These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1127 fasta sequence [TTTTTTTTTTTTTTTTTAACTACAACCATTGGC-TGTTGTTTTATTTCATTCTTTGTACACCGTTACAACATAGCAGACTTAGCAGCACTCACATATATATACCAACAAACACATATACATCATCCAAATGTTCCAATCGAGTACCTTCTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGTGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCATGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAGATGAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAGATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCATCTTCGTCCTTGGCATATAGTTCGACATAGCGGCGGAATGTAGGATCTTCAACAAGAGCCTTGTCAGTAGGCAACTTCAGAAGCCCTTCTGAATTCTCTTTCAGAAGCTCAATGAAATAGGAGTTGTCAAATTTCAGTGGATCCTTTGTCCAGGCACCATCAAATCCTGATCTTTCGGGACGAGCTTTCCCGAGAGTATGGCCGCCTGAGAGTGCTACTATGTCCTTGGCTGATAAG-CCATCCTGTAGAAGACTTCCCTCAAATGCGCAGCACCTTTCTTAGCATCTGGCAAACGGCCTTCCTCTGGGGAATCTGAAGAATCCCTCCTGCCAGGAACATAATCTATAGTTGGCCCACCGGTGACTTCAACGGCAACAAC-TCCGGCAAGCTGATACAGGTCAGCATAGGTAATCTTGGGATGCTTCTGTTTCATCGGTTCTAGCAGATCAATAGCAATCTTGATGCCC-CATTCGCGGCGTGGCTGTACTCCTGCGGGAACCTGATGGAGCCGTTGGGCCCTCCCGTCTTCGTCGCCTTGTCGTACGTGCCGGCGTCGTGCCACGCCAGGCGGAGCATGATGGGAGCGCAGCTCTTGCTGGCGATGAGGGCGCGCAGGTCGCGGCGCGCCCTCTCGACCTCCGCCATGTACTCCGCGTCCACTACC-GCGCCGCCGACATCGCCGCCGCTGTTGCTGACGATCCGAGGAGAGGTGATAGGTGGA] [-] EMBL AU182809 [TTTTTTTTTTTTTTTTTAACTACAACCATTGGC TGTTGTTTTATTTCATTCTTTGTACACCGTTACAACATAGCAGACTTAGCAGCACTCACATATATATACCAACAAACACATATACATCATCCAAATGTTCCAATCGAGTACCTTNTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGNGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCATGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAGATGAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAGATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCATCTTCGTCCTTGGCATATAGTTCGA ] [+] EMBL CA762784 [ TTTTTTTTTTTTTTTTAACTACAACCATTGGCGTGTTGTTTTATTTCATTCTTTGTACACCGTTACAACATAGCAAACTTAGTAGCACTAACATATATATACCAACAAACACATATACATCATCCAAATGTTCCAATCGAGTACCTTCTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGTGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCAGGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAAATAAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAAATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCATCTTCGTCCTTGGCATATAGTTCGACATAGCGGCGGAATGTAGGATCTTCAACAAGAGCCTTGTCAGTAGGCAACTTCAGAAGCCCTTCTGAATTCTCTTTCAGAAGCTCAATGAAATAGGAGTTGTCAAATTTCAGTGGATCCTTTGTCCAGGCACCATCAAATCCTGATCTTTCGGGACGAGCTTTCCCGAGAGTATGTCCGCCTGAGAGTGCTACTATGTCCTTGGCTGATAAG CCATCCTGTAGAAGACTTCCCTCAAATGCGCAGCACCTTTCTTAGCATCT ] [-] EMBL AU182789 [ TTTTTTTTTTTAACTACAACCATTGGC TGTTGTTTTATTTCATTCTTTGTACACCGTTACAACATAGCAGACTTAGCAGCACTCACATATATATACCAACAAACACATATACATCATCCAAATGTTCCAATCGAGTACCTTCTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGTGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCATGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAGATGAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAGATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCATCTTCGTCCTTGGCATATAGTTC ] [-] EMBL AU031659 [ TTTTTAACTACAACCATTGGC TGTTGTTTTATTTCATTCTTTGTACACCGTTACAACATAGCAGACTTAGCAGCACTCACATATATATACCAACAAACACATATACATCATCCAAATGTTCCAATCGAGTACCTTCTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGTGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCATGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAGATGAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAGATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCNTCTTCGTCCTTGGCATATAGTTCGACATAGCGGCGGAATGTAGGNTCTTCAACAAGAGCCTTGTCAGTAGGNAACTTCAGAAGCCCTTCTGNATTCTCTTTCAGAAGCTCAATGNAATAGGAGTTGTCAAATTTCAGTGGATCCTTTGTCCAGGNACCATNAAATCCTGATCTTTCGGGACGAGCTTTCCCGAGAGTATGGCCGCC ] [+] EMBL CB645629 [ GCACCCCTCGCATATGTATGACGACAAGAGGGTATACATCATCCAAATGTTCCAATCGAGTACCTTCTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGTGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCATGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAGATGAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAGATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCATCTTCGTCCTTGGCATATAGTTCGACATAGCGGCGGAATGTAGGATCTTCAACAAGAGCCTTGTCAGTAGGCAACTTCAGAAGCCCTTCTGAATTCTCTTTCAGAAGCTCAATGAAATAGGAGTTGTCAAATTTCAGTGGATCCTTTGTCCAGGCACCATCAAATCCTGATCTTTCGGGACGAGCTTTCCCGAGAGTATGGCCGCCTGAGAGTGCTACTATGTCCTTGTCTGATAAGCCCATCCTGTAGAAGACTTCCCTCAGATGCGCAGCACCTTTCTTAGCATCTGGCAAACGGCCTTCCTCTGGGGAATCTGAAGAATCCCTCCTGCCAGGAACATAATCTATAGTTGGCCCACCGGTGACTTCAACGGCAACAAC TCCGGCAAGCTGATACAGGTCAGCAT ] [-] EMBL C74417 [ GCATCTGG AAACGGCNTTCCTCT GGGAATCTGAAGAATCCCTCCTGCCAGGAACATAATCTATAG TGGCCCACCGGTGACTTCAACGGCAACAAC TCCGGCAAGCTGATACAGGTCAGCATAGGTAATCTTGGGATGCTTCTGTTTCATCGGTTCTAGCAGATCAATAGCAATCTTGATGCCC CATTCGCGGCGTGGCTGTACT CTGCGGGAACCTGATGGAGCCGTTGGGCCCTCCCGTCTTCGTCGCCTTGTCGTACGTGCCGGCGTCGTGCCACGCCAGGCGGAGCATGATGGGAGCGCAGCTCTTGCTGGCGATGAGGGCGCGCAGGTCGCGGCGCGCCCTCTCGACCTCCGCCATGTACTCCGCGTCCACTACC GCGCCGCCGACATCGCCGCCGCTGTTGCTGACGATCCGAGGAGAGGTGATAGGTGG ] [-] EMBL C74365 [ TTCCTTTGGGGAATCTGAANAATCCCTCCTGCAAGGAACATAATCTATAGTTGCCCCACCGGTGACTTCAACGGCAACAACNTCCGGCAAGCTGATACAGGTCAGCATAGGTAATCTTGGGATGCTTCTGTTTCATC GNTCTAGCAGATCAATAGCAATCTTGATGCCC CATTCGCGGNGTGGCTGTACTCCTGCGGGAACCTGATGGAGCCGTTGGGCCCTCCCGTCTTCGTCGCCTTGTCGTACGTGCCGGCGTCGTGCCACGCCAGGCGGAGCATGATGGGAGCGCAGCTCTTGCTGGCGATGAGGGNGCGCAGGTCGCGGCGCGCCNTCTCGACCTCCGCCATGTACTCCGCGTCCACTACC GCGCCGCCGACATCGCCGCCGCTGTTGCTGACGATCCGAGGAGAGGTGATAGGTGGA] [-] EMBL OSR02881A [ CCACCGGTGACTTCAACGGCAACAAC TCCGGCAAGCTGATACAGGTCAGCATAGGTAATCTTGGGATGCTTCTGTTTCATCGGTTCTAGCAGATCAATAGCAATCTTGATGCCCGCATTCGCGGCGTGGCTGTACTCCTGCGGGAACCTGATGGAGCCGTTGGGCCCTCCCGTCTTCGTCGCCTTGTCGTACGTGCCGGCGTCGTGCCACGCCAGGCGGAGCATGATGGGAGCGCAGCTCTTGCTGGCGATGAGGGCGCGCAGGTCGCGGCGCGCCCTCTCGACCTCCGCCATGTACTCCGCGTCCACTACCGGCGCCGCCGACATCGCCGCCGCTGTTGCTGACGATCCGAGGAGAGG ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||