|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1083 fasta sequence
[CCTCTCCCCCTCTTCCGCCCCAACCTCCAACCTCACCTCGTCGTCGCCACGGCCTCCCTCGCGAGTTCGCCGTGGAACACCCGATGGGCTCCGGCGAGGACACCGGCGCGGGCGTCGCGGGAGGAGGGGGAGGCGGAGGCGCCGGTGGGGTGGTGCGGGGCGCGGTGCTGAAGGCGCTCGTGGTCGTCGGCGGCGTGCTGCTGCTCCGGCGGCTGCGCCGCTCCACCACCCGGTGGGACCACGCCCGCGCCGTCGTGGACGCGCTCTCCGGTGAGAAGTTCTCGAGGGAGCAGGCGAGGAAGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGACATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGACGATGATGGGAATCAGGTTTGGGGAACCAAAGCTGGCCCTTACGAGTTCAAGCCTGCCCCCAAGTCGAATTACGACGACATGTTCTCGCCGTTGAATTTTTCTGCTCCATTGACGCTGGAGAAGAAGATTGAGAGCTCGTTCGCAATCGATGATCAGTAGTATATTAGTATGTACATACAGTT-CATGTACCTCTCTCTCTTTTTTTTTAATTTAAGAAAACTAAGCAGAAAAAACTGCCTTCGTTTAGTATATAGCCCCGTGTACTGAATTTTGTTGCTAAGAAATGCAATAAAAAGTAGCGTTGCATGTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK106093 [CCTCTCCCCCTCTTCCGCCCCAACCTCCAACCTCACCTCGTCGTCGCCACGGCCTCCCTCGCGAGTTCGCCGTGGAACACCCGATGGGCTCCGGCGAGGACACCGGCGCGGGCGTCGCGGGAGGAGGGGGAGGCGGAGGCGCCGGTGGGGTGGTGCGGGGCGCGGTGCTGAAGGCGCTCGTGGTCGTCGGCGGCGTGCTGCTGCTCCGGCGGCTGCGCCGCTCCACCACCCGGTGGGACCACGCCCGCGCCGTCGTGGACGCGCTCTCCGGTGAGAAGTTCTCGAGGGAGCAGGCGAGGAAGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGACATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGACGATGATGGGAATCAGGTTTGGGGAACCAAAGCTGGCCCTTACGAGTTCAAGCCTGCCCCCAAGTCGAATTACGACGACATGTTCTCGCCGTTGAATTTTTCTGCTCCATTGACGCTGGAGAAGAAGATTGAGAGCTCGTTCGCAATCGATGATCAGTAGTATATTAGTATGTACATACAGTT CATGTACCTCTCTCTCTTTTTTTTTAATTTAAGAAAACTAAGCAGAAAAAACTGCCTTCGTTTAGTATATAGCCCCGTGTACTGAATTTTGTTGCTAAGAAATGCAATAAAAAGTAG ]
[+] EMBL CB643520 [ CACCTCCTCGTCGCCACGGCCTCCCTCGCGAGTTCGCCGTGGAACACCCGATGGGCTCCGGCGAGGACACCGGCGCGGGCGTCGCGGGAGGAGGGGGAGGCGGAGGCGCCGGTGGGGTGGTGCGGGGCGCGGTGCTGAAGGCGCTCGTGGTCGTCGGCGGCGTGCTGCTGCTCCGGCGGCTGCGCCGCTCCACCACCCGGTGGGACCACGCCCGCGCCGTCGTGGACGCGCTCTCCGGTGAGAAGTTCTCGAGGGAGCAGGCGAGGAAGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGACGAAGTCCTTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTG ]
[+] EMBL CA754571 [ CCCTCGCGAGTTCGCCGTGGAACACCCGATGGGCTCCGGCGAGGACACCGGCGCGGGCGTCGCGGGAGGAGGGGGAGGCGGAGGCGCCGGTGGGGTGGTGCGGGGCGCGGTGCTGAAGGCGCTCGTGGTCGTCGGCGGCGTGCTGCTGCTCCGGCGGCTGCGCCGCTCCACCACCCGGTGGGACCACGCCCGCGCCGTCGTGGACGCGCTCTCCGGTGAGAAGTTCTCGAGGGAGCAGGCGAGGAAGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCNACAGC ]
[-] EMBL CB643521 [ AGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGACATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGACGATGATGGGAATCAGGTTTGGGGAACCAAAGCTGGCCCTTACGAGTTCAAGCCTGCCCCCAAGTCGAATTACGACGACATGTTCTCGCCGTTGAATTTTTCTGCTCCATTGACGCTGGAGAAGAAGATTGAGAGCTCGTTCGCAATCGATGATCAGTAGTATATTAGTATGTACATACAGTT CATGTACCTCTCTCTC TTTTTTTTAAGGTAAGAAAACTAAGCAGAAAAAACTGCCTTCGTTTAGTATATAGCCCCGTGTACTGAATTTTGTTTTTAAGGAATGCAATAAAAAGTAGCGT ]
[+] EMBL OSS11996A [ AAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGCAATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGA ]
[+] EMBL BE229721 [ GGATATG AATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTNCAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGACATATTGTNCATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGACGATGATGGGAATCAGGTTTGGGGAACCAAANCTGGCCCTTACGANTTCAAGCCTGCCCCCCAGTCGAATTACGACNACATGTTCTCGCCGTTGAATTTTTCTGCTCCCTTGACGCTGGAGAAGAANATTGANANCTCGTTCGCCATCNATGATCNGTANTATATTANTAT TTCATACAGTTCCATGTNCCNCTCTCTCTTTTTTTTTAATTTAAGAAAACTAANCCGAAAAAACTGCCTTCGTTTAGTATNTA CCCCGTGTTCTGAATTTTGTTGCTAAAAAATGCCATAAAAANTAc ]
[+] EMBL AU088673 [ TTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGACATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGACGATGATGGGAATCAGGTTTGGGGAACCAAAGCTGGCCCTTACGAGTTCAAGCCTGCCCCCAAGTCGAATTACGACGACATGTTCTCGCCGTTGAATTTTTCTGCTCCATTGACGCTGGAGAAGAAGATTGAGAGCTCGTTCGCAATCGATGATCAGTAGTATATTAGTATGTACATACAGTT CATGTACCTCTCTCTCTTTTTTTTTAATTTAAGAAAACTAAGCAGAAAAAACTGCCTTCGTTTAGTATATAGCCCCGTGTACTGAATTTTGTTGCTAAGAAATGCAATAAAAAGTAGCGTTGCATGTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[GTAANCCCAAGGCCCAAAGGNATATGGAAATGGGATGTTGNAGTGGAGTCATAACAATAGAGATGTTGAAAGAGTGACAAGAATTGTCTGGTGACCGTCAAAGGGATCAGAGCCCACTACCAGAAGAAGTCATTGCGGACATTTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAAGGATCAACCCCTCCTGAAGGCTTTCCCTACAGCTGGAGCGGTGCGTACATATTGTACATCGGATTTGTCCATTCACAAGATATGTGAGGTGCATATCCTGGGGACAAGGGTTTTGACGATGATGGGAATACAGGTTTGGGGAACCATAAAGCTGGCCCTTACGAGTTCAAGCCTGGCCCCCAAGTCGGAATTACGACGACATGGTTCTCGCCCGTTGAATTGTTTGCGGCTCCATTGACGNCTGGAGAAGAAGATTGGAGAGNTCGTTGCGCAATGCGAGGATNCAGTAGTATATTAGTAGGTACATGACAAGTGTGCATGGGACCTGCTGCTGCTCTGTTGTTTGTNGAATTTAAGAAAACTAANCAGAAAAAACTGGCCTTCGTTTAGTATATACCCCCGTGGTACNGAATTTGGTTGCTAAGAAATCCATATAAAAAGTAGCGTTGCATGGTATAAAAA]
[+] EMBL BM419465 [GTAANCCCAAGGCCCAAAGGNATATGGAAATGGGATGTTGNAGTGGAGTCATAACAATAGAGATGTTGAAAGAGTGACAAGAATTGTCTGGTGACCGTCAAAGGGATCAGAGCCCACTACCAGAAGAAGTCATTGCGGACATTTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAAGGATCAACCCCTCCTGAAGGCTTTCCCTACAGCTGGAGCGGTGCGTACATATTGTACATCGGATTTGTCCATTCACAAGATATGTGAGGTGCATATCCTGGGGACAAGGGTTTTGACGATGATGGGAATACAGGTTTGGGGAACCATAAAGCTGGCCCTTACGAGTTCAAGCCTGGCCCCCAAGTCGGAATTACGACGACATGGTTCTCGCCCGTTGAATTGTTTGCGGCTCCATTGACGNCTGGAGAAGAAGATTGGAGAGNTCGTTGCGCAATGCGAGGATNCAGTAGTATATTAGTAGGTACATGACAAGTGTGCATGGGACCTGCTGCTGCTCTGTTGTTTGTNGAATTTAAGAAAACTAANCAGAAAAAACTGGCCTTCGTTTAGTATATACCCCCGTGGTACNGAATTTGGTTGCTAAGAAATCCATATAAAAAGTAGCGTTGCATGGTATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11371#0 CCTCTCCCCCTCTTCCGCCCCAACCTCCAACCTCACCTCGTCGTCGCCACGGCCTCCCTC 60
consensus_11371#1 ------------------------------------------------------------
consensus_11371#0 GCGAGTTCGCCGTGGAACACCCGATGGGCTCCGGCGAGGACACCGGCGCGGGCGTCGCGG 120
consensus_11371#1 ------------------------------------------------------------
consensus_11371#0 GAGGAGGGGGAGGCGGAGGCGCCGGTGGGGTGGTGCGGGGCGCGGTGCTGAAGGCGCTCG 180
consensus_11371#1 ------------------------------------------------------------
consensus_11371#0 TGGTCGTCGGCGGCGTGCTGCTGCTCCGGCGGCTGCGCCGCTCCACCACCCGGTGGGACC 240
consensus_11371#1 ------------------------------------------------------------
consensus_11371#0 ACGCCCGCGCCGTCGTGGACGCGCTCTCCGGTGAGAAGTTCTCGAGGGAGCAGGCGAGGA 300
consensus_11371#1 ------------------------------------------------------------
consensus_11371#0 AGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGG 360
consensus_11371#1 ------------------------------------------------------------
consensus_11371#0 ATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCC 420
consensus_11371#1 ------------------------------------------------------------
consensus_11371#0 GACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATAT---GAAATGTGATGTTGAGT 477
consensus_11371#1 -----------------GTAANCCCAAGGCCCAAAGGNATATGGAAATGGGATGTTGNAG 43
**** *** * ** ** * ** ****** *******
consensus_11371#0 TGAGTTCATATGCAATTAGAGATGTTGAA-GAGT-ACAAGAATT-TCTG-TGACCGTCCA 533
consensus_11371#1 TGGAGTCATA-ACAAT-AGAGATGTTGAAAGAGTGACAAGAATTGTCTGGTGACCGTCAA 101
** ***** **** ************ **** ********* **** ******** *
consensus_11371#0 AAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATT-GCAGAGCACCTGACTAC 592
consensus_11371#1 AGGGATCAGAGCCCACTACCAGAAGAAGTCATTGCGGACATTTGCAGAGCACCTGACTAC 161
* ********* **** ************************* *****************
consensus_11371#0 CATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAA-GGATCAACCCCTC 651
consensus_11371#1 CATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAAGGATCAACCCCTC 221
********************************************** *************
consensus_11371#0 CTGAAGGCTTTCCCAACAGCTGGAGCGGTGCG-ACATATTGTACATCGGATTTGTCCATT 710
consensus_11371#1 CTGAAGGCTTTCCCTACAGCTGGAGCGGTGCGTACATATTGTACATCGGATTTGTCCATT 281
************** ***************** ***************************
consensus_11371#0 CACAAGAATGGTGAGGTGCATATCT--GGGACAAGGGTTTTGACGATGATGGGAAT-CAG 767
consensus_11371#1 CACAAGATATGTGAGGTGCATATCCTGGGGACAAGGGTTTTGACGATGATGGGAATACAG 341
******* ************** ***************************** ***
consensus_11371#0 GTTTGGGGAACCA--AAGCTGGCCCTTACGAGTTCAAGCCTG-CCCCCAAGTCG-AATTA 823
consensus_11371#1 GTTTGGGGAACCATAAAGCTGGCCCTTACGAGTTCAAGCCTGGCCCCCAAGTCGGAATTA 401
************* *************************** *********** *****
consensus_11371#0 CGACGACATG-TTCTCGCC-GTTGAATTTTT--CTGCTCCATTGACGC-TGGAGAAGAAG 878
consensus_11371#1 CGACGACATGGTTCTCGCCCGTTGAATTGTTTGCGGCTCCATTGACGNCTGGAGAAGAAG 461
********** ******** ******** ** * ************ ***********
consensus_11371#0 ATTG-AGAGCTCGTT-CGCAAT-CGATGATC-AGTAGTATATTAGTATGTACAT-ACA-- 931
consensus_11371#1 ATTGGAGAGNTCGTTGCGCAATGCGAGGATNCAGTAGTATATTAGTAGGTACATGACAAG 521
**** **** ***** ****** *** *** *************** ****** ***
consensus_11371#0 -GTTCATG-----TACCTCT-CTCTCTTTTTTTTT-AATTTAAGAAAACTAAGCAGAAAA 983
consensus_11371#1 TGTGCATGGGACCTGCTGCTGCTCTGTTGTTTGTNGAATTTAAGAAAACTAANCAGAAAA 581
** **** * * ** **** ** *** * **************** *******
consensus_11371#0 AACTG-CCTTCGTTTAGTATATAGCCCCGTG-TACTGAATTTTGTTGCTAAGAAATGCA- 1040
consensus_11371#1 AACTGGCCTTCGTTTAGTATATACCCCCGTGGTACNGAATTTGGTTGCTAAGAAATCCAT 641
***** ***************** ******* *** ****** ************* **
consensus_11371#0 ATAAAAAGTAGCGTTGCATGTAAAAAAAAAAAAAAAAAAAAAA 1083
consensus_11371#1 ATAAAAAGTAGCGTTGCATGGTATAAAAA-------------- 670
******************** * *****
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||