These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1964 fasta sequence [CTCCCCTCCCGTCTTCTTTGCTCAAATAGCCATCGCGAGTCTCGCGAACTTCCCCAGCTGCCTCAAAGCCGGAGGAGCTCGCCGCCCACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGGCGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGGCGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGTAAGCCCGATCGATCGCTGCTCCTGCCTGTTTCAGTGTTTCTGCTCCGGTTAAAATTCAGAAAGTTCACGGGAAATGCATTGCGAATTTTAACTGTACAGATGTTTCGTTTAGTCCTATCTAGAAACTTTTTTTTTTTAACGGTTCGACCGCGACGACGTTTTTGTCTCAAATGAAAACGAAACGACGTTTTTAGTGGAGAGACTACAGCAAAATTTCCAATGTTCAGAACTAGGACCAGGAGGATACTCTAGTCTATAGCTATAGCTGCCATAAACGCAGATGATTTTGAGAAACGTGGCCCATGCACCACCACCACCACCGCGCCATAGCTAAACAACAAGACAACGTAACTCAGCTAGCTGCAGTTTCACTTTCACAGTAGGAGGAGGAAGGAAGCAAGGAACGCGAGAAAGAGGCCACAGCACATGCAGCTTCTTAAATACACAGTACCAACTAAAGTGTCGCAACAGTGCTCGTAGTATTATTGCAACGCAGCTAGTAGCCGAGAGCAGCGGTGTGTACCTCGACGTGTGTGACATGACATCCTAGGAAGAGATCTCTAGCCGCGCGCTGCCCGGCCTGAACAATGGCAGGATCGTCGGCAGTGCAGCGGCGCCGCTGCAACGCTACTAGCTACTCCTCCTCGCTGACACGAAGCATCAGCTTCGTTTACTACTTGTCATTAATAAAAATCTCGATAGCAGCAAGGTTTGGTTGAGTTGAGCTCATCCGGTGTCTTCTGACTTCCATGGTCAGCTTGCTCGCGTAATCTCGTCCGTTTTCTAATGCCTCTAGAGTCCAATGGAAATATGGAATCTTGCCCTTTATTTACGTCAGTAGTTGCTGTAGCTCTATCTGGCCCCTTCGTCAGGACAAAAGGCCACTGTCTCTAACATATTAAAATTCAAACGGCTTCGAAATGTTTACAAGTAGGTATACTTGCATTGGTTTCAATTTTAAAAAGGATCAAAAATATAGTTGGCGTATGAATGCTTCACCACTCATTTTTTTTCTGTTACTATAAGGAGTGGCATTCCTGTCCGTGCACGGGTCATGCAGTTCCAAATACTATTAATTAGCTCATTAACGTGTATTAGAACGCAAGAAGCCGAGATCGGCGCGCGGCTTTTGCTGTTCTTGTTATAACGGTTGCAGTAAAATTATTGGAGCTTTTGATGATAAACACGGCTTCTTTCCACATAGAAAGCTACTGAATTTCCCACTAAAACGAAGCGTTCATCAAACAATCACCTGTGTGGACCAAAGCAATAATAGCATCGTCTCTTAACTAATGCCATTAAAATTTAGGCCCAATTCGCTTTTGCTTAACCACCGAATGTACATTAAACATCAAATGAAGCGTGCAACTTGGTCGCCGCAACAAATACAATCATCGCCATGCCGTCCAAGCTATGGGTATCTATAGATACAATTATTTGGGGGACAAGGGCTCGGCATGTTTTTGCGCTGCTGTGTATTTAATTCTAGTCCGATGTGCAACAGAGTGGGATTGATGGCGACCCAAGATCAGTTTGTTTACAGCCAATCTTGTTTAACCTTAGGTGTACTTTGGTCACGCATAGCTTGTGCCCTGTTCTAAAGGACACGTGTAATGGTATCGATCACTACCCTGGTTTGAATTATGCCTTCTTTGTAAGCAGTGATCCTTTTGGAAAATTTGTAGGAACTAGTTCGATATTGGTAAATAATACTCGTAAGTACAACAATT] [+] EMBL AK072040 [CTCCCCTCCCGTCTTCTTTGCTCAAATAGCCATCGCGAGTCTCGCGAACTTCCCCAGCTGCCTCAAAGCCGGAGGAGCTCGCCGCCCACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGGCGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGGCGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGTAAGCCCGATCGATCGCTGCTCCTGCCTGTTTCAGTGTTTCTGCTCCGGTTAAAATTCAGAAAGTTCACGGGAAATGCATTGCGAATTTTAACTGTACAGATGTTTCGTTTAGTCCTATCTAGAAACTTTTTTTTTTTAACGGTTCGACCGCGACGACGTTTTTGTCTCAAATGAAAACGAAACGACGTTTTTAGTGGAGAGACTACAGCAAAATTTCCAATGTTCAGAACTAGGACCAGGAGGATACTCTAGTCTATAGCTATAGCTGCCATAAACGCAGATGATTTTGAGAAACGTGGCCCATGCACCACCACCACCACCGCGCCATAGCTAAACAACAAGACAACGTAACTCAGCTAGCTGCAGTTTCACTTTCACAGTAGGAGGAGGAAGGAAGCAAGGAACGCGAGAAAGAGGCCACAGCACATGCAGCTTCTTAAATACACAGTACCAACTAAAGTGTCGCAACAGTGCTCGTAGTATTATTGCAACGCAGCTAGTAGCCGAGAGCAGCGGTGTGTACCTCGACGTGTGTGACATGACATCCTAGGAAGAGATCTCTAGCCGCGCGCTGCCCGGCCTGAACAATGGCAGGATCGTCGGCAGTGCAGCGGCGCCGCTGCAACGCTACTAGCTACTCCTCCTCGCTGACACGAAGCATCAGCTTCGTTTACTACTTGTCATTAATAAAAATCTCGATAGCAGCAAGGTTTGGTTGAGTTGAGCTCATCCGGTGTCTTCTGACTTCCATGGTCAGCTTGCTCGCGTAATCTCGTCCGTTTTCTAATGCCTCTAGAGTCCAATGGAAATATGGAATCTTGCCCTTTATTTACGTCAGTAGTTGCTGTAGCTCTATCTGGCCCCTTCGTCAGGACAAAAGGCCACTGTCTCTAACATATTAAAATTCAAACGGCTTCGAAATGTTTACAAGTAGGTATACTTGCATTGGTTTCAATTTTAAAAAGGATCAAAAATATAGTTGGCGTATGAATGCTTCACCACTCATTTTTTTTCTGTTACTATAAGGAGTGGCATTCCTGTCCGTGCACGGGTCATGCAGTTCCAAATACTATTAATTAGCTCATTAACGTGTATTAGAACGCAAGAAGCCGAGATCGGCGCGCGGCTTTTGCTGTTCTTGTTATAACGGTTGCAGTAAAATTATTGGAGCTTTTGATGATAAACACGGCTTCTTTCCACATAGAAAGCTACTGAATTTCCCACTAAAACGAAGCGTTCATCAAACAATCACCTGTGTGGACCAAAGCAATAATAGCATCGTCTCTTAACTAATGCCATTAAAATTTAGGCCCAATTCGCTTTTGCTTAACCACCGAATGTACATTAAACATCAAATGAAGCGTGCAACTTGGTCGCCGCAACAAATACAATCATCGCCATGCCGTCCAAGCTATGGGTATCTATAGATACAATTATTTGGGGGACAAGGGCTCGGCATGTTTTTGCGCTGCTGTGTATTTAATTCTAGTCCGATGTGCAACAGAGTGGGATTGATGGCGACCCAAGATCAGTTTGTTTACAGCCAATCTTGTTTAACCTTAGGTGTACTTTGGTCACGCATAGCTTGTGCCCTGTTCTAAAGGACACGTGTAATGGTATCGATCACTACCCTGGTTTGAATTATGCCTTCTTTGTAAGCAGTGATCCTTTTGGAAAATTTGTAGGAACTAGTTCGATATTGGTAAATAATACTCGTAAGTACAACAATT] consensusID : consensus_1130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [ACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGGCGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGGCGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGCTGCAGCAGCAGCGGCGGCGGCATGAGGCGCTGACCGGGCGGCGCCGTGGTGGTGGCGGAGGGATGTCGCGGCGGCACGGCCGGTTCCGGTTCGCCACCGGCGGCGGCGACGGCGACGGCGACGAGGAATGCGCTGGCGTGGCGGAGGTGCACCAGGCGGACTGCACGGTCGCAGACGTGCCGGGCCGCGAGCCGTCGGTGTCCACTGGTGCAACTGCTTCAACGATCTGTTTGATGCCCCCTGTGCGTCGCCTGACTCTGCTCCCCCATGCCTCTCCACCCGGCTTCCTGTCGCCCGCCGGCTCAGCTCACCACCACCCTGACGCGCGCCGACTCTCCGCTCGCCCCGCGCCCCACCCCGCAGCGCCAGGCCTGGACCCGCGGCGACGCCCGCGGGACGTGCGCCCGTGCCCCGGACGGAGCGCCCCAGCATCGCCGGCACGAGCCACCCGCATTGCCGACCCCATCCCGCCGCCGCCGGCGTC] [+] EMBL CA754578 [ACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGGCGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGGCGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGCTGCAGCAGCAGCGGCGGCGGCATGAGGCGCTGACCGGGCGGCGCCGTGGTGGTGGCGGAGGGATGTCGCGGCGGCACGGCCGGTTCCGGTTCGCCACCGGCGGCGGCGACGGCGACGGCGACGAGGAATGCGCTGGCGTGGCGGAGGTGCACCAGGCGGACTGCACGGTCGCAGACGTGCCGGGCCGCGAGCCGTCGGTGTCCACTGGTGCAACTGCTTCAACGATCTGTTTGATGCCCCCTGTGCGTCGCCTGACTCTGCTCCCCCATGCCTCTCCACCCGGCTTCCTGTCGCCCGCCGGCTCAGCTCACCACCACCCTGACGCGCGCCGACTCTCCGCTCGCCCCGCGCCCCACCCCGCAGCGCCAGGCCTGGACCCGCGGCGACGCCCGCGGGACGTGCGCCCGTGCCCCGGACGGAGCGCCCCAGCATCGCCGGCACGAGCCACCCGCATTGCCGACCCCATCCCGCCGCCGCCGGCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1130#0 CTCCCCTCCCGTCTTCTTTGCTCAAATAGCCATCGCGAGTCTCGCGAACTTCCCCAGCTG 60 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 CCTCAAAGCCGGAGGAGCTCGCCGCCCACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGG 120 consensus_1130#1 ---------------------------ACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGG 33 ********************************* consensus_1130#0 CGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGG 180 consensus_1130#1 CGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGG 93 ************************************************************ consensus_1130#0 CGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGTA--AGC 238 consensus_1130#1 CGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGCTGCAGC 153 ***************************************************** *** consensus_1130#0 CCGATCGATCGCTGCTCCTGCCTGTTTCAGTGTTTCTGCTCCGGTTAAAATTCAGAAAGT 298 consensus_1130#1 AGCAGCGGCGGCGGCATGAGGCGCTGACCGGGCGGC-GCCGTGGTGGTGGCGGAGGGATG 212 * ** ** ** * * * * * * * ** *** ** * consensus_1130#0 TCACGG-GAAATGC---ATTGCGAATTTTAACTGTACAGATGTTTCGTTTAGTCCTATCT 354 consensus_1130#1 TCGCGGCGGCACGGCCGGTTCCGGTTCGCCACCG-GCGGCGGCGACGGCGACGGCGACGA 271 ** *** * * * ** ** * ** * * * * ** * * * consensus_1130#0 AGAAACTTTTTTTTTTTAACGGTTCGACCGCGACGACGTTTTTGTCTCAAATGAAAACGA 414 consensus_1130#1 GGAATGCGCTGGCGTGGCGGAGGTGCACCAGGCGGACTGCACGGTCGCAGACGTGCCGGG 331 *** * * * * *** * *** *** ** * * * consensus_1130#0 AACGACGTTTTTAGTGGAGAGACTACAGCAAAATTTCCAATGTTCAGAACTAGGACCAGG 474 consensus_1130#1 CCGCGAGCCGTCGGTGTCCA--CTGGTGCAACTGCTTCAACGATCTGTTTGATGCCCCCT 389 * * *** * ** **** * *** * ** * * * ** consensus_1130#0 AGGATACTCTAGTCTATAGCTATAGCTGCCA-TAAACGCAGATGATTTTGAGAAACGTGG 533 consensus_1130#1 GTGCGTCGCCTGACTCTGCTCCCCCATGCCTCTCCACCCGGCTTCCTGTCGCCCGCCGGC 449 * * * * ** * **** * ** * * * * * * * consensus_1130#0 CCCATGCACCACCACCACCACCGCGCCATAGCTAAACAACAAGACAACGTAACTCAGC-T 592 consensus_1130#1 TCAGCTCACCACCACC-CTGACGCGCGCCGACTCTCCGCTCGCCCCGCGCCCCACCCCGC 508 * ********** * ***** ** * * ** * * * consensus_1130#0 AGCTGCAGTTTCACTTTCACAGTAGGA---GGAGGAAGGAAGCAAGGAACGCGAGAAAGA 649 consensus_1130#1 AGCGCCAGGCCTGGACCCGCGGCGACGCCCGCGGGACGTGCGCCCGTGCCCCGGACGGAG 568 *** *** * * * * *** * ** * * ** consensus_1130#0 GGCCACAGCACATGCAGCTTCTTAAATACACAGTACCAACTAAAGTGTCGCAACAGTGCT 709 consensus_1130#1 CGCCCCAGCATCGCCGGCACGAGCCACCCGCATTGCCGACCCCA-TCCCGCCGCCGCCGG 627 *** ***** * ** * * ** * ** ** * * *** * * consensus_1130#0 CGTAGTATTATTGCAACGCAGCTAGTAGCCGAGAGCAGCGGTGTGTACCTCGACGTGTGT 769 consensus_1130#1 CGTC-------------------------------------------------------- 631 *** consensus_1130#0 GACATGACATCCTAGGAAGAGATCTCTAGCCGCGCGCTGCCCGGCCTGAACAATGGCAGG 829 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 ATCGTCGGCAGTGCAGCGGCGCCGCTGCAACGCTACTAGCTACTCCTCCTCGCTGACACG 889 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 AAGCATCAGCTTCGTTTACTACTTGTCATTAATAAAAATCTCGATAGCAGCAAGGTTTGG 949 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 TTGAGTTGAGCTCATCCGGTGTCTTCTGACTTCCATGGTCAGCTTGCTCGCGTAATCTCG 1009 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 TCCGTTTTCTAATGCCTCTAGAGTCCAATGGAAATATGGAATCTTGCCCTTTATTTACGT 1069 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 CAGTAGTTGCTGTAGCTCTATCTGGCCCCTTCGTCAGGACAAAAGGCCACTGTCTCTAAC 1129 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 ATATTAAAATTCAAACGGCTTCGAAATGTTTACAAGTAGGTATACTTGCATTGGTTTCAA 1189 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 TTTTAAAAAGGATCAAAAATATAGTTGGCGTATGAATGCTTCACCACTCATTTTTTTTCT 1249 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 GTTACTATAAGGAGTGGCATTCCTGTCCGTGCACGGGTCATGCAGTTCCAAATACTATTA 1309 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 ATTAGCTCATTAACGTGTATTAGAACGCAAGAAGCCGAGATCGGCGCGCGGCTTTTGCTG 1369 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 TTCTTGTTATAACGGTTGCAGTAAAATTATTGGAGCTTTTGATGATAAACACGGCTTCTT 1429 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 TCCACATAGAAAGCTACTGAATTTCCCACTAAAACGAAGCGTTCATCAAACAATCACCTG 1489 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 TGTGGACCAAAGCAATAATAGCATCGTCTCTTAACTAATGCCATTAAAATTTAGGCCCAA 1549 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 TTCGCTTTTGCTTAACCACCGAATGTACATTAAACATCAAATGAAGCGTGCAACTTGGTC 1609 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 GCCGCAACAAATACAATCATCGCCATGCCGTCCAAGCTATGGGTATCTATAGATACAATT 1669 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 ATTTGGGGGACAAGGGCTCGGCATGTTTTTGCGCTGCTGTGTATTTAATTCTAGTCCGAT 1729 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 GTGCAACAGAGTGGGATTGATGGCGACCCAAGATCAGTTTGTTTACAGCCAATCTTGTTT 1789 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 AACCTTAGGTGTACTTTGGTCACGCATAGCTTGTGCCCTGTTCTAAAGGACACGTGTAAT 1849 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 GGTATCGATCACTACCCTGGTTTGAATTATGCCTTCTTTGTAAGCAGTGATCCTTTTGGA 1909 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 AAATTTGTAGGAACTAGTTCGATATTGGTAAATAATACTCGTAAGTACAACAATT 1964 consensus_1130#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||