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Oryza sativa
cluster # 11309 cluster # 11309       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11309#0 length = 1250 sequences # 4  
consensus_11309#1 length = 1091 sequences # 2  
consensus_11309#2 length = 699 sequences # 1  
consensus_11309#3 length = 293 sequences # 1  

consensusID : consensus_11309#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1250
fasta sequence
                              [ACGGCGGCGGCGGCGGCGGCGGCGGAGGGGGCGGAGGGCATGGGCATCAGCTGCAGGACGGGAGCGTGGACTTGCTGGCGCGGCACAGCAGCTCGCCGGCCGGATTCTTCTCCAACCTCATGGCCAGCAACGGCTTTCCAGGCTCAAAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACCACCACCCTTCCATGGCCGGCAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGTCCCAGCTGAGCTTCACGGCCGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCTTCCCCGACCGCGCCGGCGCCGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCAGCGGCGGCGGCGGGTTCTCCATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCACCCTCGGCGGGTACGAGTCCCAGTTCGGCGGCATGGCGAGCACGTCGGCGCTGGAGATGGCCGGCATGGACAGGTACCTGCAGCTGCAGCATGACCAGGTGCCGTTCAAAGTGCGGGCCAAGCGCGGCTGCGCGACGCACCCCAGGAGCATCGCGGAGAGGGTACGTACGCAATATCATGATCAAAACGCCTCTATATTTGCTTTTGCTTTCTCTTCAGATCTTGACACATGAGCATGTACGTCGGTGTGATCGATGCGCGTCCGTAGGAACGGAGGACGAGAATTAGCGAGAAGCTCAGGAAGCTGCAGGAGCTGGTGCCCAACATGGACAAGCAAACAAGCACAGCGGACATGTTGGACCTTGCAGTTGAGCACATCAAGGGTCTGCAGAGCCAGCTGCAGGCTCTGAAGCATGAGCAGGAGAAGTGCACTTGCTGCAGCAGGCCTTGATTGATGAAGCAGTGAGACGGCGAAACTGAAAGGTATCTATCCTTAGTTTGGAACCCTGATTACGGATGATACTTTCATATTTCCTTGAGAGTAACGCATGCGTGGATGCATGAACCAATTAATGTCAGTGACACAATCCAAATCGACCGTGAGCATTTTGTCGAAATGTGTAAATTGTTAGATAGGACATGGCAAGGGACATGTATATGCATGCCTGCATGCATGAGTGAGTGCAT-GGA-GCTAGCTACTCCGAAATAGCGGGGTGCAGCCATT-GTGATCCCTTAATTAATTCTCGATCCACTGATGATTAATTAGCTTGTAATTCTGTCTTTAAACCTTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATGNAATTT]

[+] EMBL AK110833             [ACGGCGGCGGCGGCGGCGGCGGCGGAGGGGGCGGAGGGCATGGGCATCAGCTGCAGGACGGGAGCGTGGACTTGCTGGCGCGGCACAGCAGCTCGCCGGCCGGATTCTTCTCCAACCTCATGGCCAGCAACGGCTTTCCAGGCTCAAAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACCACCACCCTTCCATGGCCGGCAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGTCCCAGCTGAGCTTCACGGCCGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCTTCCCCGACCGCGCCGGCGCCGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCAGCGGCGGCGGCGGGTTCTCCATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCACCCTCGGCGGGTACGAGTCCCAGTTCGGCGGCATGGCGAGCACGTCGGCGCTGGAGATGGCCGGCATGGACAGGTACCTGCAGCTGCAGCATGACCAGGTGCCGTTCAAAGTGCGGGCCAAGCGCGGCTGCGCGACGCACCCCAGGAGCATCGCGGAGAGGGTACGTACGCAATATCATGATCAAAACGCCTCTATATTTGCTTTTGCTTTCTCTTCAGATCTTGACACATGAGCATGTACGTCGGTGTGATCGATGCGCGTCCGTAGGAACGGAGGACGAGAATTAGCGAGAAGCTCAGGAAGCTGCAGGAGCTGGTGCCCAACATGGACAAGCAAACAAGCACAGCGGACATGTTGGACCTTGCAGTTGAGCACATCAAGGGTCTGCAGAGCCAGCTGCAGGCTCTGAAGCATGAGCAGGAGAAGTGCACTTGCTGCAGCAGGCCTTGATTGATGAAGCAGTGAGACGGCGAAACTGAAAGGTATCTATCCTTAGTTTGGAACCCTGATTACGGATGATACTTTCATATTTCCTTGAGAGTAACGCATGCGTGGATGCATGAACCAATTAATGTCAGTGACACAATCCAAATCGACCGTGAGCATTTTGTCGAAATGTGTAAATTGTTAGATAGGACATGGCAAGGGACATGTATATGCATGCCTGCATGCATGAGTGAGTGCAT GGA GCTAGCTACTCCGAAATAGCGGGGTGCAGCCATT GTGATCCCTTAATTAATTCTCGATCCACTGATGATTAATTAGCTTGTAATTCTGTCTTTAAACCTTTTTTTTAATGAC                            ]
[-] EMBL CB238451             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTAGGAACGGAAGACGAGAATTAGCGAGAAGCTCAGGAAGCTGCAGGAGCTGGTGCCCAACATGGACAAGCAAACAAGCACAGCGGACATGTTGGACCTTGCAGTTGAGCACATCAAGGGTCTGCAGAGCCAGCTGCAGGCTCCGAAGCATGAGCAGGAGAAGTGCACTTGCTGCAGCAGGCCTTGATTGATGAAGCAGTGAGACGGCGAAACTGGAAGGTATCTATCCTTAGTTCGGAACCCTGATTATGGATGATACTTTCATATTTCCTTGAGAGTAACGCATGCGTGGATGCATG                                                                                                                                                                                                                                                                              ]
[+] EMBL C74641               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGTNAGACGGCGAAACTGAAAGGTATCTATCCTTAGTTTGGAACCCTGATTACGGATGATACTTTCATATTTCCTTGAGAGTTACGCATGCNTGGATGCATGAACCAATTAATGTCAGTNACACAATCCAAATCGACCGTTAGCCTTTTGTCGAAATGTGTNAATTGTTAGATAGGACATGGCAAGGGACATGTATATGCATGCCTGCATGCATGAGTTAGTTCATGGGAGGCNAGCTACTCCGAAATAGCGGGGTGCAGCAATTGGTGATCCCTTAATTAANTCTCGAT                                                                                  ]
[+] EMBL AU069835             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGAGACGGCGAAACTGAAAGGTATCTATCCTTAGTTTGGAACCCTGATTACGGATGATACTTTCATATTTCCTTGAGAGTAACGCATGCGTGGATGCATGAACCAATTAATGTCAGTGACACAATCCAAATCGACCGTNAGCATTTTGTCGAAATGTGTAAATTGTTAGATAGGACATGGCAAGGGACATGTATATGCATGCCTGCATGCATGAGTGAGTGCAT GGA GCTAGCTACTCCGAAATAGCGGGGTGCAGCCATT GTNATCCCTTAATTAATTCTCGATCCACTGATGATTAATTAGCTTGTAATTCTGTCTTTAAACCTTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATGNAATTT]


>consensus_11309#0 ACGGCGGCGGCGGCGGCGGCGGCGGAGGGGGCGGAGGGCATGGGCATCAGCTGCAGGACG GGAGCGTGGACTTGCTGGCGCGGCACAGCAGCTCGCCGGCCGGATTCTTCTCCAACCTCA TGGCCAGCAACGGCTTTCCAGGCTCAAAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACC ACCACCCTTCCATGGCCGGCAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGT CCCAGCTGAGCTTCACGGCCGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCT TCCCCGACCGCGCCGGCGCCGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCA GCGGCGGCGGCGGGTTCTCCATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCA CCCTCGGCGGGTACGAGTCCCAGTTCGGCGGCATGGCGAGCACGTCGGCGCTGGAGATGG CCGGCATGGACAGGTACCTGCAGCTGCAGCATGACCAGGTGCCGTTCAAAGTGCGGGCCA AGCGCGGCTGCGCGACGCACCCCAGGAGCATCGCGGAGAGGGTACGTACGCAATATCATG ATCAAAACGCCTCTATATTTGCTTTTGCTTTCTCTTCAGATCTTGACACATGAGCATGTA CGTCGGTGTGATCGATGCGCGTCCGTAGGAACGGAGGACGAGAATTAGCGAGAAGCTCAG GAAGCTGCAGGAGCTGGTGCCCAACATGGACAAGCAAACAAGCACAGCGGACATGTTGGA CCTTGCAGTTGAGCACATCAAGGGTCTGCAGAGCCAGCTGCAGGCTCTGAAGCATGAGCA GGAGAAGTGCACTTGCTGCAGCAGGCCTTGATTGATGAAGCAGTGAGACGGCGAAACTGA AAGGTATCTATCCTTAGTTTGGAACCCTGATTACGGATGATACTTTCATATTTCCTTGAG AGTAACGCATGCGTGGATGCATGAACCAATTAATGTCAGTGACACAATCCAAATCGACCG TGAGCATTTTGTCGAAATGTGTAAATTGTTAGATAGGACATGGCAAGGGACATGTATATG CATGCCTGCATGCATGAGTGAGTGCATGGAGCTAGCTACTCCGAAATAGCGGGGTGCAGC CATTGTGATCCCTTAATTAATTCTCGATCCACTGATGATTAATTAGCTTGTAATTCTGTC TTTAAACCTTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATGNAATTT



consensusID : consensus_11309#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1091
fasta sequence
                              [ACAGCAGCTCGCCGGCCGGATTCTTCTCCAACCTCATGGCCAGCAACGGCTTTCCAGGCTCAAAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACCACCACCCTTCCATGGCCGGCAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGTCCCAGCTGAGCTTCACGGCCGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCTTCCCCGACCGCGCCGGCGCCGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCAGCGGCGGCGGCGGGTTCTCCATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCACCCTCGGCGGGTACGAGTCCCAGTTCGGCGGCATGGCGAGCACGTCGGCGCTGGAGATGGCCGGCATGGACAGGTACCTGCAGCTGCAGCATGACCAGGTGCCGTTCAAAGTGCGGGCCAAGCGCGGCTGCGCGACGCACCCCAGGAGCATCGCGGAGAGGGAACGGAGGACGAGAATTAGCGAGAAGCTCAGGAAGCTGCAGGAGCTGGTGCCCAACATGGACAAGCAAACAAGCACAGCGGACATGTTGGACCTTGCAGTTGAGCACATCAAGGGTCTGCAGAGCCAGCTGCAGGCTCTGAAGCATGAGCAGGAGAAGTGCACTTGCTGCAGCAGGCCTTGATTGATGAAGCAGTGAGACGGCGAAACTGAAAGGTATCTATCCTTAGTTTGGAACCCTGATTACNGATGATACTTTCATATTTCCTTGAGAGTAACGCATGCGTGGATGCATGAAACCATTAATGTCAGTGACACAATCCAAATCGACCGTGAGCA-TTTGTCGAAATGTGTAAATTGTTAGATAGGACATGGCAAGGGACATGTATATGCATGCCTGCATGCATGAGTGAGTGCATGAAGCTAGCTACTCCGAAATAGCGGGGTGCAGCCATTGTGATCCCTTAATTAATTCTCGATCCACTGATGATTAATTAGCTTGTAATTCTGTCTTTAAACCTTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATGAAATTTTGGTCAGCATGCAGAAAGAACTAAAAAAAAAGG]

[+] EMBL CB657901             [ACAGCAGCTCGCCGGCCGGATTCTTCTCCAACCTCATGGCCAGCAACGGCTTTCCAGGCTCAAAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACCACCACCCTTCCATGGCCGGCAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGTCCCAGCTGAGCTTCACGGCCGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCTTCCCCGACCGCGCCGGCGCCGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCAGCGGCGGCGGCGGGTTCTCCATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCACCCTCGGCGGGTACGAGTCCCAGTTCGGCGGCATGGCGAGCACGTCGGCGCTGGAGATGGCCGGCATGGACAGGTACCTGCAGCTGCAGCATGACCAGGTGCCGTTCAAAGTGCGGGCCAAGCGCGGCTGCGCGACGCACCCCAGGAGCATCGCGGAGAGGGAACGGAGGACGAGAATTAGCGAGAAGCTCAGGAAGCTGCAGGAGCTGGTGCCCAACATGGACAAGCAAACAAGCACAGCGGACATGTTGGACCTTGCAGTTGAGCACATCAAGGGTCTGCAGAGCCAGCTGCAGGCTCTGAAGCATGAGCAGGAGAAGTGCACTTGCTGCAGCAGGCCTTGATTGATGAAGCAGTGAGACGGCGAAACTGAAAGGTATCTATCCTTAGTTTGGAACCCTGATTACNGATGATACTTTCATATTTCCTTGAGAGTAACGCATGCGTGGATGCATGAAACCATTAATGTCAGTGACACAATCCAAATCGACCGTGAGCA TTTGTCG                                                                                                                                                                                                                                                         ]
[-] EMBL CB657902             [                                                                                                                                                                                                                                                                                                                                      ATCATCTCCACCCTCGGCGGGTACGAGTCCCAGTTCGGCGGCATGGCGAGCACGTCGGCGCTGGAGATGGCCGGCATGGACAGGTACCTGCAGCTGCAGCATGACCAGGTGCCGTTCAAAGTGCGGGCCAAGCGCGGCTGCGCGACGCACCCCAGGAGCATCGCGGAGAGGGAACGGAGGACGAGAATTAGCGAGAAGCTCAGGAAGCTGCAGGAGCTGGTGCCCAACATGGACAAGCAAACAAGCACAGCGGACATGTTGGACCTTGCAGTTGAGCACATCAAGGGTCTGCAGAGCCAGCTGCAGGCTCTGAAGCATGAGCAGGAGAAGTGCACTTGCTGCAGCAGGCCTTGATTGATGAAGCAGTGAGACGGCGAAACTGAAAGGTATCTATCCTTAGTTTGGAACCCTGATTACGGATGATACTTTCATATTTCCTTGAGAGTAACGCATGCGTGGATGCATGAACCAATTAATGTCAGTGACACAATCCAAATCGACCGTGAGCATTTTGTCGAAATGTGTAAATTGTTAGATAGGACATGGCAAGGGACATGTATATGCATGCCTGCATGCATGAGTGAGTGCATGAAGCTAGCTACTCCGAAATAGCGGGGTGCAGCCATTGTGATCCCTTAATTAATTCTCGATCCACTGATGATTAATTAGCTTGTAATTCTGTCTTTAAACCTTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATGAAATTTTGGTCAGCATGCAGAAAGAACTAAAAAAAAAGG]


>consensus_11309#1 ACAGCAGCTCGCCGGCCGGATTCTTCTCCAACCTCATGGCCAGCAACGGCTTTCCAGGCT CAAAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACCACCACCCTTCCATGGCCGGCAGCG GCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGTCCCAGCTGAGCTTCACGGCCGGGC CGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCTTCCCCGACCGCGCCGGCGCCGAGG CCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCAGCGGCGGCGGCGGGTTCTCCATCG TCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCACCCTCGGCGGGTACGAGTCCCAGT TCGGCGGCATGGCGAGCACGTCGGCGCTGGAGATGGCCGGCATGGACAGGTACCTGCAGC TGCAGCATGACCAGGTGCCGTTCAAAGTGCGGGCCAAGCGCGGCTGCGCGACGCACCCCA GGAGCATCGCGGAGAGGGAACGGAGGACGAGAATTAGCGAGAAGCTCAGGAAGCTGCAGG AGCTGGTGCCCAACATGGACAAGCAAACAAGCACAGCGGACATGTTGGACCTTGCAGTTG AGCACATCAAGGGTCTGCAGAGCCAGCTGCAGGCTCTGAAGCATGAGCAGGAGAAGTGCA CTTGCTGCAGCAGGCCTTGATTGATGAAGCAGTGAGACGGCGAAACTGAAAGGTATCTAT CCTTAGTTTGGAACCCTGATTACNGATGATACTTTCATATTTCCTTGAGAGTAACGCATG CGTGGATGCATGAAACCATTAATGTCAGTGACACAATCCAAATCGACCGTGAGCATTTGT CGAAATGTGTAAATTGTTAGATAGGACATGGCAAGGGACATGTATATGCATGCCTGCATG CATGAGTGAGTGCATGAAGCTAGCTACTCCGAAATAGCGGGGTGCAGCCATTGTGATCCC TTAATTAATTCTCGATCCACTGATGATTAATTAGCTTGTAATTCTGTCTTTAAACCTTTT TTTTAATGACGAGGGGAGAGAAAAAGAAAATGAAATTTTGGTCAGCATGCAGAAAGAACT AAAAAAAAAGG



consensusID : consensus_11309#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 699
fasta sequence
                              [AGGCTCCCAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACCACCACCCTTCCATGGCCGGCAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGTCCCAGCTGAGCTTCACGGCCGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCTTCCCCGACCGCGCCGGCGCCGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCAGCGGCGGCGGCGGGTTCTCCATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCACCCTCGGCGGGTACGAGTCCCAGGTAAAGATTGCTCGGCGAATTTGATTGCTAGGGCTACCTTCATTGAATCATTGTACACTACAGGGCTTCTTGATCTCTTCATCCCTTGTTTATATTTACTAACATTCATAAGAATTTGGACACATGTATGAAACACATACATTTATACATGTATGAATCTATTCAAAACTCAAAACAACTTATAATAATTAATGTAAAACAGAGGAAGAAGTAGTAGCTAGCTTTGCTGTGTTTGTGATATATATATATATATATATATATATATATATATATATATATATATATATATCGCGATGTGCTCTTGATTTCTTGGGCGCGTTGGAAATGGGGGCACATCGGCGGCATGGCGAGCACCTCCGCGCTCGAGATGGCCGGCATGTGACACGTATCTGCAG]

[+] EMBL CB652264             [AGGCTCCCAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACCACCACCCTTCCATGGCCGGCAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGTCCCAGCTGAGCTTCACGGCCGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCTTCCCCGACCGCGCCGGCGCCGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCAGCGGCGGCGGCGGGTTCTCCATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCACCCTCGGCGGGTACGAGTCCCAGGTAAAGATTGCTCGGCGAATTTGATTGCTAGGGCTACCTTCATTGAATCATTGTACACTACAGGGCTTCTTGATCTCTTCATCCCTTGTTTATATTTACTAACATTCATAAGAATTTGGACACATGTATGAAACACATACATTTATACATGTATGAATCTATTCAAAACTCAAAACAACTTATAATAATTAATGTAAAACAGAGGAAGAAGTAGTAGCTAGCTTTGCTGTGTTTGTGATATATATATATATATATATATATATATATATATATATATATATATATATATCGCGATGTGCTCTTGATTTCTTGGGCGCGTTGGAAATGGGGGCACATCGGCGGCATGGCGAGCACCTCCGCGCTCGAGATGGCCGGCATGTGACACGTATCTGCAG]


>consensus_11309#2 AGGCTCCCAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACCACCACCCTTCCATGGCCGG CAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGTCCCAGCTGAGCTTCACGGC CGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCTTCCCCGACCGCGCCGGCGC CGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCAGCGGCGGCGGCGGGTTCTC CATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCACCCTCGGCGGGTACGAGTC CCAGGTAAAGATTGCTCGGCGAATTTGATTGCTAGGGCTACCTTCATTGAATCATTGTAC ACTACAGGGCTTCTTGATCTCTTCATCCCTTGTTTATATTTACTAACATTCATAAGAATT TGGACACATGTATGAAACACATACATTTATACATGTATGAATCTATTCAAAACTCAAAAC AACTTATAATAATTAATGTAAAACAGAGGAAGAAGTAGTAGCTAGCTTTGCTGTGTTTGT GATATATATATATATATATATATATATATATATATATATATATATATATATATCGCGATG TGCTCTTGATTTCTTGGGCGCGTTGGAAATGGGGGCACATCGGCGGCATGGCGAGCACCT CCGCGCTCGAGATGGCCGGCATGTGACACGTATCTGCAG



consensusID : consensus_11309#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence
                              [TGCGTGATGCATGGAACACAGATGTTGAAATGTGCCAAGTGGACCACACAATCCCACAATCCGACCCAGTGAGCACTTTTTTGTCGAAAATGTGTAAAATTGGTTAGAATTAGGAACACTGTTATATTGCATGCACTGCATGCATGAGTGAGTGCACTGGAGCTAGCTACTCGAAATAGCGGGGTCACCATTGTGATCCCTTAATTAATTCTCGATCCACCTGATGATTAATTAGCTTGTAATTCTGTCTTTAAACCCTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATG]

[+] EMBL BI809010             [TGCGTGATGCATGGAACACAGATGTTGAAATGTGCCAAGTGGACCACACAATCCCACAATCCGACCCAGTGAGCACTTTTTTGTCGAAAATGTGTAAAATTGGTTAGAATTAGGAACACTGTTATATTGCATGCACTGCATGCATGAGTGAGTGCACTGGAGCTAGCTACTCGAAATAGCGGGGTCACCATTGTGATCCCTTAATTAATTCTCGATCCACCTGATGATTAATTAGCTTGTAATTCTGTCTTTAAACCCTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATG]


>consensus_11309#3 TGCGTGATGCATGGAACACAGATGTTGAAATGTGCCAAGTGGACCACACAATCCCACAAT CCGACCCAGTGAGCACTTTTTTGTCGAAAATGTGTAAAATTGGTTAGAATTAGGAACACT GTTATATTGCATGCACTGCATGCATGAGTGAGTGCACTGGAGCTAGCTACTCGAAATAGC GGGGTCACCATTGTGATCCCTTAATTAATTCTCGATCCACCTGATGATTAATTAGCTTGT AATTCTGTCTTTAAACCCTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11309#0      ACGGCGGCGGCGGCGGCGGCGGCGGAGGGGGCGGAGGGCATGGGCATCAGCTGCAGGACG 60
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      ------------------------------------------------------------
consensus_11309#2      ------------------------------------------------------------
                                                                                   

consensus_11309#0      GGAGCGTGGACTTGCTGGCGCGGCACAGCAGCTCGCCGGCCGGATTCTTCTCCAACCTCA 120
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      ------------------------ACAGCAGCTCGCCGGCCGGATTCTTCTCCAACCTCA 36
consensus_11309#2      ------------------------------------------------------------
                                                                                   

consensus_11309#0      TGGCCAGCAACGGCTTTCCAGGCTCAAAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACC 180
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      TGGCCAGCAACGGCTTTCCAGGCTCAAAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACC 96
consensus_11309#2      ------------------------------------------------------------
                                                                                   

consensus_11309#0      ACCACCCTTCCATGGCCGGCAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGT 240
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      ACCACCCTTCCATGGCCGGCAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGT 156
consensus_11309#2      ------------------------------------------------------------
                                                                                   

consensus_11309#0      CCCAGCTGAGCTTCACGGCCGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCT 300
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      CCCAGCTGAGCTTCACGGCCGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCT 216
consensus_11309#2      ------------------------------------------------------------
                                                                                   

consensus_11309#0      TCCCCGACCGCGCCGGCGCCGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCA 360
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      TCCCCGACCGCGCCGGCGCCGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCA 276
consensus_11309#2      ------------------------------------------------------------
                                                                                   

consensus_11309#0      GCGGCGGCGGCGGGTTCTCCATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCA 420
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      GCGGCGGCGGCGGGTTCTCCATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCA 336
consensus_11309#2      ------------------------------------------------------------
                                                                                   

consensus_11309#0      CCCTCGGCGGGTACGAGTCCCAGTTCGGCGGCATGGCGAGCACGTCGGCGCTGGAGATGG 480
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      CCCTCGGCGGGTACGAGTCCCAGTTCGGCGGCATGGCGAGCACGTCGGCGCTGGAGATGG 396
consensus_11309#2      ------------------------------------------------------------
                                                                                   

consensus_11309#0      CCGGCATGGACAGGTACCTGCAGCTGCAGCATGACCAGGTGCCGTTCAAAGTGCGGGCCA 540
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      CCGGCATGGACAGGTACCTGCAGCTGCAGCATGACCAGGTGCCGTTCAAAGTGCGGGCCA 456
consensus_11309#2      ------------------------------------------------------------
                                                                                   

consensus_11309#0      AGCGCGGCTGCGCGACGCACCCCAGGAGCATCGCGGAGAGGGTACGTACGCAATATCATG 600
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      AGCGCGGCTGCGCGACGCACCCCAGGAGCATCGCGGAGAGGG------------------ 498
consensus_11309#2      -----AGGCTCCCAAGGCGGGGGAGGCAGCGGAGCCGAAGCCCACCACCACCCTTCCATG 55
                                                                                   

consensus_11309#0      ATCAAAACGCCTCTATATTTGCTTTTGCTTTCTCTTCAGATCTTGACACATGAGCATGTA 660
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      ------------------------------------------------------------
consensus_11309#2      GCCGGCAGCGGCAGCGGCAGCAGCAGCGGCGGGAGGAAGATGAAGTCCCAGCTGAGCTTC 115
                                                                                   

consensus_11309#0      CGTCGGTGTGATCGATGCGCGTCCGTAGGAACGGAGGACGAGAATTAGCGAGAAGCTCAG 720
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      -----------------------------AACGGAGGACGAGAATTAGCGAGAAGCTCAG 529
consensus_11309#2      ACGGCCGGGCCGCCGCACCTCTCGCACATCGCGGAGGACGGCGCCTTCCCCGACCGCGCC 175
                                                                                   

consensus_11309#0      GAAGCTGCAGGAGCTGGTGCCCAACATGGACAAGCAAACAAGCACAGCGGACATGTTGGA 780
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      GAAGCTGCAGGAGCTGGTGCCCAACATGGACAAGCAAACAAGCACAGCGGACATGTTGGA 589
consensus_11309#2      GGCGCCGAGGCCTCCGTGCCCCGCACCTTCTCCGCCGGCGGCAGCAGCGGCGGCGGCGGG 235
                                                                                   

consensus_11309#0      CCTTGCAGT-TGAGCACATCAAGGGTCTGCAGAGCCAGCTGCAGGCTCTGAAGCATGAGC 839
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      CCTTGCAGT-TGAGCACATCAAGGGTCTGCAGAGCCAGCTGCAGGCTCTGAAGCATGAGC 648
consensus_11309#2      TTCTCCATCGTCGGGCCGTGGGAGGAGTCCAGGGACATCATCTCCACCCTCGGCGGGTAC 295
                                                                                   

consensus_11309#0      AGGAGAAGTGCACTTGCTGCAGCAGGCCTTGATTGATGAAGCAGTGAGACGGCGAAACTG 899
consensus_11309#3      ------------------------------------------------------------
consensus_11309#1      AGGAGAAGTGCACTTGCTGCAGCAGGCCTTGATTGATGAAGCAGTGAGACGGCGAAACTG 708
consensus_11309#2      GAGTCCCAGGTAAAGATTGCTCGGCGAATTTGATTGCTAGGGCTACCTTCATTGAATCAT 355
                                                                                   

consensus_11309#0      AAAGGTATCTATCCTTAGTTTGGAACCCTGATTACGGATGATACTTTCATA-TTTCCTTG 958
consensus_11309#3      ---------------------------------------------TGCGTG-ATGCATGG 14
consensus_11309#1      AAAGGTATCTATCCTTAGTTTGGAACCCTGATTACNGATGATACTTTCATA-TTTCCTTG 767
consensus_11309#2      TGTACACTACAGGGCTTCTTGATCTCTTCATCCCTTGTTTATATTTACTAACATTCATAA 415
                                                                    * *     * * *  

consensus_11309#0      AGAGT--AACGCATGC-GTGGATGCATGAACCAATTAATGTCAGTGACACAATCCAAATC 1015
consensus_11309#3      AAC-----ACAGATGT-TGAAATGTGCCAAGTGGACCACA-CAATCCCACAATCCGACCC 67
consensus_11309#1      AGAGT--AACGCATGC-GTGGATGCATGAAACCATTAATGTCAGTGACACAATCCAAATC 824
consensus_11309#2      GAATTTGGACACATGTATGAAACACATACATTTATACATG--TATGAATCTATTCAAAAC 473
                               **  ***      *       *       *      *    * ** * *  *

consensus_11309#0      GACCGTGAGCATTTTGTCGAAA-TGTGTAAATTGTTAGATAGGACATGGCAAGGGACATG 1074
consensus_11309#3      AGTGAGCACTTTTTTGTCGAAAATGTGTAAA--ATTGGTTAGAAT-TAGGAACACTGTTA 124
consensus_11309#1      GACCGTGAGCATTT-GTCGAAA-TGTGTAAATTGTTAGATAGGACATGGCAAGGGACATG 882
consensus_11309#2      TCAAAACAACTTATAATAATTA--ATGTAAA--ACAGAGGAAGAAGTAGTAGCTAGCTTT 529
                              *   * *  *    *   ******         *  *  * * *       * 

consensus_11309#0      TATATGCATGC-CTGCATGCATGAGTGAGTGCA-TGGAGCTAGCTACTCCGAAATAGCGG 1132
consensus_11309#3      TAT-TGCATGCACTGCATGCATGAGTGAGTGCACTGGAGCTAGCTACTC-GAAATAGCGG 182
consensus_11309#1      TATATGCATGC-CTGCATGCATGAGTGAGTGCA-TGAAGCTAGCTACTCCGAAATAGCGG 940
consensus_11309#2      GCTGTGTTTGTGATATATATATATATATATATA-TATATATATATATATATATATATATA 588
                         * **  **   *  **  **   *   *  * *  *  **  **     * ***    

consensus_11309#0      GGTGCAGCCATTGTGATCCCTTAATTAATTCTCGATCCAC-TGATGATTAATTAGCTTGT 1191
consensus_11309#3      GGTC--ACCATTGTGATCCCTTAATTAATTCTCGATCCACCTGATGATTAATTAGCTTGT 240
consensus_11309#1      GGTGCAGCCATTGTGATCCCTTAATTAATTCTCGATCCAC-TGATGATTAATTAGCTTGT 999
consensus_11309#2      TAT---ATCGCGATGTGCTCTTGATT--TCTTGGGCGCGTTGGAAATGGGGGCACATCGG 643
                         *     *    **  * *** ***  *  * *   *    **         *  * * 

consensus_11309#0      AATTCTGTCTTTAAACCTTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATGNAATTT- 1250
consensus_11309#3      AATTCTGTCTTTAAACCCTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATG------- 293
consensus_11309#1      AATTCTGTCTTTAAACCTTTTTTTTAATGACGAGGGGAGAGAAAAAGAAAATGAAATTTT 1059
consensus_11309#2      CGGCATGGCGAGCACCTCCGCGCTCGAGATGGCCGGCATGTGACACGTATCTGCAG---- 699
                            ** *    * *       *  *    *  ** *    * * * *  **       

consensus_11309#0      --------------------------------
consensus_11309#3      --------------------------------
consensus_11309#1      GGTCAGCATGCAGAAAGAACTAAAAAAAAAGG 1091
consensus_11309#2      --------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)