These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11343#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1496 fasta sequence [GCACGCCGCGTGGAGCTTCGCCGAGGGGAGGTTCTCCCGCGGGGACGCCGTGCTCATGCTCCACTACGCGTACGGCGCCGTCAAGAAGTCCATCCACGCCTACGTCGCCCGCGCCGGGGCCACCGTCGTCGAGGTGCCGCTCCCGTTCCCCGTCGCGTCCGCGGACGCCATCATCGCCGAGTTCCGCGCCGCGCTCGATGTGGCCAAGGCCGGGGGGCGCAAGGTCCGCCTCGCGGTCATCGACCACATCACCTCCATGCCTAGCGTTGTCATCCCGGTGAAGGAGCTCGTTGCCATCTGCCGAGAAGAGGGTGTCGATAAGGTGTTTATAGATGCCGCGCACTCCATTGGGCAGGTCCCTGTTGATGTGCGCGATATTGGGGCCGATTTTTACACCAGCAATCTCCACAAGTGGTTCTTCTGCCCGCCTGCCGTGGCTTTCTGGCACACCCGAAAGGATGATCCGATAGCCTCCCAGCTCCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGATTGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCGATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGGTAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAGCATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAGAATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAA-GCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCA-CACCAAGTTTACAATGTA-ACGGAGGATTATGAG-AAGCTGAGGGATGCTGTCAATAAGCTTGTTG-CTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGA---AGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCAATGGC-GTTGCCAGTTCATGTAGTGTACTTTC-AGAAACTGACAGAAGTGTTGTATTTGCAATCCGTCCGTCACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAACAACAATAATCTGAATCCA-AGGAGAATTGCC-GCCGCTGTAGATTGAATTGAATGCTGGCTACCGATGATATCGTCAGAATGGCAATGGAATTGTGGTGAATCATCTTCAGAGAGATTAGGAGGGCCTGGAGCTGTGAAACATTTTGAAGCCTGGAGCCCCTACCTCATGTAGAGATTAGAGCTGGGGACAAGGGAATTGATGGCTTCTCTTTTGTGGCAAAAAAAA] [+] EMBL AK069735 [GCACGCCGCGTGGAGCTTCGCCGAGGGGAGGTTCTCCCGCGGGGACGCCGTGCTCATGCTCCACTACGCGTACGGCGCCGTCAAGAAGTCCATCCACGCCTACGTCGCCCGCGCCGGGGCCACCGTCGTCGAGGTGCCGCTCCCGTTCCCCGTCGCGTCCGCGGACGCCATCATCGCCGAGTTCCGCGCCGCGCTCGATGTGGCCAAGGCCGGGGGGCGCAAGGTCCGCCTCGCGGTCATCGACCACATCACCTCCATGCCTAGCGTTGTCATCCCGGTGAAGGAGCTCGTTGCCATCTGCCGAGAAGAGGGTGTCGATAAGGTGTTTATAGATGCCGCGCACTCCATTGGGCAGGTCCCTGTTGATGTGCGCGATATTGGGGCCGATTTTTACACCAGCAATCTCCACAAGTGGTTCTTCTGCCCGCCTGCCGTGGCTTTCTGGCACACCCGAAAGGATGATCCGATAGCCTCCCAGCTCCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGATTGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCGATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGGTAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAGCATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAGAATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAA GCTCAAGAAATGTCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCA CACCAAGTTTACAATGTA ACGGAGGATTATGAG AAGCTGAGGGATGCTGTCAATAAGCTTGTTG CTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGCAGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCAATGGC GTTGCCAGTTCATGTAGTGTACTTTC AGAAACTGACAGAAGTGTTGTATTTGCAATCCGTCCGTCACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAACAACAATAATCTGAATCCA AGGAGAATTGCC GCCGCTGTA ] [+] EMBL CB650020 [GCACGCCGCGTGGAGCTTCGCCGAGGGGAGGTTCTCCCGCGGGGACGCCGTGCTCATGCTCCACTACGCGTACGGCGCCGTCAAGAAGTCCATCCACGCCTACGTCGCCCGCGCCGGGGCCACCGTCGTCGAGGTGCCGCTCCCGTTCCCCGTCGCGTCCGCGGACGCCATCATCGCCGAGTTCCGCGCCGCGCTCGATGTGGCCAAGGCCGGGGGGCGCAAGGTCCGCCTCGCGGTCATCGACCACATCACCTCCATGCCTAGCGTTGTCATCCCGGTGAAGGAGCTCGTTGCCATCTGCCGAGAAGAGGGTGTCGATAAGGTGTTTATAGATGCCGCGCACTCCATTGGGCAGGTCCCTGTTGATGTGCGCGATATTGGGGCCGATTTTTACACCAGCAATCTCCACAAGTGGTTCTTCTGCCCGCCTGCCGTGGCTTTCTTGCACACCCGAAAGGATGATCCGATAGCCTCCCAGCTCCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGATTGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCGATTTGAAAGTGGCATCGAGGGAATAAGGAGCCGTAACCATG ] [-] EMBL CB678305 [ TTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGGTAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAGCATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAGAATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAA GCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCA CACCAAGTTTACAATGTA ACGGAGGATTATGAG AAGCTGAGGGATGCTGTCAATAAGCTTGTTG GTGATGGATTCACCAGCAGCAAGTTGCGGCCTTGGCAGA AGGAAACGATGGCTTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATGTAGATTTAGCCCGCCAATGGC GTTGCCAGTTCATGTAGTGTACTTTC AGAAACTGACAGAAGTGTTGTATTTGCAATCCGTCCGTCACAATAATGCTCTGGCATGTGTTCCCCCTTACCTTCATTTTCAAGCTGTAATGTAAGACCAACAATAATTTGTATTCA AGGAGAATTGCC GCCGTTGTAGATTGAATTGAATGCTGGCTACCGATGATTTTGTAAGGGTGGCAATGGAATTGTGGT ] [+] EMBL C28476 [ GGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAA GCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCA CACCAAGTTTACAATGTA ACGGAGGATTATGAG AAGCTGAGGGATGCTGTCAATAAGCTTGTTG CTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGA AGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACANNCAGCGCTNCGGTGTGATCTAGATTTAGCCCGCCAATGGC TTTGCCAGTTCATGTAGTGTACTTTC AG AACTNACAGAAGTGTTGTATTT CAATCCGTCCGTCACAATAATGCACTTGCATGTCTT CCCCTTACCCTCATT ] [+] EMBL AU091298 [ GAAAAGAGTAGAAGGCTCAAAGAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCACCACCAAGTTTACAATGAA ACGGAGGATTATGAGNAAGCTGAGGGATGCTGTCAATAAGCTTGTTGNTTGATGGATTCACCAGCAGCAAGTTNCGGCCTTCGCAGA AGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCAATGGCNGTTGCCAGTTCATGTAGTGTACTTTCAAGAAACTGACANAAGTGTTGTATTNGCAATCCGTCNGTCACAATAATGCANTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAACAACAATAATCTGAATCCA AGGAGAATTGCCAGCCGCTGTAGATTGAATTGAATGCTGGCTACCNATGATATCGTCA AATGGCAATGGAATTGTGGTGAATCATCTTCAGAGAGATTAGGAGGGCCTGGAGCTGTGAAACATTTTGAAGCCTGGAGCCCCTACCTCATGTAGAGATTAGAGCTGGGGACAAGGGAATTGATGGCTTCTCTTTTGTGGCAAAAAAAA] [+] EMBL BI798395 [ TCACAGGGTATGTTAGGATCTCA CACCAAGTTTAC ATGTATACGGAGGATTATGAG AAGCTGAGGGATGCTGTCAATAAGCTTGTTG CTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGCAGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGATATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCC ATGGC GTTGCCAGTTCATGTAGTGTACTTTC AGAAACTGACAGAAGTGTTGTATTTGCAATCCGTCCGTCACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAAC AC ATAATCTGAATCC AGGAGAATTGCC GCCGCTGTAGATTGAATTGAATGCTGGCTACCGATGATATCGTCAAAAa ] [+] EMBL BM421637 [ AGGATTATGAG AAGCTGAGGGATGCTGTCCATAAGCTTGTTG CTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGA AGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGATATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCCATGGC GTTGCCAGTTCATGTAGTGTACTTTC AGAAACTGACAGAAGTGTTGTATTTGC ATCCGTCCGTCACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAAC ACCATAATCTGAATCCACAGGAGAATTGCC GCCGCTGTAaaaaaaaaa ] consensusID : consensus_11343#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [GATAGCCTCCCAGCTCCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGATTGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCGATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGGTAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAGCATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAGAATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAAGCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCACACCAAGTTTACAATGTAACGGAGGATTATGAGAAGCTGAGGGATGCTGTCAATAAGCTTGTTGCTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCAATGGCGTTGCCAGTTCATGTAGTGTACTTTCAGAAACTGACAGAAGGGTTGTATTTGCAATCCGTCCGTCCCAATAAAAAAAAAAAAGA] [-] EMBL CB650021 [GATAGCCTCCCAGCTCCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGATTGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCGATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGGTAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAGCATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAGAATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAAGCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCACACCAAGTTTACAATGTAACGGAGGATTATGAGAAGCTGAGGGATGCTGTCAATAAGCTTGTTGCTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCAATGGCGTTGCCAGTTCATGTAGTGTACTTTCAGAAACTGACAGAAGGGTTGTATTTGCAATCCGTCCGTCCCAATAAAAAAAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11343#0 GCACGCCGCGTGGAGCTTCGCCGAGGGGAGGTTCTCCCGCGGGGACGCCGTGCTCATGCT 60 consensus_11343#1 ------------------------------------------------------------ consensus_11343#0 CCACTACGCGTACGGCGCCGTCAAGAAGTCCATCCACGCCTACGTCGCCCGCGCCGGGGC 120 consensus_11343#1 ------------------------------------------------------------ consensus_11343#0 CACCGTCGTCGAGGTGCCGCTCCCGTTCCCCGTCGCGTCCGCGGACGCCATCATCGCCGA 180 consensus_11343#1 ------------------------------------------------------------ consensus_11343#0 GTTCCGCGCCGCGCTCGATGTGGCCAAGGCCGGGGGGCGCAAGGTCCGCCTCGCGGTCAT 240 consensus_11343#1 ------------------------------------------------------------ consensus_11343#0 CGACCACATCACCTCCATGCCTAGCGTTGTCATCCCGGTGAAGGAGCTCGTTGCCATCTG 300 consensus_11343#1 ------------------------------------------------------------ consensus_11343#0 CCGAGAAGAGGGTGTCGATAAGGTGTTTATAGATGCCGCGCACTCCATTGGGCAGGTCCC 360 consensus_11343#1 ------------------------------------------------------------ consensus_11343#0 TGTTGATGTGCGCGATATTGGGGCCGATTTTTACACCAGCAATCTCCACAAGTGGTTCTT 420 consensus_11343#1 ------------------------------------------------------------ consensus_11343#0 CTGCCCGCCTGCCGTGGCTTTCTGGCACACCCGAAAGGATGATCCGATAGCCTCCCAGCT 480 consensus_11343#1 ---------------------------------------------GATAGCCTCCCAGCT 15 *************** consensus_11343#0 CCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGAT 540 consensus_11343#1 CCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGAT 75 ************************************************************ consensus_11343#0 TGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCG 600 consensus_11343#1 TGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCG 135 ************************************************************ consensus_11343#0 ATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGG 660 consensus_11343#1 ATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGG 195 ************************************************************ consensus_11343#0 TAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAG 720 consensus_11343#1 TAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAG 255 ************************************************************ consensus_11343#0 CATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAG 780 consensus_11343#1 CATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAG 315 ************************************************************ consensus_11343#0 AATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAG 840 consensus_11343#1 AATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAG 375 ************************************************************ consensus_11343#0 AAGAGTAGAAGCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGT 900 consensus_11343#1 AAGAGTAGAAGCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGT 435 ************************************************************ consensus_11343#0 TAGGATCTCACACCAAGTTTACAATGTAACGGAGGATTATGAGAAGCTGAGGGATGCTGT 960 consensus_11343#1 TAGGATCTCACACCAAGTTTACAATGTAACGGAGGATTATGAGAAGCTGAGGGATGCTGT 495 ************************************************************ consensus_11343#0 CAATAAGCTTGTTGCTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGGAAAC 1020 consensus_11343#1 CAATAAGCTTGTTGCTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGGAAAC 555 ************************************************************ consensus_11343#0 GATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGAC 1080 consensus_11343#1 GATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGAC 615 ************************************************************ consensus_11343#0 TACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCC 1140 consensus_11343#1 TACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCC 675 ************************************************************ consensus_11343#0 AATGGCGTTGCCAGTTCATGTAGTGTACTTTCAGAAACTGACAGAAGTGTTGTATTTGCA 1200 consensus_11343#1 AATGGCGTTGCCAGTTCATGTAGTGTACTTTCAGAAACTGACAGAAGGGTTGTATTTGCA 735 *********************************************** ************ consensus_11343#0 ATCCGTCCGTCACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGT 1260 consensus_11343#1 ATCCGTCCGTCCCAATAAAAAAAAAAAAGA------------------------------ 765 *********** ****** * * consensus_11343#0 AATGTAAGAACAACAATAATCTGAATCCAAGGAGAATTGCCGCCGCTGTAGATTGAATTG 1320 consensus_11343#1 ------------------------------------------------------------ consensus_11343#0 AATGCTGGCTACCGATGATATCGTCAGAATGGCAATGGAATTGTGGTGAATCATCTTCAG 1380 consensus_11343#1 ------------------------------------------------------------ consensus_11343#0 AGAGATTAGGAGGGCCTGGAGCTGTGAAACATTTTGAAGCCTGGAGCCCCTACCTCATGT 1440 consensus_11343#1 ------------------------------------------------------------ consensus_11343#0 AGAGATTAGAGCTGGGGACAAGGGAATTGATGGCTTCTCTTTTGTGGCAAAAAAAA 1496 consensus_11343#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||