These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 959 fasta sequence [ACCGGGAAGTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAGGACATTAAAGCACTTTTCCCTTCTGATTACAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCCTTGTCCATGATATGT-TCCCTCCAACCACTCTTGTTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTT--GATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGT-TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA-AGTTGTATCAGCAGCTGCTAGTC-AGCAATTTTTCTCTTTGTGTTCTTGT-AGCTGCAGCTCCTCTATGATT-AGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAAC-TGTC-AAAACACGCTGTATGTTGTACAAG-AGA-AAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAAC-TGGTAAAAGTTTCATGTGCTCG-CATCTGATATTTTG-GA-GGAATGATTACTTTATTNGTGTTCCNNNNANATNANTTNNCTNTTTNNNTTNNNNNNTTTTACTTAAGGGGGGGGCCGGAACCAAATTGCCCTATAAGAGTGG] [+] EMBL BE040099 [ACCGGGAAGTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAGGACATTAAAGCACTTTTCCCTTCTGATTACAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCCTTGTCCATGATATGT TCCCTCCAACCACTCTTGTTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTT GATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGT TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTCTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA AGTTGTATCAGCAGCTGCTAGTC AGCAAATTTTCTCTTTGGGTTCTTGT AGCTGCAGCTTCTCTATGATTAAGAATACT CTTGTTCATGGAAGCAACAAGCAACCCCAAACTTGTC AAACACGCTGTATGTTGTACAAGAAGA AAAACATTG ACATTTTCTAACCCATTTTCACCTTCT CTTGTGCTG ATGTAACAATCAATGCCTG AACTTGGT AAAG TTCATGGGCTCG CATCTGATATTTTG GA TGAATGATTACTTTATTNGTGTTCCNNNNANATNANTTNNCTNTTTNNNTTNNNNNNTTTTACTTAAGGGGGGGGCCGGAACCAAATTGCCCTATAAGAGTGG] [+] EMBL CB097127 [ AGGACATTAAAGCACTTTTCCCTTCTGATTACAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCGTCAACCCAAAGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCCTTGTCCATGATATGT TCCCTCCAACCACTTTTGTTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTT GATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGCAAAGCATCTCAGGAGT TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA AGTTGTATCAGCAGCTGCTAGTC AGCAATTTTTCTCTTTGTGTTCTTGT AGCTGCAGCTCCTCTATGATT AGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAAC TGTC AAAACACGCTGTATGTTGTACAAG AGA AAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGGGCTGNATGTAACATTCAATGCCTGT ] [-] EMBL CB676531 [ ACTTTTCCCTTCTGATTACAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCCTTGTCCATGATATGT TCCCTCCAACCACTCTTGTTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTT GATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGT TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA AGTTGTATCAGCAGCTGCTAGTC AGCAATTTTTCTCTTTGTGTTCTTGT AGCTGCAGCTCCTCTATGATT AGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAAC TGTC AAAACACGCTGTATGTTGTACAAG AGA AAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAAC TGGTAAAAGTTTCATGTGCTCG t ] [-] EMBL CB651347 [ CAAGGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCCTTGTCCATGATATGT TCCCTCCAACCACTCTTGTTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTT GATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGT TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA AGTTGTATCAGCAGCTGCTAGTC AGCAATTTTTCTCTTTGTGTTCTTGT AGCTGCAGCTCCTCTATGATT AGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAAC TGTC AAAACACGCTGTATGTTGTACAAG AGA AAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAAC TGGTAAAAGTTTCATGTGCTCGTCATCTGATATTTTGAGAGGGAATGAatt ] [+] EMBL BM421892 [ gCCATGATATGTNTCCCTCCAACCACTCTT TTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTTGNGATCTGTAGTGTAGTTCTAAC AACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGT TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCACAGTTGTATCAGCAGCTGCTAGTC AGCAATTTTTCTCTTTGTGTTCTTGT AGCTGCAGCTCCTCTATGATT AGATTACTCCTGGTTCATGGAAGCAACAGGCAACCC AAAC TGTC AAAACACGCTGTATGTTGTACAAG AGACCNAACTTTGTACATTTCCTACCCCA ] [+] EMBL BI810777 [ atGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGTGTTCCATATTTATGGTTTGGATCTCCAACGCAAAGGTT CCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA AGTTGTATCAGCAGCTGCTAGTCAAGCAATTTTTCTCTTTGTGTTCTTGTGAGCTGCAGCTCCTCTATGATT AGATTACTCCTGGTTCATGGAAGCAACAGGCAAACCCAAAC TGTCAAAAACACGCTGTATGTTGTACAAG AGA AAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAAC TGGTAAAAGTTTCATGTGCTCGTCATCTGATATTTTG GAaaaaa ] consensusID : consensus_11427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 407 fasta sequence [CCGACGCCAAAGGTTNCCATTTTATTTGCTTTGACGAAGCTCTCANGATCATACATCTTTTAGGGAGTGATCTGNGATACTCTTCGTCGAACTTACGCCCTTAGCTNGTCAGCTTTCCAAGTTGTATCAGCAGCTGCTAGTCANCAATTTTTCTCTTNGTGTTCTTGTAGCTGCAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTGGTCAAAACACGCTGTATGTTGTACAAGAGAAAAACTGTGTACATTTCCTGACCCCATTGTTGCACCTTCTCCTTGGTGCTGTANGTAACATTCAA-NCCTGTAACGGGTAAAAGTTTCATGTGCTCGTCATCTGGATATTTTGGACGGAATGAATTACTCTATAGCTGATCAAAAA] [+] EMBL BQ909189 [CCGACGCCAAAGGTTNCCATTTTATTTGCTTTGACGAAGCTCTCANGATCATACATCTTTTAGGGAGTGATCTGNGATACTCTTCGTCGAACTTACGCCCTTAGCTNGTCAGCTTTCCAAGTTGTATCAGCAGCTGCTAGTCANCAATTTTTCTCTTNGTGTTCTTGTAGCTGCAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTGGTCAAAACACGCTGTATGTTGTACAAGAGAAAAACTGTGTACATTTCCTGACCCCATTGTTGCACCTTCTCCTTGGTGCTGTANGTAACATTCAA NCCTGTAACGGGTAAAAGTTTCATGTGCTCGTCATCTGGATATTTTGGACGGAATGAATTACTCTATAGCTGATCAAAAA] [+] EMBL BQ909011 [CCGACG CAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCAAGTTGTATCAGCAGCTGCTAGTCAGCAATTTTTCTCTTTGTGTTCTTGTAGCTGCAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCC AAACT GTCAAAACACGCTGTATGTTGTACAAGAGAAAAACATTGTACATTTCCT ACCCCATT TT CACCTTCTCCTT GTGCTGTATGTAACATTCAATGCCTGTAACTGGTAAAAGTTTCATGTGCTCGTCATCT GATATTTTGGATGGAATGAATTACTCTATAGCTGATCAAAAA] consensusID : consensus_11427#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [GCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCAAGTTGTATCAGCAGCTGCTAGTCAGCAATTTTTCTCTTTGTGTTCTTGTAGCTGCAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTGTCAAAACACGCTGTATGTTGTACAAGAGAAAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAACTGGTAAAAGTTTCATGTGCTCGTCATCTGATATTTTGGATGGAAAAAAAAAAAAA] [-] EMBL CF279634 [GCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCAAGTTGTATCAGCAGCTGCTAGTCAGCAATTTTTCTCTTTGTGTTCTTGTAGCTGCAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTGTCAAAACACGCTGTATGTTGTACAAGAGAAAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAACTGGTAAAAGTTTCATGTGCTCGTCATCTGATATTTTGGATGGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11427#0 ACCGGGAAGTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAGGACATTA 60 consensus_11427#2 ------------------------------------------------------------ consensus_11427#1 ------------------------------------------------------------ consensus_11427#0 AAGCACTTTTCCCTTCTGATTACAATCCATTTTATGCTGGATTTGGCAACAGAGATACAG 120 consensus_11427#2 ------------------------------------------------------------ consensus_11427#1 ------------------------------------------------------------ consensus_11427#0 ATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAA 180 consensus_11427#2 ------------------------------------------------------------ consensus_11427#1 ------------------------------------------------------------ consensus_11427#0 AGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCC 240 consensus_11427#2 ------------------------------------------------------------ consensus_11427#1 ------------------------------------------------------------ consensus_11427#0 TTGTCCATGATATGTTCCCTCCAACCACTCTTGTTGAGCAGGAAGACTACAATTCCTGGA 300 consensus_11427#2 ------------------------------------------------------------ consensus_11427#1 ------------------------------------------------------------ consensus_11427#0 ATTACTGGAAGATGCCATTGCCAGATGTTGATCTGTAGTGTAGTTCTAACAAACACAGAA 360 consensus_11427#2 ------------------------------------------------------------ consensus_11427#1 ------------------------------------------------------------ consensus_11427#0 GTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAA 420 consensus_11427#2 ------------------------------------------------------------ consensus_11427#1 ------------------------------------------------------------ consensus_11427#0 CGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGTTTCCATATTTATGGTT 480 consensus_11427#2 ------------------------------------------------------------ consensus_11427#1 ------------------------------------------------------------ consensus_11427#0 TTGATCTCCAACGC-AAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATA 539 consensus_11427#2 ----------------------GCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATA 38 consensus_11427#1 -------CCGACGCCAAAGGTTNCCATTTTATTTGCTTTGACGAAGCTCTCANGATCATA 53 ***************************** ******* consensus_11427#0 CATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGC 599 consensus_11427#2 CATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGC 98 consensus_11427#1 CATCTTTTAGGGAGTGATCTGNGATACTCTTCGTCGAACTTACGCCCTTAGCTNGTCAGC 113 ********************* ********************** ******** ****** consensus_11427#0 TTTCCAAGTTGTATCAGCAGCTGCTAGTCAGCAATTTTTCTCTTTGTGTTCTTGTAGCTG 659 consensus_11427#2 TTTCCAAGTTGTATCAGCAGCTGCTAGTCAGCAATTTTTCTCTTTGTGTTCTTGTAGCTG 158 consensus_11427#1 TTTCCAAGTTGTATCAGCAGCTGCTAGTCANCAATTTTTCTCTTNGTGTTCTTGTAGCTG 173 ****************************** ************* *************** consensus_11427#0 CAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTG- 718 consensus_11427#2 CAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTG- 217 consensus_11427#1 CAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTGG 233 *********************************************************** consensus_11427#0 TCAAAACACGCTGTATGTTGTACAAGAGAAAAACATTGTACATTTCCT-ACCCCATTTT- 776 consensus_11427#2 TCAAAACACGCTGTATGTTGTACAAGAGAAAAACATTGTACATTTCCT-ACCCCATTTT- 275 consensus_11427#1 TCAAAACACGCTGTATGTTGTACAAGAGAAAAACTGTGTACATTTCCTGACCCCATTGTT 293 ********************************** ************ ******** * consensus_11427#0 -CACCTTCTCCTTG-TGCTGTATGTAACATTCAATGCCTGTAACTGGTAAAAGTTTCATG 834 consensus_11427#2 -CACCTTCTCCTTG-TGCTGTATGTAACATTCAATGCCTGTAACTGGTAAAAGTTTCATG 333 consensus_11427#1 GCACCTTCTCCTTGGTGCTGTANGTAACATTCAAN-CCTGTAACGGGTAAAAGTTTCATG 352 ************* ******* *********** ******** *************** consensus_11427#0 TGCTCG-CATCTG-ATATTTTGGA-GGAATGA-TTACTTTATTNGTGTTCCNNNNANATN 890 consensus_11427#2 TGCTCGTCATCTG-ATATTTTGGA-TGGAAAA-AAAAAAAAA------------------ 372 consensus_11427#1 TGCTCGTCATCTGGATATTTTGGACGGAATGAATTACTCTATAGCTGATCAAAAA----- 407 ****** ****** ********** * * * * * consensus_11427#0 ANTTNNCTNTTTNNNTTNNNNNNTTTTACTTAAGGGGGGGGCCGGAACCAAATTGCCCTA 950 consensus_11427#2 ------------------------------------------------------------ consensus_11427#1 ------------------------------------------------------------ consensus_11427#0 TAAGAGTGG 959 consensus_11427#2 --------- consensus_11427#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||