These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1345 fasta sequence [TTCTGCTTTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCGCAGCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCT----ACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCT-GGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGA-GAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCAGTAATTTCACGGGTTAAACCCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGAT-CCGTGTTTCAGCAACTA-TGTAAAAATA-CTGGAAAAGTCGAAACCAGTGA-TTG-TTGCAGGAGACCTTAACTGTG-CTCGTCAAAGCAT-TGACATTCACAATCCTCCAGCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAGACAAACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGTACTGAAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAAGCCAACTGTACATAATCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGGCCAAACTTTCAAAAACATTTTATCATGAA] [+] EMBL AU088619 [TTCTGCTTTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCGCANCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCTGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCTGGGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGGAGAGAATTTTGATGTGTTATGTCTTCAAGng ] [+] EMBL C28334 [TTCTGCTTTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCGCA NCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCTGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCT GGGNTATTAACGGGCTTCATGATGTTGTAACGACAAAGGGG TTTCTNCACGTGACTTTGCTCAGA GAGAGAA TTTGATGTGTTATGGCTTCAAG GGCACATTTGGgg ] [+] EMBL AK102132 [ TTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCGCAGCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCT ACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCT GGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGA GAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCAGTAATTTCACGGGTTAAACCCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGAT CCGTGTTTCAGCAACTA TGTAAAAATA CTGGAAAAGTCGAAACCAGTGA TTG TTGCAGGAGACCTTAACTGTG CTCGTCAAAGCAT TGACATTCACAATCCTCCAGCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAGACAAACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGTACTGAAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAAGCCAACTGTACATAATCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGGCCAAACTTTCATAGGCATTTTATCATGAA] [+] EMBL CF307333 [ TCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCGCAGCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCT ACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCT GGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGA GAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAANAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGA ] [+] EMBL AU092885 [ TGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGAT CCGTGTTTCAGCAACTA TGTAAAAATA CTGGAAAAGTCGAAACCAGTGA TTG TTGCAGGAGACCTTAACTGTG CTCGTCAAAGCAT TGACATTCACAATCCTCCAGCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAGACAAACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGTACTGAAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAAGCCAACTGTACATAATCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGGCCAAACTTTCAAAAA ] [+] EMBL BI807228 [ TAACTGGGATCCCGTGTTTCAGCAACTATTGT AAAATACCTGGAAAAGTCGAAACCAGTGATTTGTTTGCAGGAGACCTTAACTGTGCCTCGTCAA CATGTGACATTCACCATCCTCCA CCAAAACCAAGTCT CAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAGAC AACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACC ACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCC ATTGGCCTGGTACTGAAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAA CCAACTGTACATAATCCCTTGAC AATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGANGCCTTTGTTTcaaaa ] [+] EMBL C97677 [ GGAATCTATTACCGACAAGGTTCATGATNCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGTACTGAAGCTATAGTATCGGCGAGACTCTAAAANTCGAGACCTNACTGAAGCCAACTGTACATAANCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAANANTACGATTTGTTCTGTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGGCCAAACTTTCAAAAA ] consensusID : consensus_11378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence [CAAGGGGGGCTTTCCTCCCGATCACCCAGACGCATTCTGCTTTCGTCTCCAGAGGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCTGGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCTGTAATTTCACGGGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAAATACTGGGAAAAGTCGAAACCAGTGATTGGTGCAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTNCAGCAAAAACCAAGTCTGGCAGGTTTCACAATTGGAAGAGAGAGAGTCATTTGAGACAAACNTTTTC] [+] EMBL CA764589 [CAAGGGGGGCTTTCCTCCCGATCACCCAGACGCATTCTGCTTTCGTCTCCAGAGGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCTGGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCTGTAATTTCACGGGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAAATACTGGGAAAAGTCGAAACCAGTGATTGGTGCAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTNCAGCAAAAACCAAGTCTGGCAGGTTTCACAATTGGAAGAGAGAGAGTCATTTGAGACAAACNTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11378#0 TTCTGCTTTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCG 60 consensus_11378#1 ------------------------------------------------------------ consensus_11378#0 CAGCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCAC 120 consensus_11378#1 --------CAAGGGGGGCTTTCCTCCCGATCACCCAGACGCATTCTGCTTTCGTCTCCAG 52 ** * ** **** * ** ** ** * ** consensus_11378#0 CGGCT-ACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGA 179 consensus_11378#1 AGGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGA 112 *** ****************************************************** consensus_11378#0 GCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGA 239 consensus_11378#1 GCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGA 172 ************************************************************ consensus_11378#0 GAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGC 299 consensus_11378#1 GAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGC 232 ************************************************************ consensus_11378#0 CATGATACCAAGTGCATGAAGATTTTATCCTGGAATATTAACGGGCTTCATGATGTTGTA 359 consensus_11378#1 CATGATACCAAGTGCATGAAGATTTTATCCTGGAATATTAACGGGCTTCATGATGTTGTA 292 ************************************************************ consensus_11378#0 ACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGAGAGAATTTTGATGTGTTATGT 419 consensus_11378#1 ACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGAGAGAATTTTGATGTGTTATGT 352 ************************************************************ consensus_11378#0 CTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGAC 479 consensus_11378#1 CTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGAC 412 ************************************************************ consensus_11378#0 TATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCAGTAATT 539 consensus_11378#1 TATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCTGTAATT 472 ***************************************************** ****** consensus_11378#0 TCACGGGTTAAACCCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGA 599 consensus_11378#1 TCACGGGTTAAACC-AATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGA 531 ************** ********************************************* consensus_11378#0 GGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAA 659 consensus_11378#1 GGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAA 591 ************************************************************ consensus_11378#0 TTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGATCCGTGTTTCAG 719 consensus_11378#1 TTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGATCCGTGTTTCAG 651 ************************************************************ consensus_11378#0 CAACTATGTAAAAATACTGG-AAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACT 778 consensus_11378#1 CAACTATGTAAAAATACTGGGAAAAGTCGAAACCAGTGATTGGTGCAGGAGACCTTAACT 711 ******************** ********************* ***************** consensus_11378#0 GTGCTCGTCAAAGCATTGACATTCACAATCCTCCAGCAAAAACCAAGTCTG-CAGGTTTC 837 consensus_11378#1 GTGCTCGTCAAAGCATTGACATTCACAATCCTNCAGCAAAAACCAAGTCTGGCAGGTTTC 771 ******************************** ****************** ******** consensus_11378#0 ACAATTG-AAGAGAGAGAGTCATTTGAGACAAACTTTTCTAGCAAAGGCCTTGTGGATAC 896 consensus_11378#1 ACAATTGGAAGAGAGAGAGTCATTTGAGACAAACNTTTTC-------------------- 811 ******* ************************** *** consensus_11378#0 TTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCAT 956 consensus_11378#1 ------------------------------------------------------------ consensus_11378#0 AACCAACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGT 1016 consensus_11378#1 ------------------------------------------------------------ consensus_11378#0 TCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGT 1076 consensus_11378#1 ------------------------------------------------------------ consensus_11378#0 ACTGAAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAAGCCAACTGTAC 1136 consensus_11378#1 ------------------------------------------------------------ consensus_11378#0 ATAATCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTG 1196 consensus_11378#1 ------------------------------------------------------------ consensus_11378#0 GTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGT 1256 consensus_11378#1 ------------------------------------------------------------ consensus_11378#0 CAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGG 1316 consensus_11378#1 ------------------------------------------------------------ consensus_11378#0 CCAAACTTTCAAAAACATTTTATCATGAA 1345 consensus_11378#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||