These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATGGCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAAGAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTCATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACATGTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTTTTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAAAAAAAAAAAAAA] [+] EMBL CA754470 [TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATGGCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAAGAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTCATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACATGTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTTTTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAAAAAAAAAAAAAA] consensusID : consensus_1143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTNGTCCCCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC] [+] EMBL OS1682A [TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTNGTCCCCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1143#0 TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCG 60 consensus_1143#1 ----TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCG 56 ******************************************************** consensus_1143#0 CCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCC 120 consensus_1143#1 CCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCC 116 ************************************************************ consensus_1143#0 AGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCC 180 consensus_1143#1 AGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCC 176 ************************************************************ consensus_1143#0 ATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTG 240 consensus_1143#1 ATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTG 236 ************************************************************ consensus_1143#0 CCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATG 300 consensus_1143#1 CCTGCCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTN 296 **************************** ******************** ** * ** * consensus_1143#0 GCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAA 360 consensus_1143#1 GT------CCCCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC-------- 342 * ***** * ** * * *** * * *** * consensus_1143#0 GAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTC 420 consensus_1143#1 ------------------------------------------------------------ consensus_1143#0 ATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACAT 480 consensus_1143#1 ------------------------------------------------------------ consensus_1143#0 GTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTT 540 consensus_1143#1 ------------------------------------------------------------ consensus_1143#0 TTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAA 600 consensus_1143#1 ------------------------------------------------------------ consensus_1143#0 AAAAAAAAAAAA 612 consensus_1143#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||