Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1143 cluster # 1143       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1143#0 length = 612 sequences # 1  
consensus_1143#1 length = 342 sequences # 1  

consensusID : consensus_1143#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence
                              [TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATGGCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAAGAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTCATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACATGTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTTTTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAAAAAAAAAAAAAA]

[+] EMBL CA754470             [TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATGGCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAAGAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTCATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACATGTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTTTTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAAAAAAAAAAAAAA]


>consensus_1143#0 TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCG CCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCC AGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCC ATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTG CCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATG GCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAA GAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTC ATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACAT GTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTT TTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAA AAAAAAAAAAAA



consensusID : consensus_1143#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence
                              [TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTNGTCCCCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC]

[+] EMBL OS1682A              [TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTNGTCCCCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC]


>consensus_1143#1 TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTT GTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCC CTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTG ACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTG CCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTNGTCC CCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1143#0      TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCG 60
consensus_1143#1      ----TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCG 56
                          ********************************************************

consensus_1143#0      CCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCC 120
consensus_1143#1      CCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCC 116
                      ************************************************************

consensus_1143#0      AGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCC 180
consensus_1143#1      AGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCC 176
                      ************************************************************

consensus_1143#0      ATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTG 240
consensus_1143#1      ATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTG 236
                      ************************************************************

consensus_1143#0      CCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATG 300
consensus_1143#1      CCTGCCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTN 296
                      **************************** ******************** ** * ** * 

consensus_1143#0      GCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAA 360
consensus_1143#1      GT------CCCCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC-------- 342
                      *           *****   * **  *  *  *** * *     ***   *         

consensus_1143#0      GAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTC 420
consensus_1143#1      ------------------------------------------------------------
                                                                                  

consensus_1143#0      ATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACAT 480
consensus_1143#1      ------------------------------------------------------------
                                                                                  

consensus_1143#0      GTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTT 540
consensus_1143#1      ------------------------------------------------------------
                                                                                  

consensus_1143#0      TTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAA 600
consensus_1143#1      ------------------------------------------------------------
                                                                                  

consensus_1143#0      AAAAAAAAAAAA 612
consensus_1143#1      ------------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)