These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2057 fasta sequence [GCGGCGCTGTTGCTG-GCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGGGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAAAAGAGGAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTTCCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCTGACCCGTCGCGCGCCAGCAGCGGTTGCGACGGCGTCGGCGGCGTGGTTGTGTAGATAGATTGGTTTGGTTTGGTTGCCGGGGAAGAGAGAGAGAGAAGAGAGAGGGGATGGCGAGGTTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCT-TCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGGATTATGGCGAGGAGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACCCGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTGTGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAGACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACTATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCTGCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACAATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTA-AACTGTAAATTACATTATTCATTTGACTATGTGAGGAGCATTGCATAAAAAAAAGACTGATTCCTGGGAGTGAGTGAAGTTCAAGCTAACAGTTTGGCCCTGAAAAAAAAAAGA] [+] EMBL AK068553 [GCGGCGCTGTTGCTG GCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGGGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAAAAGAGGAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTTCCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCTGACCCGTCGCGCGCCAGCAGCGGTTGCGACGGCGTCGGCGGCGTGGTTGTGTAGATAGATTGGTTTGGTTTGGTTGCCGGGGAAGAGAGAGAGAGAAGAGAGAGGGGATGGCGAGGTTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCT TCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGGATTATGGCGAGGAGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACCCGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTGTGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAGACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACTATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCTGCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACAATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTA AACTGTAAATTACATTATTCATTTGACTATGTGAGG ] [+] EMBL CB631492 [ TGCTGCGCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGGGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAAAAGAGGAGGGCACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTTCCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCTGACCCGTCGCGCGCCAGCAGCGGTTGCGACGGCGTGGGCGGCGTGGTTGTGTATATAGATTGGTTTGGTTTGGTTGCCATGGAAGAGAGAGAGAGAACAGAGAGGGGATGGCGAGGTTCATCCTGAGCCTGCTGGAGCTCGGCGTCTGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCTGTCAGCACGGCCGTCGCGGCGGACATCTCTCAGGCGGCGGCGGTCTC ] [+] EMBL CB634067 [ GGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAAAAGAGGAGGGCACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTTCCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCTGACCCGTCGCGCGCCAGCAGCGGTTGCGACGGCGTCGGCGGCGTGGTTGTGTAGATAGATTGGTTTGGTTTGGTTGCCAGGGAAGAGAGAGAGAGAAGAGAGAGGGGATGGCGAGGTTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCT TCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTT ] [+] EMBL CB677592 [ AAAAAGAGGAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTTCCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCTGACCCGTCGCGCGCCAGCAGCGGTTGCGACGGCGTCGGCGGCGTGGTTGTGTAGATAGATTGGTTTGGTTTGGTTGCCGGGGAAGAGAGAGAGAGAAGAGAGAGGGGATGGCGAGGTTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCT TCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAG ] [-] EMBL CB631493 [ ACATTCCTTGGCTGAAGAATTACTACAATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAAAACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTGGAATGGAAGGGAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTA AACTGTAAGTTACATTATTCATGTGACTATGTGAGGAGCATT ] [-] EMBL CB677593 [ ATGAGGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTA AACTGTAAATTACATTATTCATTTGACTATGTGAGGAGCATTGCATAAAAAAAAGA ] [-] EMBL CB634068 [ GATTCTGCCTGATCTTACGATTCAAGGATCTCTAAAACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTGGAATGGAAGGGAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTAGAACTGTAAATTACATTATTCATGTGACTATGTGAGGAGCATTGCATACATACCTCTCTGATTCCTGGGAGTGAGTGAAGTTCAAGCTAACAGTTTGGCCCTGAAAAAAAAAAGA] consensusID : consensus_11480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1778 fasta sequence [TCTCTTCCTCCTCTTCTCTTCATTCTCTTCCTGTTCCTCTTCTTCCTCCTCCCATCTCTTCGTCTTCCTCCTCTGGATCCGCCCCCTCCCCTCTCCTCCCCACCTCTCAGACGGTCGGGCCACGGCGGCCAGGCGGCGCGGAGGCGGCCTCGCGCGGCGGCCTGGCGGCAGCGAATCTGGGAGGGGAGGCGGCTGGCTGTCCTCTTCTCTTCATTCTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCTTCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGGATTATGGCGAGGAGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACCCGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTGTGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAGACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACTATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCTGCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACAATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCTTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTAAACTGTAAATTACATTATTCATTTGACTATGTGAGG] [+] EMBL AK071584 [TCTCTTCCTCCTCTTCTCTTCATTCTCTTCCTGTTCCTCTTCTTCCTCCTCCCATCTCTTCGTCTTCCTCCTCTGGATCCGCCCCCTCCCCTCTCCTCCCCACCTCTCAGACGGTCGGGCCACGGCGGCCAGGCGGCGCGGAGGCGGCCTCGCGCGGCGGCCTGGCGGCAGCGAATCTGGGAGGGGAGGCGGCTGGCTGTCCTCTTCTCTTCATTCTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTCTACGTCTTCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGCCTGCTGCTGCGCCGCCCGGCGGCGCCGGGGCTCGTCAACGTCGCCGCGGCCGGGGAGGAGGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCTCGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGGCGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCATGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGGATTATGGCGAGGAGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACCCGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTGTGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAGACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACTATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCTGCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACAATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTGATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTACGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACTTCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCCTTGGAATTCACCCCATGCTCTTCCTCCGAGTCTTCCAAATGTGTATGTGGAGGCACCCTCAAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGGCTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGGTAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTGAGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGCTGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTGTACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGAAAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCGGCAACCATGTAGATGTAAACAACATTGTAAACTGTAAATTACATTATTCATTTGACTATGTGAGG] consensusID : consensus_11480#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 842 fasta sequence [CTGTTGCTGGCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGCGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAATAGAGGAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCATCACCGGTTCGTCGTCCCTGCGCCCTACTTGCTGCTGTGTCTCTTCGTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGGGGCGGAGGCGGCGCTGAACTGACCGATCGCGCGCCAGCAGGTGTTGTGACGGGATCTGAGGTATGGTAGTCTCGATAGGGTGGGGTGTGAGGCAGCGCGTGCGGAATGAATGTGAGAGTTGGGATCGGTGAGGGTGAGTAGTTGGTGGTGGGTTGGAGTATGTGGTGGAGCTGATCAGGTGGGGCGCATTGGTGTAGATTGGCGAGTGTGGTGATATGGGGAGGTGCGTGTGGCGAGGAGTATGTGGTTGCGATGCGGATTGAGGATCTGGAAGGGGTGAGAACGGGATTAAGGTGGGGATCTGAGGGTATTATCGTTGTAGAGGGGCTGGGCGAGGTGGTGTAGTACGGGATTATGTATGACGTGGAGGGAGGGCGAGCTCTTGTTCGGAGGAGAGTATGTGATGGAGATGGGTAATGGGGGCAGATGTGAGGTGTAGATGTGGTTGGCTGTGAGCTGACTAGTCGTGTGGAATGTAGTGAGAGTGCACTGGGTAGGGTGTGATTGTGAATAGAGAGGGGATGTGGGTAGTATAGTTGTAGTGTGTGTGGTATGATAGATTGGGGG] [+] EMBL AW155146 [CTGTTGCTGGCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGCGGTGAACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAATAGAGGAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCGCCAATCCGGAGGCGCCATCACCGGTTCGTCGTCCCTGCGCCCTACTTGCTGCTGTGTCTCTTCGTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGGGGCGGAGGCGGCGCTGAACTGACCGATCGCGCGCCAGCAGGTGTTGTGACGGGATCTGAGGTATGGTAGTCTCGATAGGGTGGGGTGTGAGGCAGCGCGTGCGGAATGAATGTGAGAGTTGGGATCGGTGAGGGTGAGTAGTTGGTGGTGGGTTGGAGTATGTGGTGGAGCTGATCAGGTGGGGCGCATTGGTGTAGATTGGCGAGTGTGGTGATATGGGGAGGTGCGTGTGGCGAGGAGTATGTGGTTGCGATGCGGATTGAGGATCTGGAAGGGGTGAGAACGGGATTAAGGTGGGGATCTGAGGGTATTATCGTTGTAGAGGGGCTGGGCGAGGTGGTGTAGTACGGGATTATGTATGACGTGGAGGGAGGGCGAGCTCTTGTTCGGAGGAGAGTATGTGATGGAGATGGGTAATGGGGGCAGATGTGAGGTGTAGATGTGGTTGGCTGTGAGCTGACTAGTCGTGTGGAATGTAGTGAGAGTGCACTGGGTAGGGTGTGATTGTGAATAGAGAGGGGATGTGGGTAGTATAGTTGTAGTGTGTGTGGTATGATAGATTGGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11480#0 GCGGCGCTGTTGCTGGCTGACCCCACCAAACTTAGCGAGGGGGAAGGGAGAACGGGGGTG 60 consensus_11480#1 ------------------------------------------------------------ consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 AACAGCGCGACGGACGACGGTTAGCGAGCGAGCGACGACGCAACGGAAGAAGAAAAAGAG 120 consensus_11480#1 ------------------------------------------------------------ consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 GAGGACACGGCGGCGCACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCG 180 consensus_11480#1 ------------------------------------------------------------ consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 CGCGCCAATCCGGAGGCGCCACCACCGGTTCGTCGTCCCTCCCCCCTCCTTCCTCCTGTT 240 consensus_11480#1 ---------------TCTCTTCCTCCTCTTC-TCTTCATTCTCTTCCTGTTCCTCTTCTT 44 consensus_11480#2 ----------------------------------------------CTGTTGCTGG-CTG 13 ** ** * consensus_11480#0 CCTCTTCTTGTGAGGCCGCCAGGAAGAGGGATAGGAGAGGAGGCGGAGGCGGCGCGACCT 300 consensus_11480#1 CCTCCTCCCATCTCTTCGTCTTCCT----CCTCTGGATCCGCCCCCTCCCCTCTCCTCCC 100 consensus_11480#2 ACCCCACCAAACTTAGCGAGGGGGA-----AGGGAGAACGGCGGTGAACAGCGCGACGGA 68 * * * ** consensus_11480#0 GACCCGTCGCGCG--CCAGCAGCGGTTGC--GACGGCGTCGGCGGCGTGGTTGTGTAGAT 356 consensus_11480#1 CACCTCTCAGACGGTCGGGCCACGGCGGCCAGGCGGCG-CGGAGGCGGCCTCGCGC-GGC 158 consensus_11480#2 CGACGGTTAG-CGAGCGAGCGACGACGC---AACGGAAGAAGAAATAGAGGAGGAC--AC 122 * * ** * ** ** *** * * consensus_11480#0 AGATTGGTTTGGTTTGGTTGCCGGGGAAGAGAGAGAGAGAAGAGAGAGGGGATGGCGAGG 416 consensus_11480#1 GGCCTGGC---GGCAGCGAATCTGGGAGGGGAGGCGGCTGGCTGTCCTCTTCTCTTCATT 215 consensus_11480#2 GGCGGCGC----ACGGGAGGGAGGAAAGAAGAGGAGGACGACGACGCGCGCGCGCGCGCG 178 * * * * * *** * consensus_11480#0 TTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTC 476 consensus_11480#1 CTCATCCTGAGCCTGCTGGAGCTCGGCGTCAGCGCGACGGTGCACCTGCTCTTCGGGCTC 275 consensus_11480#2 CCAATCCGGAGGCGCCATCACCGGTTCGTCGTCCCTGCGCCCTACTTGCTGCTGTGTCTC 238 **** *** * * * * **** * * ** ** **** * * *** consensus_11480#0 TACGTCTTCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGC 536 consensus_11480#1 TACGTCTTCAGCACGGCCGTCGCGGCGGACATCTCGCAGGCGGCGGCGGCCTCGGGGTGC 335 consensus_11480#2 TTCGTGTGAGGC-CGCCAGGAAGAGGGATAGGAGAGGGGGCGGAGGCGGCGCTGAACTGA 297 * *** * ** ** * * * * * ***** ****** * ** consensus_11480#0 CTGCTGCTGCGCCGCCCGGCGGCGCCG-GGGCTCGTCAACGTCGCCGCGGCCGGGGAGGA 595 consensus_11480#1 CTGCTGCTGCGCCGCCCGGCGGCGCCG-GGGCTCGTCAACGTCGCCGCGGCCGGGGAGGA 394 consensus_11480#2 CCGATCGCGCGCCAGCAGGTGTTGTGACGGGATCTGAGGTATGGTAGT--CTCGATAGGG 355 * * * ***** * ** * * *** ** * * * * * *** consensus_11480#0 GGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCT 655 consensus_11480#1 GGAGGAGCGGAGGGGCGCCGCGCCCGTCGTGCTCGACGGCTCGCCTCCGCCCATCGTCCT 454 consensus_11480#2 TGGGGTGTGAGGCAGCGC-GTGCGGAATGAATGTGAGAGTTGGGATCGGTGAGGGTGAGT 414 * ** * * * **** * ** * ** * * * ** * * consensus_11480#0 CGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGG 715 consensus_11480#1 CGTCCACGGCATCTTCGGCTTCGGGAAAGGGAGGCTCGGCGGGCTCTCCTACTTCGCCGG 514 consensus_11480#2 AGTTGGTGGTGGGTTGGAGTATGTGGTGGAGCTGATCAGGTGGGGCGC-------ATTGG 467 ** ** ** * * * * * * * ** * ** * * ** consensus_11480#0 CGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCA 775 consensus_11480#1 CGCCGAGAAGAAGGACGACCGCGTGCTCGTGCCGGATTTGGGGTCCCTCACCAGCATCCA 574 consensus_11480#2 TGT-----AGATTGGCGA--GTGTGGTGATATGGGG--AGGTGCGTGTGGCGAGGA---G 515 * *** * *** * *** * * ** ** * * * ** * consensus_11480#0 TGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGG-ATTATGGCGAGG 834 consensus_11480#1 TGACAGGGCGCGCGAGCTGTTCTACTACCTCAAAGGAGGGCAGGTGG-ATTATGGCGAGG 633 consensus_11480#2 TATGTGGTTGCG-ATGCGGATTGAGGATCTGGAAGGGGTGAGAACGGGATTAAGGTGGGG 574 * ** *** ** * * * * ** **** * * ** **** ** * ** consensus_11480#0 AGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACC 894 consensus_11480#1 AGCACAGCAAGGTTTTCGGGCACACGCGGTTCGGGAGGACGTATGACACAGGACATTACC 693 consensus_11480#2 ATCTGAGGGTATTATCGTTGTAGAGGGGCTGGGCGAGGTGGTGTAGTACGGGATTATGTA 634 * * ** * * * * * * * * * **** ** * ** *** * consensus_11480#0 CGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTG 954 consensus_11480#1 CGGTCTGGGACGAGCAAAACCCGGTGCACTTTGTCGGGCACTCGGCCGGCGTGCAGGTTG 753 consensus_11480#2 TGACGTGGAGGGAG------------------GGCGAGCTCTTGTTCGGAGGAGAGTATG 676 * *** *** * ** ** ** * *** * ** ** consensus_11480#0 TGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAG 1014 consensus_11480#1 TGAGGGTGCTGCATCAGATGCTTGCCGATAAGGCTTTCCCTGGACATGATACTTCTGAAG 813 consensus_11480#2 TGATGGAGATGGGT--AATGGGGGCAGATGTGAGGT---GTAGATGTGGT-TGGCTGTGA 730 *** ** * ** * *** ** *** * * * ** ** * *** consensus_11480#0 ACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACT 1074 consensus_11480#1 ACTGGGTTCTTAGCCTTACTTCCTTGTCGGGTGCGCTTAATGGAACCACTAGAACTTACT 873 consensus_11480#2 GCTGA----CTAGTCGT--------GTGGAATG----TAGTGAGAGTGC----ACTGGGT 770 *** *** * * ** * ** ** ** * * *** * consensus_11480#0 ATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCT 1134 consensus_11480#1 ATGATGGCATGCTGGCTGAAGACGGAAGATCCATGAAATCAATCTGTCTTCTTCAGCTCT 933 consensus_11480#2 AGGGTGTGATTGTGAATAGAGAGGGGATGTGGGTAGTATAGTTGTAGTGTGTGTGG-TAT 829 * * ** ** ** * *** ** * * * ** * * * * * * * consensus_11480#0 GCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACA 1194 consensus_11480#1 GCCGGATTGGAGTTATCGTCTATGATTGGCTAGACATTCCTTGGCTGAAGAATTACTACA 993 consensus_11480#2 GATAGATTGGGGG----------------------------------------------- 842 * ****** * consensus_11480#0 ATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTG 1254 consensus_11480#1 ATTTTGGTTTTGACCACTTTGAGATGTCATGGAGGAAAGTGGGCCTCTCAGGTCTAATTG 1053 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 ATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTA 1314 consensus_11480#1 ATCTGTTGCTGGGGCACACTGGCCCATTTGCCTCAGGAGATTGGATTCTGCCTGATCTTA 1113 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 CGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACT 1374 consensus_11480#1 CGATTCAAGGATCTCTAACACTTAACTCTACATTGAGGACCTTCCCAAATACATTCTACT 1173 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 TCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCC 1434 consensus_11480#1 TCAGTTATGCTACGAAGAGAACAAGAAAGCTTTTTGGAATTACAGTGCCTTCAAGCGTCC 1233 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 TTGGAATTCACCCCATGCTCTTCCTCCGAGTCCTCCAAATGTGTATGTGGAGGCACCCTC 1494 consensus_11480#1 TTGGAATTCACCCCATGCTCTTCCTCCGAGTCTTCCAAATGTGTATGTGGAGGCACCCTC 1293 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 AAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGG 1554 consensus_11480#1 AAAATGCACCTCTACCTTACAAAGGATACAGGGATGAAGATTGGGAAGATAATGATGGGG 1353 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 CTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGG 1614 consensus_11480#1 CTTTGAACACAATCTCCATGACGCACCCTCGCATTCCTACAGAGCATCCAAACCGTTTGG 1413 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 TAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTG 1674 consensus_11480#1 TAGTGGATGATTCTGATTGCCATCCTTTGCAGCCTGGGATATGGTATTACAAGATAATTG 1473 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 AGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGC 1734 consensus_11480#1 AGGCTGATCACATTCTTTTCATTGTAAATCGTGAAAGAGCCGGAGTGCAGTTTGATTTGC 1533 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 TGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTG 1794 consensus_11480#1 TGTATGATGGCATTTTCCAACGGTGCAGAAAGCACGCATTTAGGAGGAGCCCCCCTACTG 1593 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 TACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGA 1854 consensus_11480#1 TACCAAATGAATCGAGTCAAAGTCAATAGCAGACTACACCAAAAATGAAATCTATCTAGA 1653 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 AAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCG 1914 consensus_11480#1 AAGTAGAATGGAAGGAAAAAAAGGAATCACGACGGTTTTTCTGCTTCTCTTTCGCCCCCG 1713 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 GCAACCATGTAGATGTAAACAACATTGTAAACTGTAAATTACATTATTCATTTGACTATG 1974 consensus_11480#1 GCAACCATGTAGATGTAAACAACATTGTAAACTGTAAATTACATTATTCATTTGACTATG 1773 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 TGAGGAGCATTGCATAAAAAAAAGACTGATTCCTGGGAGTGAGTGAAGTTCAAGCTAACA 2034 consensus_11480#1 TGAGG------------------------------------------------------- 1778 consensus_11480#2 ------------------------------------------------------------ consensus_11480#0 GTTTGGCCCTGAAAAAAAAAAGA 2057 consensus_11480#1 ----------------------- consensus_11480#2 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||