These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1168 fasta sequence [NNNNTAATTAAAATGACTTTTATTTATATATAAGCAGCTTTCTTAACGTAAGACACAAG-TACA--CCA-TGA--TT-AT-AAT-AAG-TGG-TC-AAACAT-TTAT-ATAT-AGT-CCATT-ATTCTTTATTC-ACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGGGTACGAGCGACACTGGGTGATCCTGTTCGGGGCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCCTCCACCTCGTCGTGGAGCACCGCGCGGAGCTGCTGCTCGAACTCAGCCACCTTGGCCAGCTGGTTGTCACCGTTGGCCAGCGCATGGTCCATGAGCACCGCGCGGAGCTTCTGTATGAGTGGCAAGCTGGATCTGCATGGGTCTTCTGCGTACGTGAACACCGCCACGCGGTCGATAGCAGCGCCGAGCAGCGCTAGCAGATCGTCATCGTCCATGGCCAGGGATTTCTTGGCGACATTTGTCACGCACTTGTTAACAGCGGCCTTGATGCTCTCCTCGAGTTGGCGCAGGTCGACGGCCTGGCACAGTGCGATAAGGAAAGTAGAGGACATGAGCTTCAGGATGGTGACGGCCTCTGCTGTCATCCTGGAGGAGATGAGGCCGAGAGAGTTGACGCTCTGGTTGTGCTGCTCCGCGGTCTGCACATGGTTGGTCACCGGGTTGGCGAGGAACTGCAGCTCAGAGCAGTAGGACGCCATGGCGACCTCGGCGCCATTGAAACCGTAGTCCAAGCTCGGGTTGCGCCCGCCGGACAGATCGGAGGGAAGGCCGTTGCTGTAGAAGCTACTGGCAAGCTCGGAGATCTGCGAGAACATGAGCCTGCCGATGGCAGCGATGGCGAGAAGAGTGTTGTCCATGGACACCCAGATGGGAGTGCCCTGGAAGTTGCCGCCGTGGAGCGCC] [-] EMBL AU162838 [NNNNTAATTAAAATGACTTTTATTTATATATAAGCAGCTTTCTTAACGTAAGACACAAG TACA CCA TGA TT AT AAT AAG TGG TC AAACAT TTAT ATAT AGT CCATT ATTCTTTATTC ACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCA ] [+] EMBL CB638491 [ TTAAAATGACTTTTATTTATATATAAGCAGCTTTCTTAACGTAAGACACAAG TACA CCA TGA TT AT AAT AAG TGG TC AAACAT TTAT ATAT AGT CCATT ATTCTTTATTC ACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGGGTACGAGCGACACTGGGTGATCCTGTTCGGGGCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCCTCCACCTTGTTGTGGAGCACCGCG ] [+] EMBL CB675503 [ TAAAATGACTTTTATTTATATATAAGCAGCTTTCTTAACGTAAGACACAAG TACA CCA TGA TT AT AAT AAG TGG TC AAACAT TTAT ATAT AGT CCATT ATTCTTTATTC ACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGGGTACGAGCGACACTGGGTGATCCTGTTCGGGGCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCCTCCACCTCGTCGTGGAGCACCGCGCGGAGCTGCTGCTCGAACTCAGCCACCTTGGCCAGCTGGTTGTCACCGTTGGCCAGCGCATGGTCCATGAGCACCGCGCGGAGCTTCTGTATGAGTGGCAAGCTGGATCTGCATGGGTCTTCTGCGTACGTGAACACCGCCACGCGGTCGATAGCAGCGCCGAGCAGCGCTAGCAGATCGTCATCGTCCATGGCCAGGGATTTCTTGGCGACATTTGTCACGCACTTGTTAACAGCGGCCTTGATGCTCTCCTCGAGTTGGCGCAGGTCGACGGCCTGGCACAG ] [-] EMBL OSS11679A [ aaggaccacCAAGTTACAACCCATTGAATTTAATAAATAAAG TGGNNCAAAACATNTTATAATATAAGTCCCATTAATTCTTTATTCAACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCG ] [+] EMBL CB654910 [ AT AAGTTGG TC AAACAT TTAT ATAT AGT CCATT ATTCTTTATTC ACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATACTACTTGTGCTTTAAATAATTTTTCATCCGTCAAAGGTACCCCTCGACTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCACTGAGGCACTCCACCACCGGGATGATGTGCTTGCGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGAACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGGGTACGAGCGACACTGGGTGATCCTGTTCGGGGCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCCTCCACCTCGTCGTGGAGCACCGCGCGGAGCTGCTGCTCGAACTCATCCACCTTGGCCAGCT ] [-] EMBL CF326479 [ ACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGGGTACGAGCGACACTGGGTGATCCTGTTCGGGGCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCCTCCACCTCGTCGTGGAGCACCGCGCGGAGCTGCTGCTCGAACTCAGCCACCTTGGCCAGCTGGTTGTCACCGTTGGCCAGCGCATGGTCCATGAGCACCGCGCGGAGCTTCTGTATGAGTGGCAAGCTGGATCTGCATGGGTCTTCTGCGTACGTGAACACCGCCACGCGGTCGATAGCAGCGCCGAGCAGCGCTAGCAGATCGTCATCGTCCATGGCCAGGGATTTCTTGGCGACATTTGTCACGCACTTGTTAACAGCGGCCTTGATGCTCTCCTCGAGTTGGCGCAGGTCGACGGCCTGGCACAGTGCGATAAGGAAAGTAGAGGACATGAGCTTCAGGATGGTGACGGCCTCTGCTGTCATCCTGGAGGAGATGAGGCCGAGAGAGTTGACGCTCTGGTTGTGCTGCTCCGCGGTCTGCACATGGTTGGTCACCGGGTTGGCGAGGA ] [-] EMBL CF324656 [ TCGATAGCAGCGCCGAGCAGCGCTAGCAGATCGTCATCGTCCATGGCCAGGGATTTCTTGGCGACATTTGTCACGCACTTGTTAACAGCGGCCTTGATGCTCTCCTCGAGTTGGCGCAGGTCGACGGCCTGGCACAGTGCGATGAGGAAAGTAGAGGACATGAGCTTCAGGATGGTGACGGCCTCTGCTGTCATCCTGGAGGAGATGAGGCCGAGAGAGTTGACGCTCTGGTTGTGCTGCTCCGCGGTCTGCACATGGTTGGTCAAAGGGTTGGCGAGGAACTGCAGCTCAGAGCAGTAGGACGCCATGGCGACCTCGGCGCCATTGAAACCGTAGTCCAAGCTCGGGTTGC ] [-] EMBL CB675502 [ GCGGTCTGCACATGGTTGGTCACCGGGTTGGCGAGGAACTGCAGCTCAGAGCAGTAGGACGCCATGGCGACCTCGGCGCCATTGAAACTGTAGTCCAAGCTCGGGTTGCGCCCGCCGGACAGATCGGAGGGAAGGCCGTTGCTGTAGAAGCTACTGGCAAGCTCGGAGATCTGCGAGAACATGAGCCTGCCGATGGCAGCGATGGCGAGAAGAGTGTTGTCCATGGACACCCAGATGGGAGTGCCCTGGAAGTTGCCGCCGTGGAGCGCC] consensusID : consensus_11440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [TTCTTTATTCACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAACTCCTTGCGCACGAACTGTTACAGCGGGTACGAACGACACTGGGTTGATCCTGTTTCGGGGCCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCTCCACTCGTCTTGGAACACCCCCGGAACTGCTGCTCAAATCCNCCCCTTGGCACTTGTTNTCCCNTTGGCCACNCNTGGCCCTNAACCCCCCGGACTNCTNTTAAATTGGNACCGATTTNCNGGTTTNCCCTTNTTNAANCCCCCNGGNCAAAANNCCCAAANCNACAATNCTCTCCAGGCGGATNTGGAATTTCCCTNTTAAAGNTNACCCCAATTGCNGTTAGGCNGC] [+] EMBL BE229087 [TTCTTTATTCACTTACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTTAAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTTGAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTTGATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAACTCCTTGCGCACGAACTGTTACAGCGGGTACGAACGACACTGGGTTGATCCTGTTTCGGGGCCCGTGCCGCTCTCCACAGCCGCGCGTGCGGCTCCACTCGTCTTGGAACACCCCCGGAACTGCTGCTCAAATCCNCCCCTTGGCACTTGTTNTCCCNTTGGCCACNCNTGGCCCTNAACCCCCCGGACTNCTNTTAAATTGGNACCGATTTNCNGGTTTNCCCTTNTTNAANCCCCCNGGNCAAAANNCCCAAANCNACAATNCTCTCCAGGCGGATNTGGAATTTCCCTNTTAAAGNTNACCCCAATTGCNGTTAGGCNGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11440#0 NNNNTAATTAAAATGACTTTTATTTATATATAAGCAGCTTTCTTAACGTAAGACACAAGT 60 consensus_11440#1 ------------------------------------------------------------ consensus_11440#0 ACACCATGATTATAATAAGTGGTCAAACATTTATATATAGTCCATTATTCTTTATTCACT 120 consensus_11440#1 -----------------------------------------------TTCTTTATTCACT 13 ************* consensus_11440#0 TACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTT 180 consensus_11440#1 TACGCCCCGGCCCGCCGCGTGAATTATTGGGTATATATAGTAGGATAGTACTTTTGCTTT 73 ************************************************************ consensus_11440#0 AAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTT 240 consensus_11440#1 AAATAATTTTTCATCCGTCAGACGTACACCTCGTCTTCTCTTATTTGTACGTACGTAGTT 133 ************************************************************ consensus_11440#0 GAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTT 300 consensus_11440#1 GAGCTAATTAAGTGGCAGGGGCGCGCCTTTCCACTCGCTGAGGCACTCCAGCAGTGGGTT 193 ************************************************************ consensus_11440#0 GATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCG 360 consensus_11440#1 GATGTGCTTGTGCTGGTTCATGGCGATCACCACCTTGTCCACCTCCTCCCCGGGCGACCG 253 ************************************************************ consensus_11440#0 CGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAGCTCCTTGCGCACGAACCTGTACAGCGG 420 consensus_11440#1 CGTCTTCTCGCCGGTCAGGTACTCGGCGCCGAACTCCTTGCGCACGAACTGTTACAGCGG 313 ******************************** **************** ******** consensus_11440#0 GTACGAGCGACACTGGGT-GATCCTGTTCGGGG--CCGTGCCGCTCTCCACAGCCGCGCG 477 consensus_11440#1 GTACGAACGACACTGGGTTGATCCTGTTTCGGGGCCCGTGCCGCTCTCCACAGCCGCGCG 373 ****** *********** ********* *** ************************* consensus_11440#0 TGCGGCCTCCACCTCGTCGTGGAGCACCGCGCGGAGCTGCTGCTCGAACTCAGCCACCTT 537 consensus_11440#1 TGCGGC-TCCAC-TCGTCTTGGAACACC-CCCGGAACTGCTGCTCAAATCCNCC--CCTT 428 ****** ***** ***** **** **** * **** ********* ** * * **** consensus_11440#0 GGCCAGCTGGTTGTCACCGTTGGCCAGCGCATGGTCCATGAGCACCGCGCGGAGCTTCTG 597 consensus_11440#1 GGC--ACTTGTTNTC-CCNTTGGCCA-CNCNTGGCCCTNAA---CCCCCCGGA-CTNCTN 480 *** ** *** ** ** ******* * * *** ** * ** * **** ** ** consensus_11440#0 TATGAGTGGCAAGCTGGATCTGCATGGGTCTTCTGCGTACGTGAACACCGCCACGCGGTC 657 consensus_11440#1 TTAAATTGGNA---CCGATTTNCNGGTTTNCCCTTNTTNAANCCCCCNGGNCAAAANNCC 537 * * *** * *** * * * * ** * * * ** * consensus_11440#0 GATAGCAGCGCCGAGCAGCGCTAGCAGATCGTCATCGTCCATGGCCAGGGATTTCTTGGC 717 consensus_11440#1 CAAANCNACAATN--CTCTCCAGGCGGATNTGGAATTTCCCTNTTAAAGNTNACCCCAAT 595 * * * * * * ** *** * *** * * * * consensus_11440#0 GACATTTGTCACGCACTTGTTAACAGCGGCCTTGATGCTCTCCTCGAGTTGGCGCAGGTC 777 consensus_11440#1 TGCNGTTAGGCNGC---------------------------------------------- 609 * ** ** consensus_11440#0 GACGGCCTGGCACAGTGCGATAAGGAAAGTAGAGGACATGAGCTTCAGGATGGTGACGGC 837 consensus_11440#1 ------------------------------------------------------------ consensus_11440#0 CTCTGCTGTCATCCTGGAGGAGATGAGGCCGAGAGAGTTGACGCTCTGGTTGTGCTGCTC 897 consensus_11440#1 ------------------------------------------------------------ consensus_11440#0 CGCGGTCTGCACATGGTTGGTCACCGGGTTGGCGAGGAACTGCAGCTCAGAGCAGTAGGA 957 consensus_11440#1 ------------------------------------------------------------ consensus_11440#0 CGCCATGGCGACCTCGGCGCCATTGAAACCGTAGTCCAAGCTCGGGTTGCGCCCGCCGGA 1017 consensus_11440#1 ------------------------------------------------------------ consensus_11440#0 CAGATCGGAGGGAAGGCCGTTGCTGTAGAAGCTACTGGCAAGCTCGGAGATCTGCGAGAA 1077 consensus_11440#1 ------------------------------------------------------------ consensus_11440#0 CATGAGCCTGCCGATGGCAGCGATGGCGAGAAGAGTGTTGTCCATGGACACCCAGATGGG 1137 consensus_11440#1 ------------------------------------------------------------ consensus_11440#0 AGTGCCCTGGAAGTTGCCGCCGTGGAGCGCC 1168 consensus_11440#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||