTCGATGTGCTAATATATACATGTTCAGAG TTTCAGAGAAGCTTCTGGT ]
[-] EMBL CA754110 [ CTAATATATACATGTTCAGAGTTTTCAGAGAAGCTTCTTGTGATCCTAATTCTCGCAATGTACTTACTAACATATATGTATGTTCAGAGTTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGCCCTCGCTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTCGCCCTG CGCCGCGACGTTCTCCCGCCGGCTGCCCCACGTCTTGAGGCAGGTGTTCTGCAGCGCCCTGGCGTAGGAGAAGGAGACGCGCCACCGCCACGGGTTGGCCGACGGAGCCGCCTGGTTCATGGCGTTGAGGTTTCCGCGTCGCCTCCACCTCCGACTGGCCGCCGGAGAGGAACATGACGCCGGGCACCGCCGGCGGGACGCGGCGGCGACCTGCTCCGGCGTCGCCGCGCCGTCCTTGCTCTCGGCGCCCGGGGTCACCATGCTCGGCTTGAGGAGGATCCCCTCGAGCATCACGTTGTTCTCCGACATGTGGAAGAAGGTGTCCGCCCACACCTTCTGCGCCACCTCGAACGTCCTCTCGACCCTGTGCTCGCCGTCGAGCA]
consensusID : consensus_11286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[TTTTTTATCATTAAAAATTAGNCATTATTATTACATATCGACGTTCAAGCGTCGGTATATATACCATGGCAAATTTGGNGCAACCATGAAATCCGTAGATCATTACAAAACCTTACGACAAATCTACCAAAGCATCCTTGTACAGATGGGAGGCAGCCAAGCATCTAATGAAACCAAAAAAACAAAGATCTAGAAAAACATTGTAAAATACAGCAACCATGATGCATCCTCTCGATGTCCCATATGTCTAAGCAGATTGGAGCATCTATCTTCGGAGTTTTCAGATAAGCTTCTGTGTGATCTCAGAAAACCTGTGTAACACATCACAGTAACCCATGATGCCATTCTCTCGATGTGCTAATATATACCATGTTCCAGCAGTTTTCCAGCAGCAAGCTTCTTGTGGATCCTAATTCTCGCCAAGGTGACTTTACTAATTATATCATTGTCATTGTTCCAGNAGTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGGCCTCGCGTGGCTCGGGGCTCGCCGTCGCTGGTGTACTTGGCGAGCTGGCCAGG]
[-] EMBL BM418887 [TTTTTTATCATTAAAAATTAGNCATTATTATTACATATCGACGTTCAAGCGTCGGTATATATACCATGGCAAATTTGGNGCAACCATGAAATCCGTAGATCATTACAAAACCTTACGACAAATCTACCAAAGCATCCTTGTACAGATGGGAGGCAGCCAAGCATCTAATGAAACCAAAAAAACAAAGATCTAGAAAAACATTGTAAAATACAGCAACCATGATGCATCCTCTCGATGTCCCATATGTCTAAGCAGATTGGAGCATCTATCTTCGGAGTTTTCAGATAAGCTTCTGTGTGATCTCAGAAAACCTGTGTAACACATCACAGTAACCCATGATGCCATTCTCTCGATGTGCTAATATATACCATGTTCCAGCAGTTTTCCAGCAGCAAGCTTCTTGTGGATCCTAATTCTCGCCAAGGTGACTTTACTAATTATATCATTGTCATTGTTCCAGNAGTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGGCCTCGCGTGGCTCGGGGCTCGCCGTCGCTGGTGTACTTGGCGAGCTGGCCAGG]
consensusID : consensus_11286#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence
[TTTTTTACTCCATAGTCGATATATCATGAAGAATTAGCCTTATTATTACATATCGACGTTCAAGCGTCGTGTATATATACATGCAAAATTTTGGAGCAACATGCAAATCCGTAGATCCATTACAAAACCTTACTGACAAATCTACCAAAGCATCCTTGTACAGATGGGAGGAGCCAAGCATCTAATGAAACCCAAAAAAACAAAGATCTAGAAAAACATTTGTAAAATACAGCAACCATGATGCATCCTCTCGATGTCCATATGTCTAAGCAGATTGGCAGCATCTATCTTCGGAGTTTTCAGATAAGCTTCTTGTGATCTAGAAAACCTTGTAAAATACAGTAACCATGATGCATTCTCTCGATGTGCTAATATATACATGTTCAGAGTTTTCAGAGAAGCTTCTTGTGATCCTAATTCTCGCAAGTGTACTTACTAATATATATGTATGTTCAGAGTTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGGCCTCGTGGCTCGGGGCTCGCGTC]
[-] EMBL BI810367 [TTTTTTACTCCATAGTCGATATATCATGAAGAATTAGCCTTATTATTACATATCGACGTTCAAGCGTCGTGTATATATACATGCAAAATTTTGGAGCAACATGCAAATCCGTAGATCCATTACAAAACCTTACTGACAAATCTACCAAAGCATCCTTGTACAGATGGGAGGAGCCAAGCATCTAATGAAACCCAAAAAAACAAAGATCTAGAAAAACATTTGTAAAATACAGCAACCATGATGCATCCTCTCGATGTCCATATGTCTAAGCAGATTGGCAGCATCTATCTTCGGAGTTTTCAGATAAGCTTCTTGTGATCTAGAAAACCTTGTAAAATACAGTAACCATGATGCATTCTCTCGATGTGCTAATATATACATGTTCAGAGTTTTCAGAGAAGCTTCTTGTGATCCTAATTCTCGCAAGTGTACTTACTAATATATATGTATGTTCAGAGTTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGGCCTCGTGGCTCGGGGCTCGCGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11286#0 CCCTTTTATTTTTTTTTTTTTTT-TCATTAAAAATTAGCCATTATTATTACATATCGACG 59
consensus_11286#2 -TTTTTTACTCCATAGTCGATATATCATGAAGAATTAGCC-TTATTATTACATATCGACG 58
consensus_11286#1 -----------------TTTTTTATCATTAAAAATTAGNCATTATTATTACATATCGACG 43
* * **** ** ****** * *******************
consensus_11286#0 TTCAAGCGTCGGGTATATATACATGCAAAATTTTGCAGCAACCATGCAAATCCGTAGATC 119
consensus_11286#2 TTCAAGCGTCGTGTATATATACATGCAAAATTTTGGAGCAAC-ATGCAAATCCGTAGATC 117
consensus_11286#1 TTCAAGCGTCG-GTATATATACCATGGCAAATTTGGNGCAACCATG-AAATCCGTAGATC 101
*********** ********** ** **** ***** *** *************
consensus_11286#0 -ATTACAAAACCTTAC-GACAAATCTACCAAAGCATCCTTGTACAGATGGGAGG-AGCCA 176
consensus_11286#2 CATTACAAAACCTTACTGACAAATCTACCAAAGCATCCTTGTACAGATGGGAGG-AGCCA 176
consensus_11286#1 -ATTACAAAACCTTAC-GACAAATCTACCAAAGCATCCTTGTACAGATGGGAGGCAGCCA 159
*************** ************************************* *****
consensus_11286#0 AGCATCTAATGAAACC-AAAAAAACAAAGATCTAGAAAAAC-CTTGTAAAATACAGCAAC 234
consensus_11286#2 AGCATCTAATGAAACCCAAAAAAACAAAGATCTAGAAAAACATTTGTAAAATACAGCAAC 236
consensus_11286#1 AGCATCTAATGAAACC-AAAAAAACAAAGATCTAGAAAAAC-ATTGTAAAATACAGCAAC 217
**************** ************************ *****************
consensus_11286#0 CATGATGCATCCTCTCGATGTCC-ATATGTCTAAGCAGATTGGCAGCATCTATCTTCGGA 293
consensus_11286#2 CATGATGCATCCTCTCGATGTCC-ATATGTCTAAGCAGATTGGCAGCATCTATCTTCGGA 295
consensus_11286#1 CATGATGCATCCTCTCGATGTCCCATATGTCTAAGCAGATTGG-AGCATCTATCTTCGGA 276
*********************** ******************* ****************
consensus_11286#0 GTTTTCAGATAAGCTTCT-TGTGATCT-AGAAAACCT-TGTAAAATA---CAGTAACC-A 346
consensus_11286#2 GTTTTCAGATAAGCTTCT-TGTGATCT-AGAAAACCT-TGTAAAATA---CAGTAACC-A 348
consensus_11286#1 GTTTTCAGATAAGCTTCTGTGTGATCTCAGAAAACCTGTGTAACACATCACAGTAACCCA 336
****************** ******** ********* ***** * * ******** *
consensus_11286#0 TGATGC-ATTCTCTCGATGTGCTAATATATAC-ATGTTCAG--AGTTTTCAGAGA---AG 399
consensus_11286#2 TGATGC-ATTCTCTCGATGTGCTAATATATAC-ATGTTCAG--AGTTTTCAGAGA---AG 401
consensus_11286#1 TGATGCCATTCTCTCGATGTGCTAATATATACCATGTTCCAGCAGTTTTCCAGCAGCAAG 396
****** ************************* ****** ******* * **
consensus_11286#0 CTTCTTGTG-ATCCTAATTCTCGC--AA-TGTACTTACTAAT-ATATATGTATG-----T 449
consensus_11286#2 CTTCTTGTG-ATCCTAATTCTCGC--AAGTGTACTTACTAAT-ATATATGTATG-----T 452
consensus_11286#1 CTTCTTGTGGATCCTAATTCTCGCCAAGGTGACTTTACTAATTATATCATTGTCATTGTT 456
********* ************** * ** ******** **** * * *
consensus_11286#0 TCAGAGTTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGCCCTC 509
consensus_11286#2 TCAGAGTTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGGCCTC 512
consensus_11286#1 CCAGNAGTTTTCAGTCGAAAATTATTTTCAGTAGGTGTAGTTCTTGACGAACATGGCCTC 516
*** ************************************************ ****
consensus_11286#0 GCTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTCGC 569
consensus_11286#2 GTGG--CTCGGGGCTCGCGTC--------------------------------------- 531
consensus_11286#1 GCGTGGCTCGGGG--CTCGCCGTCGCTGGTGTACTTGGCGAGCTGGCCAGG--------- 565
* ***** * * ** *
consensus_11286#0 CCTGCGCCGCCGCGACCTTCTCCCGCCGGCCGCCCCACGTCTTGAGGCAGGTGTTCTGCA 629
consensus_11286#2 ------------------------------------------------------------
consensus_11286#1 ------------------------------------------------------------
consensus_11286#0 CCCCCCTGGCGTAAGAGAAGGAAACGCCCCACCGCCACGGGTTGGCCGACGGAGCCGCCT 689
consensus_11286#2 ------------------------------------------------------------
consensus_11286#1 ------------------------------------------------------------
consensus_11286#0 GGTTCATGGCGTTGAGGTTTCCGCGTCGCCTCCACCTCCGACTGGCCGCCGGAGAGGAAC 749
consensus_11286#2 ------------------------------------------------------------
consensus_11286#1 ------------------------------------------------------------
consensus_11286#0 ATGACGCCGGGCACCGCCGGCGGGACGCGGCGGCGACCTGCTCCGGCGTCGCCGCGCCGT 809
consensus_11286#2 ------------------------------------------------------------
consensus_11286#1 ------------------------------------------------------------
consensus_11286#0 CCTTGCTCTCGGCGCCCGGGGTCACCATGCTCGGCTTGAGGAGGATCCCCTCGAGCATCA 869
consensus_11286#2 ------------------------------------------------------------
consensus_11286#1 ------------------------------------------------------------
consensus_11286#0 CGTTGTTCTCCGACATGTGGAAGAAGGTGTCCGCCCACACCTTCTGCGCCACCTCGAACG 929
consensus_11286#2 ------------------------------------------------------------
consensus_11286#1 ------------------------------------------------------------
consensus_11286#0 TCCTCTCGACCCTGTGCTCGCCGTCGAGCA 959
consensus_11286#2 ------------------------------
consensus_11286#1 ------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||