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Oryza sativa
cluster # 11389 cluster # 11389       Sequences # 9       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11389#0 length = 810 sequences # 2  
consensus_11389#1 length = 796 sequences # 2  
consensus_11389#2 length = 564 sequences # 3  
consensus_11389#3 length = 384 sequences # 1  
consensus_11389#4 length = 358 sequences # 1  

consensusID : consensus_11389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 810
fasta sequence
                              [CTCCCCAGCGGCACGCTATCTCTCTCTCCCAGCGACGGNANCGCGCCATCCACTCCCTCCCTCCCAGATCCNACTGGATGAGGGGAGGGCAGCGGNGTGGAGGCGGNGCTCCCNTCCCCTTCCTTTCTCCCCGCTCCTGGATCAGGCTGTAGGAGGGGAGCNATGGTGGAGGCCGNCACCGCAGGCAACGGAGGTGGCACTCCTCCCTCCCTAGCTCCAAGATCCGGCTGGAGGAGGGAGCAATAGTGGCGGAGGCGGCGCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCAGATCTGGCCGGAGGGGGAGGGCGGCATCGGCCCCAGCGACGGCGGCGCGCTTTCTCCACTCTCCAACTCCTCGGCGAGTAGCAGGTGCGACGGTCTCACCATGGACGAGCAGCGGGAGCGGCGGCGTCCTCGTCCTCCGGCGAGTAGCGGGAGCGGTAGCGTCCTCGTCCTCAGCTAGCAATAGGAGTGATGCCATCCAGTGGCGTCGGAGCAGCGGGAGCGGTGGAGTCTTCGTCCTCGACGAGCAAGGAGCAGCGAGAGCGGCGATGGCCTCGGCCTCGGGCCCGGCGGCAGTGGCGGCGTCCCCGACGAGCAGTGGCCTCGACCTCTAGCGAGCTCAGCATTCTGTTAGTATTTGCGGTGATTGATTTCATTGATGTAGACATCGTTCTTTGATTTTGATTTTGTTTTTTTTCTCGTCAACTTTTTTTTTTCTGGAACCGAGTCGGACCCAACGAACTATGCATACGGTTTGCACAAATCGCTCAGGACATGGAAATATATGACTAACAAAAATTT]

[+] EMBL C29050               [CTCCCCAGCGGCACGCTATCTCTCTCTCCCAGCGACGGNANCGCGCCATCCACTCCCTCCCTCCCAGATCCNACTGGATGAGGGGAGGGCAGCGGNGTGGAGGCGGNGCTCCCNTCCCCTTCCTTTCTCCCCGCTCCTGGATCAGGCTGTAGGAGGGGAGCNATGGTGGAGGCCGNCACCGCAGGCAACGGAGGTGGCACTCCTCCCTCCCTAGCTCCAAGATCCGGCTGGAGGAGGGAGCAATAGTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK068287             [              gcctTCTCTCTCTCCCAGCGACGGCAGCGCGCCATCCACTCCCTCCCTCCCAGATCCGACTGGATGAGGGGAGGGCAGCGGCGTGGAGGCGGCGCTCCCCTCCCCTTCCTTTCTCCCCGCTCCTGGATCAGGCTGTAGGAGGGGAGCGATGGTGGAGGCCGCCACCGCAGGCGACGGAGGTGGCACTCCTCCCTCCCTAGCTCCAAGATCCGGCTGGAGGAGGGAGCAATAGTGGCGGAGGCGGCGCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCAGATCTGGCCGGAGGGGGAGGGCGGCATCGGCCCCAGCGACGGCGGCGCGCTTTCTCCACTCTCCAACTCCTCGGCGAGTAGCAGGTGCGACGGTCTCACCATGGACGAGCAGCGGGAGCGGCGGCGTCCTCGTCCTCCGGCGAGTAGCGGGAGCGGTAGCGTCCTCGTCCTCAGCTAGCAATAGGAGTGATGCCATCCAGTGGCGTCGGAGCAGCGGGAGCGGTGGAGTCTTCGTCCTCGACGAGCAAGGAGCAGCGAGAGCGGCGATGGCCTCGGCCTCGGGCCCGGCGGCAGTGGCGGCGTCCCCGACGAGCAGTGGCCTCGACCTCTAGCGAGCTCAGCATTCTGTTAGTATTTGCGGTGATTGATTTCATTGATGTAGACATCGTTCTTTGATTTTGATTTTGTTTTTTTTCTCGTCAACTTTTTTTTTTCTGGAACCGAGTCGGACCCAACGAACTATGCATACGGTTTGCACAAATCGCTCAGGACATGGAAATATATGACTAACAAAAATTT]


>consensus_11389#0 CTCCCCAGCGGCACGCTATCTCTCTCTCCCAGCGACGGNANCGCGCCATCCACTCCCTCC CTCCCAGATCCNACTGGATGAGGGGAGGGCAGCGGNGTGGAGGCGGNGCTCCCNTCCCCT TCCTTTCTCCCCGCTCCTGGATCAGGCTGTAGGAGGGGAGCNATGGTGGAGGCCGNCACC GCAGGCAACGGAGGTGGCACTCCTCCCTCCCTAGCTCCAAGATCCGGCTGGAGGAGGGAG CAATAGTGGCGGAGGCGGCGCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCAGATCTGGCC GGAGGGGGAGGGCGGCATCGGCCCCAGCGACGGCGGCGCGCTTTCTCCACTCTCCAACTC CTCGGCGAGTAGCAGGTGCGACGGTCTCACCATGGACGAGCAGCGGGAGCGGCGGCGTCC TCGTCCTCCGGCGAGTAGCGGGAGCGGTAGCGTCCTCGTCCTCAGCTAGCAATAGGAGTG ATGCCATCCAGTGGCGTCGGAGCAGCGGGAGCGGTGGAGTCTTCGTCCTCGACGAGCAAG GAGCAGCGAGAGCGGCGATGGCCTCGGCCTCGGGCCCGGCGGCAGTGGCGGCGTCCCCGA CGAGCAGTGGCCTCGACCTCTAGCGAGCTCAGCATTCTGTTAGTATTTGCGGTGATTGAT TTCATTGATGTAGACATCGTTCTTTGATTTTGATTTTGTTTTTTTTCTCGTCAACTTTTT TTTTTCTGGAACCGAGTCGGACCCAACGAACTATGCATACGGTTTGCACAAATCGCTCAG GACATGGAAATATATGACTAACAAAAATTT



consensusID : consensus_11389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 796
fasta sequence
                              [CTCGTCGCTCTCTCCGTCTCCCCGTCTCTCCGCCACTCGCGGCTTTCCCACAACCAGCGACGGCGGCGCGCCATCCGACCGGATGAGGGGAGGGCGGCAGCGGTTGCCACGGCAGGCGGCGGCGTGAAGGCGGCTCTCCCCTCCCCTTCCTTTCTCCCCGCTCCTGGATCAGGCCACAGGAGGGGAGCGATGGTGGAGGCGGCCACCGTAGGCGGCGGAGGTGGCGTTCCTCCTCCCTAGCTCCCAGACCCGGCTGGAGGAGGGAGTGATGGTGGCGGAGGCGGCGCTCCCTCCTCTCCCTCCCTCCCTCCCTCACAGATCTGGCCGGAGGGAGGGAGGGCCGCGGCCCCAGCGGCGGCGGCGTCGGCCCCAGCGATGGCGGCGTGTCTTCTCCACTCTCCGACTCGCCACTCCCAGGGCAGCGGTGGCTCCCTCCGCCATCTCTCTTCTCCCTCCGGCGGCGGTGGTGGCGTCGGCGGTGGCGGCGGCGGTGGCGTTGGCGGCGGCCGCGGATGGATGGTGTCGGCGGCGGCCACAGATGGATGACGTGGTGGCGACCGCGGATGGATGGCGTGGCGACGACCGAGGGCGGCGGTGGCAACGGCCGAGGGCCGCGGTGGCGATGGCCAATGGCGGATCCGGCGGAAGGCGAGAAAAGTTTTGTGATGTAGGTTTGTTGTTTTTTGATGATTACTTTGTGATTTTGTGATGATTGTGGTTGATGTTTTTTGGTGGGGGGGGGAGTGATTTGGTTGTGCCGATTTTGGGAAGATTTTGTGATGATTGTGGTTGATTT]

[+] EMBL AK070380             [CTCGTCGCTCTCTCCGTCTCCCCGTCTCTCCGCCACTCGCGGCTTTCCCACAACCAGCGACGGCGGCGCGCCATCCGACCGGATGAGGGGAGGGCGGCAGCGGTTGCCACGGCAGGCGGCGGCGTGAAGGCGGCTCTCCCCTCCCCTTCCTTTCTCCCCGCTCCTGGATCAGGCCACAGGAGGGGAGCGATGGTGGAGGCGGCCACCGTAGGCGGCGGAGGTGGCGTTCCTCCTCCCTAGCTCCCAGACCCGGCTGGAGGAGGGAGTGATGGTGGCGGAGGCGGCGCTCCCTCCTCTCCCTCCCTCCCTCCCTCACAGATCTGGCCGGAGGGAGGGAGGGCCGCGGCCCCAGCGGCGGCGGCGTCGGCCCCAGCGATGGCGGCGTGTCTTCTCCACTCTCCGACTCGCCACTCCCAGGGCAGCGGTGGCTCCCTCCGCCATCTCTCTTCTCCCTCCGGCGGCGGTGGTGGCGTCGGCGGTGGCGGCGGCGGTGGCGTTGGCGGCGGCCGCGGATGGATGGTGTCGGCGGCGGCCACAGATGGATGACGTGGTGGCGACCGCGGATGGATGGCGTGGCGACGACCGAGGGCGGCGGTGGCAACGGCCGAGGGCCGCGGTGGCGATGGCCAATGGCGGATCCGGCGGAAGGCGAGAAAAGTTTTGTGATGTAGGTTTGTTGTTTTTTGATGATTACTTTGTGATTTTGTGATGATTGTGGTTGATGTTTTTTGGTGGGGGGGGGAGTGATTTGGTTGTGCCGATTTTGGGAAGATTTTGTGATGATTGTGGTTGATTT]
[+] EMBL AK066322             [                                 CACTCGCGGCTTTCCCACAACCAGCGACGGCGGCGCGCCATCCGACCGGATGAGGGGAGGGCGGCAGCGGTTGCCACGGCAGGCGGCGGCGTGAAGGCGGCTCTCCCCTCCCCTTCCTTTCTCCCCGCTCCTGGATCAGGCCACAGGAGGGGAGCGATGGTGGAGGCGGCCACCGTAGGCGGCGGAGGTGGCGTTCCTCCTCCCTAGCTCCCAGACCCGGCTGGAGGAGGGAGTGATGGTGGCGGAGGCGGCGCTCCCTCCTCTCCCTCCCTCCCTCCCTCACAGATCTGGCCGGAGGGAGGGAGGGCCGCGGCCCCAGCGGCGGCGGCGTCGGCCCCAGCGATGGCGGCGTGTCTTCTCCACTCTCCGACTCGCCACTCCCAGGGCAGCGGTGGCTCCCTCCGCCATCTCTCTTCTCCCTCCGGCGGCGGTGGTGGCGTCGGCGGTGGCGGCGGCGGTGGCGTTGGCGGCGGCCGCGGATGGATGGTGTCGGCGGCGGCCACAGATGGATGACGTGGTGGCGACCGCGGATGGATGGCGTGGCGACGACCGAGGGCGGCGGTGGCAACGGCCGAGGGCCGCGGTGGCGATGGCCAATGGCGGATCCGGCGGAAGGCGAGAAAAGTTTTGTGATGTAGGTTTGTTGTTTTTTGATGATTACTTTGTGATTTTGTGATGATTGTGGTTGATGTTTTTTGGTGGGGGGGGGAGTGATTTGGTTGTGC                                      ]


>consensus_11389#1 CTCGTCGCTCTCTCCGTCTCCCCGTCTCTCCGCCACTCGCGGCTTTCCCACAACCAGCGA CGGCGGCGCGCCATCCGACCGGATGAGGGGAGGGCGGCAGCGGTTGCCACGGCAGGCGGC GGCGTGAAGGCGGCTCTCCCCTCCCCTTCCTTTCTCCCCGCTCCTGGATCAGGCCACAGG AGGGGAGCGATGGTGGAGGCGGCCACCGTAGGCGGCGGAGGTGGCGTTCCTCCTCCCTAG CTCCCAGACCCGGCTGGAGGAGGGAGTGATGGTGGCGGAGGCGGCGCTCCCTCCTCTCCC TCCCTCCCTCCCTCACAGATCTGGCCGGAGGGAGGGAGGGCCGCGGCCCCAGCGGCGGCG GCGTCGGCCCCAGCGATGGCGGCGTGTCTTCTCCACTCTCCGACTCGCCACTCCCAGGGC AGCGGTGGCTCCCTCCGCCATCTCTCTTCTCCCTCCGGCGGCGGTGGTGGCGTCGGCGGT GGCGGCGGCGGTGGCGTTGGCGGCGGCCGCGGATGGATGGTGTCGGCGGCGGCCACAGAT GGATGACGTGGTGGCGACCGCGGATGGATGGCGTGGCGACGACCGAGGGCGGCGGTGGCA ACGGCCGAGGGCCGCGGTGGCGATGGCCAATGGCGGATCCGGCGGAAGGCGAGAAAAGTT TTGTGATGTAGGTTTGTTGTTTTTTGATGATTACTTTGTGATTTTGTGATGATTGTGGTT GATGTTTTTTGGTGGGGGGGGGAGTGATTTGGTTGTGCCGATTTTGGGAAGATTTTGTGA TGATTGTGGTTGATTT



consensusID : consensus_11389#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 564
fasta sequence
                              [CAGATCTGGCCGAAGGGGGAGGGCAGCATCGGCTCTAGCGACGGTGGCGCGCCTTCTCCACTCTCCGACTCCTCGGCGAGCAGCAGGTGCGACGATCTTACCATGGATGAGCAGCGGGAGCGGCGGTGCCCTCGCCCTCAACTAGCAACAGGAGTGACCCCGTCCAGTGGCATTGGGGCAGCGGGAGCGACGTCCTCTCCCTTGACAAGCAGCGGGAGCGGCAGCATCCACGTCCTTAGCTAGCAACAGGAGTGACGCTGTCCAGTGGCGTCGGAGCAGCGGGAACAGTATCGTCTTCGTCCTCGACGAGCAAGGAGGAGCGGGAGCGGCGATAGACTCGGCCTCAGGCCCAGCGGCAGTGGCGGTGTCCCCGACGAGCAGTGGCCTCGACATCTGGCGAGCTCAGCATTCTGTTAGTATTTAATTTGTTGTGATTTCATTGATGTAGACATTGTTCTTTGATTAGTCTTTTTTGCTCGTCAACTTTTTTTTCTGGAACCGAGTTGGCCCCAATGAACTATGGGGACTAACAAAAATTTGTTTGGAAGCAAAAAAAAAAAAAGG]

[-] EMBL CB647227             [CAGATCTGGCCGAAGGGGGAGGGCAGCATCGGCTCTAGCGACGGTGGCGCGCCTTCTCCACTCTCCGACTCCTCGGCGAGCAGCAGGTGCGACGATCTTACCATGGATGAGCAGCGGGAGCGGCGGTGCCCTCGCCCTCAACTAGCAACAGGAGTGACCCCGTCCAGTGGCATTGGGGCAGCGGGAGCGACGTCCTCTCCCTTGACAAGCAGCGGGAGCGGCAGCATCCACGTCCTTAGCTAGCAACAGGAGTGACGCTGTCCAGTGGCGTCGGAGCAGCGGGAACAGTATCGTCTTCGTCCTCGACGAGCAAGGAGGAGCGGGAGCGGCGATAGACTCGGCCTCAGGCCCAGCGGCAGTGGCGGTGTCCCCGACGAGCAGTGGCCTCGACATCTGGCGAGCTCAGCATTCTGTTAGTATTTAATTTGTTGTGATTTCATTGATGTAGACATTGTTCTTTGATTAGTCTTTTTTGCTCGTCAACTTTTTTTTCTGGAACCGAGTTGGCCCCAATGAACTATGGGGACTAACAAAAATTTGTTTGGAAGCAAAAAAAAAAAAAGG]
[+] EMBL AU172787             [                                                                                                                                     ggCCTCAACTAGCAACAGGAGTGACACCGTCCAGTGGCATTGGGGCAGCGGGAGCGACGTCCTCTACCTTGACAAGCAGCGGGAGCGGCAGCATCCACGTCCTTAGCTAGCAACAGGAGTGACGCTGTCCAGTGGCGTCGGAGCAGCGGGAACAGTATCGTCTTCGTCCTCGACGAGCAAGGAGGAGCGGGAGCGGCGATAGACTCGGCCTCAGGCCCAGCGGCAGTGGCGGTGTCCCCGACGAGCAGTGGCCTCGACATCTGGCGAGCTCAGCATTCTGTTAGTATTTAATTTGTTGTGATTTCATTGATGTAGACATTGTTCTTTGATTAGTCTTTTTTGCTCGTCAACTTTTTTTTCTGGAACCGAGTTGGACCCAATGAACTATATGGACTAACAAAAATTTGTTTGGAAGCAAAAAAAAA      ]
[-] EMBL CF329883             [                                                                                                                                                                                                                                                                                                                                                                         GCGGTGTCCCCGACGAGCAGTGGCCTCGACATTTGGCGAGCTCAGCATTCTGTTAGTATTTAATTTGTTGTGATTTCATTGATGTAGACATTGTCCTTTGATAAGTCTTTTTTGCTCGTCAAaaaaaaaaa                                                                        ]


>consensus_11389#2 CAGATCTGGCCGAAGGGGGAGGGCAGCATCGGCTCTAGCGACGGTGGCGCGCCTTCTCCA CTCTCCGACTCCTCGGCGAGCAGCAGGTGCGACGATCTTACCATGGATGAGCAGCGGGAG CGGCGGTGCCCTCGCCCTCAACTAGCAACAGGAGTGACCCCGTCCAGTGGCATTGGGGCA GCGGGAGCGACGTCCTCTCCCTTGACAAGCAGCGGGAGCGGCAGCATCCACGTCCTTAGC TAGCAACAGGAGTGACGCTGTCCAGTGGCGTCGGAGCAGCGGGAACAGTATCGTCTTCGT CCTCGACGAGCAAGGAGGAGCGGGAGCGGCGATAGACTCGGCCTCAGGCCCAGCGGCAGT GGCGGTGTCCCCGACGAGCAGTGGCCTCGACATCTGGCGAGCTCAGCATTCTGTTAGTAT TTAATTTGTTGTGATTTCATTGATGTAGACATTGTTCTTTGATTAGTCTTTTTTGCTCGT CAACTTTTTTTTCTGGAACCGAGTTGGCCCCAATGAACTATGGGGACTAACAAAAATTTG TTTGGAAGCAAAAAAAAAAAAAGG



consensusID : consensus_11389#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence
                              [CGACGGTGGCCTCGGCCTCAACTAGCAACAGGAGTTACACCGTCCAGTGGCATTGGGGCAGCGGGAGCAACGTCCTCTACCTTGACAAGCAGCGGGAGCGACAGCATCCACGTCCTTAGCTAGCAACAGGAGTNACGCTGTNCAGTGGCGTAGGAGCAGCGGGAACAGTATCGTCTTCGTCCTCGACGAGCAAGGAGGAGCNGGACGNCGATAGANTCGGCCTCAGGCCCAGCGGCAGTTGCGGTGTCCCCGACGAGCAGTGGGCCTCGACATCTGGCGAACTCAGCATTCTGGTTAGTATTNTAATTTGTTGTNATTCCATTGAATGTANGACATTGTTCCTTTGATTAAGTCCTTTTTTGCTCGTNAAACTTTTTTTTCTTG]

[+] EMBL C74333               [CGACGGTGGCCTCGGCCTCAACTAGCAACAGGAGTTACACCGTCCAGTGGCATTGGGGCAGCGGGAGCAACGTCCTCTACCTTGACAAGCAGCGGGAGCGACAGCATCCACGTCCTTAGCTAGCAACAGGAGTNACGCTGTNCAGTGGCGTAGGAGCAGCGGGAACAGTATCGTCTTCGTCCTCGACGAGCAAGGAGGAGCNGGACGNCGATAGANTCGGCCTCAGGCCCAGCGGCAGTTGCGGTGTCCCCGACGAGCAGTGGGCCTCGACATCTGGCGAACTCAGCATTCTGGTTAGTATTNTAATTTGTTGTNATTCCATTGAATGTANGACATTGTTCCTTTGATTAAGTCCTTTTTTGCTCGTNAAACTTTTTTTTCTTG]


>consensus_11389#3 CGACGGTGGCCTCGGCCTCAACTAGCAACAGGAGTTACACCGTCCAGTGGCATTGGGGCA GCGGGAGCAACGTCCTCTACCTTGACAAGCAGCGGGAGCGACAGCATCCACGTCCTTAGC TAGCAACAGGAGTNACGCTGTNCAGTGGCGTAGGAGCAGCGGGAACAGTATCGTCTTCGT CCTCGACGAGCAAGGAGGAGCNGGACGNCGATAGANTCGGCCTCAGGCCCAGCGGCAGTT GCGGTGTCCCCGACGAGCAGTGGGCCTCGACATCTGGCGAACTCAGCATTCTGGTTAGTA TTNTAATTTGTTGTNATTCCATTGAATGTANGACATTGTTCCTTTGATTAAGTCCTTTTT TGCTCGTNAAACTTTTTTTTCTTG



consensusID : consensus_11389#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence
                              [GACTGGACTGAAGGAGTAGAAACTCGAACTTTATCTCCTTCTGTAGAATCCTCCGCCTCCGCTTCTCTCTCTCGTCGCTCTCTCCGTCTTTACCGTCTCTCCTTCGCCACTCCCCAGCGGCGGCGCGCCTTCTCCCTCTCCCAGCGACGGCAGCGCGCCATCCACTCCCTTCCTCCCAGATCCGACTGATGAGAGGAGGGCAGCGGCGTGGAGGCGGCGCTCCCCTCCCCTTACTTTCTCCCCGCTCCTGGATCAGGCTGTAGGAGGGGAGCGATGGTGGGGGCAGCCACCGCATGCGACGGAGGTGGCGCTCCTCCCTCCCTAGCTCCCAAATCCGGCTGGAGGAGGGAGCGATAGT]

[+] EMBL CF339418             [GACTGGACTGAAGGAGTAGAAACTCGAACTTTATCTCCTTCTGTAGAATCCTCCGCCTCCGCTTCTCTCTCTCGTCGCTCTCTCCGTCTTTACCGTCTCTCCTTCGCCACTCCCCAGCGGCGGCGCGCCTTCTCCCTCTCCCAGCGACGGCAGCGCGCCATCCACTCCCTTCCTCCCAGATCCGACTGATGAGAGGAGGGCAGCGGCGTGGAGGCGGCGCTCCCCTCCCCTTACTTTCTCCCCGCTCCTGGATCAGGCTGTAGGAGGGGAGCGATGGTGGGGGCAGCCACCGCATGCGACGGAGGTGGCGCTCCTCCCTCCCTAGCTCCCAAATCCGGCTGGAGGAGGGAGCGATAGT]


>consensus_11389#4 GACTGGACTGAAGGAGTAGAAACTCGAACTTTATCTCCTTCTGTAGAATCCTCCGCCTCC GCTTCTCTCTCTCGTCGCTCTCTCCGTCTTTACCGTCTCTCCTTCGCCACTCCCCAGCGG CGGCGCGCCTTCTCCCTCTCCCAGCGACGGCAGCGCGCCATCCACTCCCTTCCTCCCAGA TCCGACTGATGAGAGGAGGGCAGCGGCGTGGAGGCGGCGCTCCCCTCCCCTTACTTTCTC CCCGCTCCTGGATCAGGCTGTAGGAGGGGAGCGATGGTGGGGGCAGCCACCGCATGCGAC GGAGGTGGCGCTCCTCCCTCCCTAGCTCCCAAATCCGGCTGGAGGAGGGAGCGATAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11389#1      ------------------------------------------------------------
consensus_11389#4      -GACTGGACTGAAGGAGTAGAAACTCGAACTTTATCTCCTTCTGTAGAATCCTCCGCCTC 59
consensus_11389#0      ------------------------------------------------------------
consensus_11389#2      CAGATCTGGCCGAAGGGGGAGGGCAGCATCGGCTCTAGCGACGGTGGCGCGCCTTCTCCA 60
consensus_11389#3      ------------------------------------------------------------
                                                                                   

consensus_11389#1      -----------CTCGTCGCTCTCTCCGTCTCC-CCGTCTCTCC---GCCACTC------- 38
consensus_11389#4      CGCTTCTCTCTCTCGTCGCTCTCTCCGTCTTTACCGTCTCTCCTTCGCCACTCCCCAGCG 119
consensus_11389#0      --------------------------------------------------CTCCCCA--- 7
consensus_11389#2      CTCTCCGACTCCTCGGCGAGCAGCAGGTGCGA-CGATCTTACCATGGATGAGCAGCGGGA 119
consensus_11389#3      ------------------------------------------------------------
                                                                                   

consensus_11389#1      GCGGC-------TTTCCCACAACCAGCGACGGCGGC-GCGCCATCCGACCGGATGAGGGG 90
consensus_11389#4      GCGGCG-CGCCTTCTCCCTCTCCCAGCGACGGCAGC-GCGCCATCCACTCCCTTCCTCCC 177
consensus_11389#0      GCGGCA-CGCTATCTCTCTCTCCCAGCGACGGNANC-GCGCCATCCACTCCCTCCCTCCC 65
consensus_11389#2      GCGGCGGTGCCCTCGCCCTCAACTAGCAACAGGAGTGACCCCGTCCAGTGGCATTGGGGC 179
consensus_11389#3      -CGACGGTGGCCTCGGCCTCAACTAGCAACAGGAGTTACACCGTCCAGTGGCATTGGGGC 59
                        ** *       *    * *  * *** ** *      * ** ***              

consensus_11389#1      AG----GGCGGCAGCGGTTGCCACGGCAGGCGGCGGC-GTGAAGGCGGCTCTCCCCTCCC 145
consensus_11389#4      AG----ATC--CGACTGATGAGA-GGAGGGCAGCGGC-GTGGAGGCGGCGCTCCCCTCCC 229
consensus_11389#0      AG----ATCC-NACTGGATGAGG-GGAGGGCAGCGGN-GTGGAGGCGGNGCTCCCNTCCC 118
consensus_11389#2      AGCGGGAGCGACGTCCTCTCCCTTGACAAGCAGCGGGAGCGGCAGCATCCACGTCCTTAG 239
consensus_11389#3      AGCGGGAGCAACGTCCTCTACCTTGACAAGCAGCGGGAGCGACAGCATCCACGTCCTTAG 119
                       **      *         *     *    ** ****  * *   **        * *   

consensus_11389#1      CTTCCTTTCTCCCCGCTCCTGGATCAGGCCACAGGAGGGGAGCGATGGTGGAGGCGGCCA 205
consensus_11389#4      CTTACTTTCTCCCCGCTCCTGGATCAGGCTGTAGGAGGGGAGCGATGGTGGGGGCAGCCA 289
consensus_11389#0      CTTCCTTTCTCCCCGCTCCTGGATCAGGCTGTAGGAGGGGAGCNATGGTGGAGGCCGNCA 178
consensus_11389#2      CTAGCAACAGGAGTGACGCTGTCCAGTGGCGTCGGAGCAGCGGGAACAGTATCGTCTTCG 299
consensus_11389#3      CTAGCAACAGGAGTNACGCTGTNCAGTGGCGTAGGAGCAGCGGGAACAGTATCGTCTTCG 179
                       **  *             ***      *     ****  * *  *        *    * 

consensus_11389#1      CCGTAGGCGGCGGAGGTGGCGTTCCTCC-TCCCTAGCTCCCAGACCCGGCTGGAGGAGGG 264
consensus_11389#4      CCGCATGCGACGGAGGTGGCGCTCCTCCCTCCCTAGCTCCCAAATCCGGCTGGAGGAGGG 349
consensus_11389#0      CCGCAGGCAACGGAGGTGGCACTCCTCCCTCCCTAGCTCCAAGATCCGGCTGGAGGAGGG 238
consensus_11389#2      TCCTCGACGAGCAAGGAGGAGCGGGAGCGGCGATAGACTCGGCCTCAGGCCC--AGCGGC 357
consensus_11389#3      TCCTCGACGAGCAAGGAGGAGCNGGA-CGNCGATAGANTCGGCCTCAGGCCC--AGCGGC 236
                        *     *     *** **        *  *  ***   *     * ***     * ** 

consensus_11389#1      AGTGATGGTGGCGGAGGCGGCGCTCCCTCCTCTCCCTCCCTCCCTCCCTCACAGATCTGG 324
consensus_11389#4      AGCGATAGT--------------------------------------------------- 358
consensus_11389#0      AGCAATAGTGGCGGAGGCGGCGCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCAGATCTGG 298
consensus_11389#2      AGTGGCGGTGTCCCCGACGAGCAGTGG-CCTCGACATC--TGGCGAGCTCAGCATTCTG- 413
consensus_11389#3      AGTTGCGGTGTCCCCGACGAGCAGTGGGCCTCGACATC--TGGCGAACTCAGCATTCTGG 294
                       **     **                                                   

consensus_11389#1      CCGGAGGGAGGGAG-GGCCGCGGCCCCAGCGGCGGCGGCG---TCGGCCCCAGCGATGGC 380
consensus_11389#4      ------------------------------------------------------------
consensus_11389#0      CCGGAGGGGGAGGGCGGCATCGGCCCCAGCGACGGCGGCGCGCTTTCTCCACTCTCCAAC 358
consensus_11389#2      TTAGTATTT--AATTTGTTGTGATTTCATTGA-TGTAG-A--CATTGTTC-TTTGATTAG 466
consensus_11389#3      TTAGTATTNT-AATTTGTTGTNATTCCATTGAATGTANGA--CATTGTTCCTTTGATTAA 351
                                                                                   

consensus_11389#1      GGCGTGTCTTCTCCACTCTCCGACTCGCCACTCCCAGGGCAGCGGTGGCTCCCTC--CGC 438
consensus_11389#4      ------------------------------------------------------------
consensus_11389#0      TCCTCGGCGAGTAGCAGGTGCGACGGTCTCACCATGGACGAGCAGCGGGAGCGGCGGCGT 418
consensus_11389#2      ------TCTTTTTTGCTCGTCAA-CTTTTTTTTCTGGAACCGAGTTGGCCCCAATGAACT 519
consensus_11389#3      GT----CCTTTTTTGCTCGTNAAACTTTTTTTTCTTG----------------------- 384
                                                                                   

consensus_11389#1      CATCTCTCTTCTCCCTCCGGCGGCGGTGGTGGCGTCGGCGG-------TGGCGGCGGCGG 491
consensus_11389#4      ------------------------------------------------------------
consensus_11389#0      CCTCGTCCTCCGGCGAGTAGCGGGAGCGGTAGCGTCCTCGTCCTCAGCTAGCAATAGGAG 478
consensus_11389#2      ATGGGGACTAACAAAAATTTGTTTGGAAGCAAAAAAAAAAAAAGG--------------- 564
consensus_11389#3      ------------------------------------------------------------
                                                                                   

consensus_11389#1      TGGCGTTGGC-GGCGGCCGCGGATGGATGGTGTCGGCGGCGGCCACAGATGGATGACGTG 550
consensus_11389#4      ------------------------------------------------------------
consensus_11389#0      TGATGCCATCCAGTGGCGTCGGAGCAGCGGGAGCGGTGGAGTCTTCGTCCTCGACGAGCA 538
consensus_11389#2      ------------------------------------------------------------
consensus_11389#3      ------------------------------------------------------------
                                                                                   

consensus_11389#1      GTGGCGACCGCGGATGGATGGCGTGGCGACGACCGAG--GGCGGCGGTGGCAACGGCCGA 608
consensus_11389#4      ------------------------------------------------------------
consensus_11389#0      AGGAGCAGCGAGAGCGGCGATGGCCTCGGCCTCGGGCCCGGCGGCAGTGGCGGCGTCCCC 598
consensus_11389#2      ------------------------------------------------------------
consensus_11389#3      ------------------------------------------------------------
                                                                                   

consensus_11389#1      GGGCCGCGGTGGCGATGGCCAATGGCGGATCCGGCGGAAGGCGAGAAAAGTTTTGTGATG 668
consensus_11389#4      ------------------------------------------------------------
consensus_11389#0      GACGAGCAGTGGCCTCGACCTCTAGCGAGCTCAGCATTCTGTTAGTATT-TGCGGTGATT 657
consensus_11389#2      ------------------------------------------------------------
consensus_11389#3      ------------------------------------------------------------
                                                                                   

consensus_11389#1      TAGGTTTGTTGTTTTTTGATGATTACTTTGTGATTTTGTGATGATTGTGGTTGATGTTTT 728
consensus_11389#4      ------------------------------------------------------------
consensus_11389#0      GATTTCATTGATGTAGACATCGTTCTTTGATTTTGATTTTGTTTTTTTTCTCGTCAACTT 717
consensus_11389#2      ------------------------------------------------------------
consensus_11389#3      ------------------------------------------------------------
                                                                                   

consensus_11389#1      TTGGTGGGGGGGGGAGTGATTTGGTTGTGCCGATTTTGGGAAGATTTTGTGATGATTGTG 788
consensus_11389#4      ------------------------------------------------------------
consensus_11389#0      TTTTTTTTCTGGAACCGAGTCGGACCCAACGAACTATGCATACGGTTTGCACAAATCGCT 777
consensus_11389#2      ------------------------------------------------------------
consensus_11389#3      ------------------------------------------------------------
                                                                                   

consensus_11389#1      GTTGATTT------------------------- 796
consensus_11389#4      ---------------------------------
consensus_11389#0      CAGGACATGGAAATATATGACTAACAAAAATTT 810
consensus_11389#2      ---------------------------------
consensus_11389#3      ---------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)