These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1734 fasta sequence [AAAGTGACCGACTGAGAGGAGGAGGGTTCAGGAAGGAAGGAGAGGGAGAAGAAGAGGCAGCGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTCGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGAATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGACCTTCTTGTGTCAACTTCAAACCCAATGTTGCAGGTTAGGTCATGTGCTTACCATCCTAAGTACCGTGTTGGTGCGTTTGGGACATTCCCTTTACTAATGGGAAACAGGGTGCGTTCTGAGGATTATGGTGTCATGGGAGTAAGATACGGTTCAGAGAATCTATCATTTGGGTCTTCCTTTGTGCCATTTCCTGGATCTGCTGAACTACCCTCTGGAGCATGGTTGGTCGGGAGAAAAGGGAGCTTAAGTGCAGGAGTGCAATACAAGCCACTTAGTGGAAACAAACATCTTATGCCATATACAGATTGGAAGAACTGGAATTGTGCAATCAGTTATGGTGTAGGATTAACAAGCCCACTCAGTCCTTCCTTCATTTTTTCTCTAGAGCTTGCCAGAAGTACAGAGTTCATTGCATCGTTCTATCAACACATGGTTGTTCAAAGAAGGGTTAAAAACCCTTTTGAAGATGATCAGATTGTTGGAATCACAAACTACATTGATTTTGGGCTTGAATTGGCTACAAGGATTGATAAAGATAAACCATCAGAGAGTGCCAACAATTCCTTGTTTCAGTTTGCAGCAAGTTGGCAAGCTAATAAGAACTTCCTATTCAAGGGAAAGCTAGGTCCTTCCAAGTCTTCTGTAGCTTTGGCATTCAAGTCATGGTGGAGACCAT-CCTTCACATTTAGTGTCACAGCTGTGAACGATCATTTGAAGGGGACAAGATCATATGGATTTGGAATTCGTGTTGAGGATCTTAGACAGCCAAGTTACCAAAGGGCTGATCCAAACTATGTAATGCTAACACCAAGCAAGGAGCACTTGGCACCAGGTGTTTTGCGAGAGTACGGGAAGCGG-CCCATGTTCCAGGCAGAGGTTGATTCGGGCAACTATGAT-CA-TTTACCTACAGAG-TTG-AAGCCTAT-CAG-CAAGATATTCTA-GCAGTGG-CCGTTTTT-GGTCAATCCTTTGCTCAAAAGAACTTCACCCGGTACATCT-GAAAGG-CATCATCAAACGTAGGTCTGTTTCAACTTTGCAAGACAGTTGGTCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCTAGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAGATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCTACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATTTGAGGTACGTAATCAATTTGCATTTCATTTTTTGGACAAAAAAAAAAAAAAAAA] [+] EMBL CF315457 [AAAGTGACCGACTGAGAGGAGGAGGGTTCAGGAAGGAAGGAGAGGGAGAAGAAGAGGCAGCGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTCGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGGATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGACCTTCTTGTGTCAACTTCAAACCCAATGTTGCAGGTTAGGTCATGTGCTTACCATCCTAAGTACCGTGTTGGTGCGTTTGGGACATTCCCTTTACTAATGGGAAACAGGGTGCGTTCTGAGGATTATGGTGTCATGGGAGTAAGATACGGTTCAGAGAATCTATCATTTGGGTCTTCCTTTGTGCCATTTCCTGGATCTGCTGAACTACC ] [+] EMBL AK122027 [ TCAGGAAGGAAGGAGAGGGAGAAGAAGAGGCAGCGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTCGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGAATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGACCTTCTTGTGTCAACTTCAAACCCAATGTTGCAGGTTAGGTCATGTGCTTACCATCCTAAGTACCGTGTTGGTGCGTTTGGGACATTCCCTTTACTAATGGGAAACAGGGTGCGTTCTGAGGATTATGGTGTCATGGGAGTAAGATACGGTTCAGAGAATCTATCATTTGGGTCTTCCTTTGTGCCATTTCCTGGATCTGCTGAACTACCCTCTGGAGCATGGTTGGTCGGGAGAAAAGGGAGCTTAAGTGCAGGAGTGCAATACAAGCCACTTAGTGGAAACAAACATCTTATGCCATATACAGATTGGAAGAACTGGAATTGTGCAATCAGTTATGGTGTAGGATTAACAAGCCCACTCAGTCCTTCCTTCATTTTTTCTCTAGAGCTTGCCAGAAGTACAGAGTTCATTGCATCGTTCTATCAACACATGGTTGTTCAAAGAAGGGTTAAAAACCCTTTTGAAGATGATCAGATTGTTGGAATCACAAACTACATTGATTTTGGGCTTGAATTGGCTACAAGGATTGATAAAGATAAACCATCAGAGAGTGCCAACAATTCCTTGTTTCAGTTTGCAGCAAGTTGGCAAGCTAATAAGAACTTCCTATTCAAGGGAAAGCTAGGTCCTTCCAAGTCTTCTGTAGCTTTGGCATTCAAGTCATGGTGGAGACCAT CCTTCACATTTAGTGTCACAGCTGTGAACGATCATTTGAAGGGGACAAGATCATATGGATTTGGAATTCGTGTTGAGGATCTTAGACAGCCAAGTTACCAAAGGGCTGATCCAAACTATGTAATGCTAACACCAAGCAAGGAGCACTTGGCACCAGGTGTTTTGCGAGAGTACGGGAAGCGG CCCATGTTCCAGGCAGAGGTTGATTCGGGCAACTATGAT CA TTTACCTACAGAG TTG AAGCCTAT CAG CAAGATATTCTA GCAGTGG CCGTTTTT GGTCAATCCTTTGCTCAAAAGAACTTCACCCGGTACATCT GAAAGG CATCATCAAACGTAGGTCTGTTTCAACTTTGCAAGACAGTTGGTCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCTAGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAGATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCTACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATTTGAGGTACGTAATCAATTTGCATTTCA ] [+] EMBL OSC105241 [ GAGGCAGCGTGCGCACTCGGCTTCGTCAGANATGGGGATCTTCTGGAGCAAGGCGGA CNNCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTCGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCNTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGAATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCT ] [+] EMBL OS1447A [ TGCCAACAATTCCTTGTTTCAGTTTGCAGCAAGTTGGCAAGCTAATAAGAACTTCCTATTCAAGGGAAAGCTAGGTCCTTCCAAGTCTTCTGTAGCTTTGGCATTCAAGTCATGGTGGAGACCAT CCTTCACATTTAGTGTCACAGCTGTGAACGATCATTTGAAGGGGACAAGATCATATGGATTTGGAATTCGTGTTGAGGATCTTAGACAGCCAAGTTACCAAAGGGCTGATCCAAACTATGTAATGCTAACACCAAGCAAGGAGCACTTGGCACCAGGTGTTTTGCGAGAGTACGGGAAGCGG CCCATGTTCCAGGGAGAGGTTGATTCGGGCAACTATGAT CA TTTACCTACAGAG TTG AAGGCTAT CAG CAAGATATTCTAGGCAGTTG CCGTT ] [-] EMBL CF315458 [ CATTCAAGTCAGGGTGGAGACCATCCCTTCACATTTAGTGTCACAGCTGTGAACGATCATTTGAAGGGGACAAGATCATATGGATTTGGAATTCGTGTTGAGGATCTTAGACAGCCAAGTTACCAAAGGGCTGATCCAAACTATGTAATGCTAACACCAAGCAAGGAGCACTTGGCACCAGGTGTTTTGCGAGAGTACGGGAAGCGG CCCATGTTCCAGGCAGAGGTTGATTCGGGCAACTATGAT CA TTTACCTACAGAG TTG AAGCCTAT CAG CAAGATATTCTA GCAGTGG CCGTTTTT GGTCAATCCTTTGCTCAAAAGAACTTCACCCGGTACATCT GAAAGG CATCATCAAACGTAGGTCTGTTTCAACTTTGCAAGACAGTTGGTCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCTAGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAGATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCTACTCTTCTGCACTTCACAAAaaaa ] [+] EMBL C96651 [ AANCGGCCCCATTTTCCAGGCNGAGGTTGATCCGGGCAACTATGATCCATTTTNCCTACAGAGTTTGAAACCCTATCCAGCCAAGATATTCTA GCNGTGGCCCGTTTTTGGGTCAATCNTTTGCTCAAAAGAACTTCNCCCGGTACATCTGGAAAGGCCATCATCAAACGTNGGTCTGTTTCAACTTTGCAAGACAGTTGGNCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCTNGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTNGATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCTACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATTTGAGGTACGTAATCAATTTGCATTTCATTTTTTGGACAAAAAAAAAAAAAAAAA] [+] EMBL C98291 [ GTCAATCCTNTGCTCAAAAGAACTNCACCCGGTACATCT GAAAGG CATCATCAAACGTAGGTCTGTTNCAACTTTGCAAGACAGTTGGTCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCTAGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAGATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCTACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATTTGAGGTACGTAATCAATTTGCATTTCATTTTTaaaaaa ] consensusID : consensus_11326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [TTTTTTTTTTTTTTTTTGTTGTTTTTTGATTGATTGATAGGGATAATAAGATGCATCGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTTGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGGATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGACCTTCTTGTGTCAACTTCAAACC] [+] EMBL CF315454 [TTTTTTTTTTTTTTTTTGTTGTTTTTTGATTGATTGATAGGGATAATAAGATGCATCGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTTGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGGATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGACCTTCTTGTGTCAACTTCAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11326#0 AAAGTGACCGACTGAGAGGAGGAGGGTTCAGGAAGGAAGGAGAGGGAGAAGAAGAGGCAG 60 consensus_11326#1 ----TTTTTTTTTTTTTTTTTGTTGTTTTTTGATTGATTGATAGGGATAATAAGATGCAT 56 * * * * ** ** ** ** ***** ** **** *** consensus_11326#0 CGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCG 120 consensus_11326#1 CGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCG 116 ************************************************************ consensus_11326#0 CCGATGGTGCTCGTCCCGCCGCTCTTCGACTACCCACCCATCGCCGCCCGCACCAGGATG 180 consensus_11326#1 CCGATGGTGCTCGTCCCGCCGCTCTTTGACTACCCACCCATCGCCGCCCGCACCAGGATG 176 ************************** ********************************* consensus_11326#0 TCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGAC 240 consensus_11326#1 TCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGAC 236 ************************************************************ consensus_11326#0 TACTTTGATCATGCGGGGAATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCT 300 consensus_11326#1 TACTTTGATCATGCGGGGGATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCT 296 ****************** ***************************************** consensus_11326#0 CATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTA 360 consensus_11326#1 CATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTA 356 ************************************************************ consensus_11326#0 AAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGAC 420 consensus_11326#1 AAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGAC 416 ************************************************************ consensus_11326#0 CTTCTTGTGTCAACTTCAAACCCAATGTTGCAGGTTAGGTCATGTGCTTACCATCCTAAG 480 consensus_11326#1 CTTCTTGTGTCAACTTCAAACC-------------------------------------- 438 ********************** consensus_11326#0 TACCGTGTTGGTGCGTTTGGGACATTCCCTTTACTAATGGGAAACAGGGTGCGTTCTGAG 540 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 GATTATGGTGTCATGGGAGTAAGATACGGTTCAGAGAATCTATCATTTGGGTCTTCCTTT 600 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 GTGCCATTTCCTGGATCTGCTGAACTACCCTCTGGAGCATGGTTGGTCGGGAGAAAAGGG 660 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 AGCTTAAGTGCAGGAGTGCAATACAAGCCACTTAGTGGAAACAAACATCTTATGCCATAT 720 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 ACAGATTGGAAGAACTGGAATTGTGCAATCAGTTATGGTGTAGGATTAACAAGCCCACTC 780 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 AGTCCTTCCTTCATTTTTTCTCTAGAGCTTGCCAGAAGTACAGAGTTCATTGCATCGTTC 840 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 TATCAACACATGGTTGTTCAAAGAAGGGTTAAAAACCCTTTTGAAGATGATCAGATTGTT 900 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 GGAATCACAAACTACATTGATTTTGGGCTTGAATTGGCTACAAGGATTGATAAAGATAAA 960 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 CCATCAGAGAGTGCCAACAATTCCTTGTTTCAGTTTGCAGCAAGTTGGCAAGCTAATAAG 1020 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 AACTTCCTATTCAAGGGAAAGCTAGGTCCTTCCAAGTCTTCTGTAGCTTTGGCATTCAAG 1080 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 TCATGGTGGAGACCATCCTTCACATTTAGTGTCACAGCTGTGAACGATCATTTGAAGGGG 1140 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 ACAAGATCATATGGATTTGGAATTCGTGTTGAGGATCTTAGACAGCCAAGTTACCAAAGG 1200 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 GCTGATCCAAACTATGTAATGCTAACACCAAGCAAGGAGCACTTGGCACCAGGTGTTTTG 1260 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 CGAGAGTACGGGAAGCGGCCCATGTTCCAGGCAGAGGTTGATTCGGGCAACTATGATCAT 1320 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 TTACCTACAGAGTTGAAGCCTATCAGCAAGATATTCTAGCAGTGGCCGTTTTTGGTCAAT 1380 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 CCTTTGCTCAAAAGAACTTCACCCGGTACATCTGAAAGGCATCATCAAACGTAGGTCTGT 1440 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 TTCAACTTTGCAAGACAGTTGGTCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCT 1500 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 AGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAGATTATAG 1560 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 AAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCA 1620 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 TATGGTTCGGTCTACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATT 1680 consensus_11326#1 ------------------------------------------------------------ consensus_11326#0 TGAGGTACGTAATCAATTTGCATTTCATTTTTTGGACAAAAAAAAAAAAAAAAA 1734 consensus_11326#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||