These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 831 fasta sequence [TAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGTCAAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCCCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACT--CTTG-CGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGGAGGGAATTCCCCCGG-ACCAGCAGCGCCTCATCTTTGCAGACAAGCAGCTCGAGGATGGGACGTACACTGGCTNATTACAACATTCAGAAGGTNGTCCACCTTGCNCCTGGTGCTCCGCCTCCGTGTGGCCGGTTCGGTTCAGATGTTTTGTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGANGTTTGTGATGGTGTTNGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTNGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGGATATGTGTTCTTTATTTCCNGAAAACGGTATGCTTGTGCCATTAGACTTTGCTCAAGGNACAAGNNGTTCTAGAATTTCAGTGANATATTGGTGCTAAAAAAAAAAA] [+] EMBL CF336159 [TAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGTCAAGATGCAGATCTTTGTGAAGACACTCACTGGC AGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCCCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTNNNTTG CGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGGAGGGAATTCCCCCGG ACCAGCAGCGCCTCATCTTTGCAGACAAGCAGCTCGAGGATGGGACGTACACTGGCT ] [+] EMBL CF336669 [TAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGTCAAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCCCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACT CTTG CGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAA GGAGGGAATTCCCCCGG ACCAGCAGCGCCTCATCTTTGCAGACAAGCAGCTCGAGGATGGGACGTACACTGGCT ] [+] EMBL CF336230 [TAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGTCAAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCCCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACT CTTG CGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGGAGGGAATTCCCCCGG ACCAGCAGCGCCTCATCTTTGCAGACAA ] [+] EMBL AU176502 [ TGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACT CTTG CGGTCGAGTCCTCGGACAAG ] [+] EMBL C97178 [ GAAGACCTTGACAGGAAAGACCATCACT CTTGCCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCNAAGATTCAGGACAA GGNGGGAATTCCCCCGGAACCAGCAGCGCCTCATCTTTGCAGACAAGCNGCTCGAGGAT GGACGTACACTGGCTNATTACAACATTCAGAAGGTNGTCCACCTTGCNCCTGGTGCTCCGCCTCCGTGTGGCCGGTTCGGTTCAGATGTTTTGTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGANGTTTGTGATGGTGTTNGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTNGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGGATATGTGTTCTTTATTTCCNGAAAACGGTATGCTTGTGCCATTAGACTTTGCTCAAGGNACAAGNNGTTCTAGAATTTCAGTGANATATTGGTGCTAAAAAAAAAAA] consensusID : consensus_11358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 472 fasta sequence [GGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATT-CCCCCGGACCAGCAGCGCCTCATTTTTGCAGACAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAACATTCAGAAGGAGTCCCCCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTAGGTTCAGATGTTTTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTAGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGG-ATATGTGTTCTTTATTTCCAGAAAAAAAAAAAAAAAAAAA] [-] EMBL CF336231 [GGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATT CCCCCGGACCAGCAGCGCCTCATTTTTGCAGACAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAACATTCAGAAGGAGTCCCCCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTAGGTTCAAATGTTTTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTAGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGGAATATGTGTTCTTTATTTCCAGAAAAAAAAAAAAAAAAAAA] [-] EMBL CF336670 [ CATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATT CCCCCGGACCAGCAGCGCCTCATTTTTGCAGACAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAACATTCAGAAGGAGTCCCCCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTAGGTTCAGATGTTTTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTTTAGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGG ATATGTGTTCTTTATTTCCAGAAAAAAAAAAAAAAAAAAA] [-] EMBL CF336160 [ CATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCCCCCGGACCAGCAGCGCCTCATCTTTGCAGACAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAACATTCAGAAGGAGTCCACCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTAGGTTCAGATGTTTTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTAGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGG ATATGTGTTCTTTATTTCCAGAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11358#0 TAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGT 60 consensus_11358#1 ------------------------------------------------------------ consensus_11358#0 CAAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTC 120 consensus_11358#1 ------------------------------------------------------------ consensus_11358#0 CTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGA 180 consensus_11358#1 ------------------------------------------------------------ consensus_11358#0 CCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTA 240 consensus_11358#1 ------------------------------------------------------------ consensus_11358#0 CAACATCCAGAAGGAGTCCACCCCCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGAT 300 consensus_11358#1 -------------------------------------------------GGCATGCAGAT 11 *********** consensus_11358#0 CTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGAT 360 consensus_11358#1 CTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGAT 71 ************************************************************ consensus_11358#0 CGACAATGTGAAGGCGAAGATTCAGGACAAGGGAGGGAATTCCCCCGGACCAGCAGCGCC 420 consensus_11358#1 CGACAATGTGAAGGCGAAGATTCAGGACAAGG-AGGGAATTCCCCCGGACCAGCAGCGCC 130 ******************************** *************************** consensus_11358#0 TCATCTTTGCAGACAAGCAGCTCGAGGATGGGACGTACACTGGCTNATTACAACATTCAG 480 consensus_11358#1 TCATTTTTGCAGACAAGCAGCTCGAGGATGG-ACGTACACTGGCTGATTACAACATTCAG 189 **** ************************** ************* ************** consensus_11358#0 AAGGTNGTCCACCTTGCNCCTGGTGCTCCGCCTCCGTGTGGCCGGTTCGGTTCAGATGTT 540 consensus_11358#1 AAGG-AGTCCCCCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTA-GGTTCAGATGTT 247 **** **** ****** **************************** ************ consensus_11358#0 TTG-TACGCCTGGTGGGCGGTGGCTTTGCGCAAATGANGTTTGTGATGGTGTTNGTTTCA 599 consensus_11358#1 TTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCA 307 *** ********************************* *************** ****** consensus_11358#0 AGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTNGT 659 consensus_11358#1 AGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTAGT 367 ********************************************************* ** consensus_11358#0 TAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTAT 719 consensus_11358#1 TAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTAT 427 ************************************************************ consensus_11358#0 TCTGGATATGTGTTCTTTATTTCCNGAAAACGGTATGCTTGTGCCATTAGACTTTGCTCA 779 consensus_11358#1 TCTGGATATGTGTTCTTTATTTCCAGAAAAAAAAAAAAAAAAAAA--------------- 472 ************************ ***** * consensus_11358#0 AGGNACAAGNNGTTCTAGAATTTCAGTGANATATTGGTGCTAAAAAAAAAAA 831 consensus_11358#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||