These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1933 fasta sequence [CTTCCTCTCGCATCCTAGCGGCAGCGGCAGCGGCAGCCTCCTCCTCCTCCGCCGCCGCCGCTCCTCTTCCCTCTCCCAACTCCCGTACGGGCGTACGGCCGCCTCGTCGCCGGATTTTTTTTTTCGTTCCCCCGGCGAGCTTGCACTCTCTTTTCTTCGATTCTCTTTCGGCTTTGCTTCTTCGGTCGC-TTTTTTTTTTGGCTGTTCCTGGTCGATCCCGGCGAAGGAGGTGGTCGGGAAGCAAGATTTGAACTACTCCTCCTCATGGCTTCCATGCCGCAGCTGGAGGAAAAGGATTCATCCGATTTGGCAATCAACAAAGGCCCGTCGCTGGATCTTGTCAAATCTCCCTTGATGATGAATGATGCATCTGCAACTGTAACTGCAATGCAGCCCAACGAGGGGATGGAGGAGTTCCCTGTCAAGGTTCGGAAGCCTTACACGATCACCAAGCAGCGGGAGAAGTGGACGGAAGAAGAGCACGACAAGTTCCTTGAGGCATTGAAGCTGTATGGTCGCTCTTGGCGTCAGATACAAGAGCACATTGGCACAAAGACTGCTGTCCAAATTCGGAGCCATGCCCAGAAGTTTTTCTCAAAGGTGGTGCGTGAGCCCGGTTCCAATAATGCGATTGAGATCCCTCCACCTAGGCCAAAGAGAAAACCACTTCATCCGTACCCTCGAAAGTGTGCGAATTCTGGATCGGACGCAAATCCAGCAACAGCGCAATTGAAGCTTGCTCCTGGCTCATCTTCATCTGGCTCTGATCAAGAGAATGGTTCTCCTATATCGGTGCTATCTGCGATGCAGTCAGATGCTTTTGGATCGTCAGTATCCAATCCATCAACCAGATGTACCTCCCCAGCGTCATCTGACGATGGAAATAACATTCCCACATTCACGAGTGGGGAAGATAATAATGTGCCTTGTGAACCAACAGTGATAGATCCGTCCCAGTCCCACAAGGAAATAGACCAAGATAGAAAAGACGTGAATAATATGTCTGAAGAGGATTCTTCAGAAGAAGAGGTGCAAGAAACAAGCTTGAAGCTATTTGGGAGGACAGTTGTCATCCCAGATCCAAGGAAGAGAAGCTCCTCAGATCCGAAGCATGAAAGTGAGGAGCAGATATCACAGCCTTCCAATGAAGAAATGTTGCAGGCTTCTTCATCGGTTGGGGAGATTCCAGCGGCATATTGTGCACCAAATGGTTGGTTTATGTCATACAATTCTTTCCCATTCCAATTCGGTGAATCAGCGGCAGATGCTAGAATTCCCCCTTTACACGTGTGGTGGCCTTACTACGGTTTTGCTCCCATTAGCCATCCTAGAGGACTAAGCACAGTGATGCAGCAGACTGAAGGTAGTGACGAGAGTGACGGTGTGAAGAGCCA-CTCATCCGAATCAAGTTCGGACTCCGGGGAAAATGTGCAGATGACCGCTCCCCAGAGCTCGAGAATAGTGGAATCACTTGGAGCGATTTACGTCCGAGACTCAGGTTCAAGTTTTGAGCTAAAACCGAGCGCAAATTCAGCGTTTGTAAGAGTGAAGCCAAGCAACAGCGGAGATGAAGAGGTAATAAGGGGATTTGTGCCTTATAAAAGATGCAAATTTCAATAACGCAGGCAAGCGGGTATTTTCTTGAAAGCTGCTAATTTAACAGAGAAGAGTAGGAGCACGAACGTTGCTTGCATCA-CTGTA-TTTTTTTTTGTTTGTTTGCGGGGATTGGTGGTGCATTAATGAATTGTTTGCTGCTTGCACCTTAAAA-AGGATAGAGATGGTGTAAGCA-GTTTGTTGCTGTAAGAATGTTACATGTAGACTAGTACTTAAAATTATAGGGGATGCCAATCTCTGCCCTGATGATGTTGTAAAAG-CAGTA-CGCACCAT-GTTTTACCTCTGGTTGAAAGCTAAGCTGTTAATGGAAAAAAAAGGA] [+] EMBL AK111637 [CTTCCTCTCGCATCCTAGCGGCAGCGGCAGCGGCAGCCTCCTCCTCCTCCGCCGCCGCCGCTCCTCTTCCCTCTCCCAACTCCCGTACGGGCGTACGGCCGCCTCGTCGCCGGATTTTTTTTTTCGTTCCCCCGGCGAGCTTGCACTCTCTTTTCTTCGATTCTCTTTCGGCTTTGCTTCTTCGGTCGC TTTTTTTTTTGGCTGTTCCTGGTCGATCCCGGCGAAGGAGGTGGTCGGGAAGCAAGATTTGAACTACTCCTCCTCATGGCTTCCATGCCGCAGCTGGAGGAAAAGGATTCATCCGATTTGGCAATCAACAAAGGCCCGTCGCTGGATCTTGTCAAATCTCCCTTGATGATGAATGATGCATCTGCAACTGTAACTGCAATGCAGCCCAACGAGGGGATGGAGGAGTTCCCTGTCAAGGTTCGGAAGCCTTACACGATCACCAAGCAGCGGGAGAAGTGGACGGAAGAAGAGCACGACAAGTTCCTTGAGGCATTGAAGCTGTATGGTCGCTCTTGGCGTCAGATACAAGAGCACATTGGCACAAAGACTGCTGTCCAAATTCGGAGCCATGCCCAGAAGTTTTTCTCAAAGGTGGTGCGTGAGCCCGGTTCCAATAATGCGATTGAGATCCCTCCACCTAGGCCAAAGAGAAAACCACTTCATCCGTACCCTCGAAAGTGTGCGAATTCTGGATCGGACGCAAATCCAGCAACAGCGCAATTGAAGCTTGCTCCTGGCTCATCTTCATCTGGCTCTGATCAAGAGAATGGTTCTCCTATATCGGTGCTATCTGCGATGCAGTCAGATGCTTTTGGATCGTCAGTATCCAATCCATCAACCAGATGTACCTCCCCAGCGTCATCTGACGATGGAAATAACATTCCCACATTCACGAGTGGGGAAGATAATAATGTGCCTTGTGAACCAACAGTGATAGATCCGTCCCAGTCCCACAAGGAAATAGACCAAGATAGAAAAGACGTGAATAATATGTCTGAAGAGGATTCTTCAGAAGAAGAGGTGCAAGAAACAAGCTTGAAGCTATTTGGGAGGACAGTTGTCATCCCAGATCCAAGGAAGAGAAGCTCCTCAGATCCGAAGCATGAAAGTGAGGAGCAGATATCACAGCCTTCCAATGAAGAAATGTTGCAGGCTTCTTCATCGGTTGGGGAGATTCCAGCGGCATATTGTGCACCAAATGGTTGGTTTATGTCATACAATTCTTTCCCATTCCAATTCGGTGAATCAGCGGCAGATGCTAGAATTCCCCCTTTACACGTGTGGTGGCCTTACTACGGTTTTGCTCCCATTAGCCATCCTAGAGGACTAAGCACAGTGATGCAGCAGACTGAAGGTAGTGACGAGAGTGACGGTGTGAAGAGCCA CTCATCCGAATCAAGTTCGGACTCCGGGGAAAATGTGCAGATGACCGCTCCCCAGAGCTCGAGAATAGTGGAATCACTTGGAGCGATTTACGTCCGAGACTCAGGTTCAAGTTTTGAGCTAAAACCGAGCGCAAATTCAGCGTTTGTAAGAGTGAAGCCAAGCAACAGCGGAGATGAAGGGGTAATAAGGGGATTTGTGCCTTATAAAAGATGCAAATTTCAATAACGCAGGCAAGCGGGTATTTTCTTGAAAGCTGCTAATTTAACAGAGAAGAGTAGGAGCACGAACGTTGCTTGCATCA CTGTA TTTTTTTTTGTTTGTTTGCGGGGATTGGTGGTGCATTAATGAATTGTTTGCTGCTTGCACCTTAAAA AGGATAGAGATGGTGTAAGCA GTTTGTTGCTGTAAGAATGTTACATGTAGACTAGTACTTAAAATTATAGGGGATGCCAATCTCTGCCCTGATGATGTTGTAAAAG CAGTA CGCACCAT GTTTTACCTCTGGTTGAAAGCTAAGCTGTTAATGGA ] [+] EMBL AK119632 [ TTCCTCTCGCATCCTAGCGGCAGCGGCAGCGGCAGCCTCCTCCTCCTCCGCCGCCGCCGCTCCTCTTCCCTCTCCCAACTCCCGTACGGGCGTACGGCCGCCTCGTCGCCGGATTTTTTTTTTCGTTCCCCCGGCGAGCTTGCACTCTCTTTTCTTCGATTCTCTTTCGGCTTTGCTTCTTCGGTCGCTTTTTTTTTTTGGCTGTTCCTGGTCGATCCCGGCGAAGGAGGTGGTCGGGAAGCAAGATTTGAACTACTCCTCCTCATGGCTTCCATGCCGCAGCTGGAGGAAAAGGATTCATCCGATTTGGCAATCAACAAAGGCCCGTCGCTGGATCTTGTCAAATCTCCCTTGATGATGAATGATGCATCTGCAACTGTAACTGCAATGCAGCCCAACGAGGGGATGGAGGAGTTCCCTGTCAAGGTTCGGAAGCCTTACACGATCACCAAGCAGCGGGAGAAGTGGACGGAAGAAGAGCACGACAAGTTCCTTGAGGCATTGAAGCTGTATGGTCGCTCTTGGCGTCAGATACAAGAGCACATTGGCACAAAGACTGCTGTCCAAATTCGGAGCCATGCCCAGAAGTTTTTCTCAAAGGTGGTGCGTGAGCCCGGTTCCAATAATGCGATTGAGATCCCTCCACCTAGGCCAAAGAGAAAACCACTTCATCCGTACCCTCGAAAGTGTGCGAATTCTGGATCGGACGCAAATCCAGCAACAGCGCAATTGAAGCTTGCTCCTGGCTCATCTTCATCTGGCTCTGATCAAGAGAATGGTTCTCCTATATCGGTGCTATCTGCGATGCAGTCAGATGCTTTTGGATCGTCAGTATCCAATCCATCAACCAGATGTACCTCCCCAGCGTCATCTGACGATGGAAATAACATTCCCACATTCACGAGTGGGGAAGATAATAATGTGCCTTGTGAACCAACAGTGATAGATCCGTCCCAGTCCCACAAGGAAATAGACCAAGATAGAAAAGACGTGAATAATATGTCTGAAGAGGATTCTTCAGAAGAAGAGGTGCAAGAAACAAGCTTGAAGCTATTTGGGAGGACAGTTGTCATCCCAGATCCAAGGAAGAGAAGCTCCTCAGATCCGAAGCATGAAAGTGAGGAGCAGATATCACAGCCTTCCAATGAAGAAATGTTGCAGGCTTCTTCATCGGTTGGGGAGATTCCAGCGGCATATTGTGCACCAAATGGTTGGTTTATGTCATACAATTCTTTCCCATTCCAATTCGGTGAATCAGCGGCAGATGCTAGAATTCCCCCTTTACACGTGTGGTGGCCTTACTACGGTTTTGCTCCCATTAGCCATCCTAGAGGACTAAGCACAGTGATGCAGCAGACTGAAGGTAGTGACGAGAGTGACGGTGTGAAGAGCCA CTCATCCGAATCAAGTTCGGACTCCGGGGAAAATGTGCAGATGACCGCTCCCCAGAGCTCGAGAATAGTGGAATCACTTGGAGCGATTTACGTCCGAGACTCAGGTTCAAGTTTTGAGCTAAAACCGAGCGCAAATTCAGCGTTTGTAAGAGTGAAGCCAAGCAACAGCGGAGATGAAGAGGTAATAAGGGGATTTGTGCCTTATAAAAGATGCAAATTTCAATAACGCAGGCAAGCGGGTATTTTCTTGAAAGCTGCTAATTTAACAGAGAAGAGTAGGAGCACGAACGTTGCTTGCATCA CTGTA TTTTTTTTTGTTTGTTTGCGGGGATTGGTGGTGCATTAATGAATTGTTTGCTGCTTGCACCTTAAAA AGGATAGAGATGGTGTAAGCA GTTTGTTGCTGTAAGAATGTTACATGTAGACTAGTACTTAAAATTATAGGGGATGCCAATCTCTGCCCTGATGATGTTGTAAAAG CAGTA CGCACCAT GTTTTACCTCTGGTTGAAAGCTAAG ] [+] EMBL CB676731 [ GCGTCCTTACTGCTGCGGCAGCGGTAGCCTCCTCCTCCTCCGCCGCCGCCGCTCCTCTTCCCTCTCCCAACTCCCGTACCGGCGTACGGCCGCCTCGTCGCCGGATTTTTTTTTTCGTTCCCCCGGCGAGCTTGCGCTCTCTTTTCTTCCATTCTCTTTCGGCTTTGCTTCTTCGGTCGC TTTTTTTTTTGGCTGTTCCTGGTCGATCCCGGCGAAGGAGGTGGTCGGGAAGCAAGATTTGAACTACTCCTCCTCATGGCTTCCATGCCGCAGCTGGAGGAAAAGGATTCCTCCGATTTGGCAATCAACAAAGGCCCGTCGCTGGATCTTGTCAAATCTCCCTTGATGATGAATGATGCATCTGCAACTGAAACTGCAATGCCTCCCAACTAGGGGATGGAGGAGTTCCCTGTCAAGGTTCGGAAGCCTTACACGATCACCAAGCTCCGGGA ] [+] EMBL CB685919 [ TTCCAATCCTGCGATTGAGATCCCTCCACCTAGGCCAAAGAGAAAACCACTTCATCCGTACCCTCGAAAGTGTGCGAATTCTGGATCGGACGCAAATCCAGCAACAGCGCAATTGAAGCTTGCTCCTGGCTCATCTTCATCTGGCTCTGATCAAGAGAATGGTTCTCCTATATCGGTGCTATCTGCGATGCAGTCAGATGCTTTTGGATCGTCAGTATCCAATCCATCAACCAGATGTACCTCCCCAGCGTCATCTGACGATGGAAATAACATTCCCACATTCACGAGTGGGGAAGATAATAATGTGCCTTGTGAACCAACAGTGATAGATCCGTCCCAGTCCCACAAGGAAATAGACCAAGATAGAAAAGACGTGAATAATATGTCTGAAGAGGATTCTTCAGAAGAAGAGGTGCAAGAAACAAGCTTGAAGCTATTTGGGAGGACAGTTGTCATCCCAGATCCAAGGAAGAGAAGCTCCTCAGATCCGAAGCATGAAAGTGAGGAGCAGATATCACAGCCTTCCAATGAAGAAATGTTGCAGGCTTCTTCATCGGTTGGGGAGATTCCAGCGGCATATTGTGCACCAAATGGTTGGTTTATGTCATACAATTCTTTCCCATTCCAATTCGGTGAATCAGCGGCAGATGCTAGAATTCCCCCTTTACACGTGTGGTGGCCTTACTACGGTTTTGCTCCCATTAGCCATCCTAGAGGACTAAGCACAGTGATGCAGCA ] [-] EMBL CA761078 [ GACGTGAATAATATGTCTGAAGAGGATTCTTCAGAAGAAGAGGTGCAAGAAACAAGCTTGAAGCTATTTGGGAGGACAGTTGTCATCCCAGATCCAAGGAAGAGAAGCTCCTCAGATCCGAAGCATGAAAGTGAGGAGCAGATATCACAGCCTTCCAATGAAGAAATGTTGCAGGCTTTTTTATCGGTTGGGGAGATTCCAGCGGCATATTGTGCACCAAATGGATGGTTTATGTCATACAATTCTTTCCCATTCCAATTCGGTGAATCAGCGGCAGATGCTAGAATTCCCCCTTTACACGTGTGGTGGCCTTACTACGGTTTTGCTCCCCTTAGCCATCCTAGGGGACTAAGCACAGTGATGCAGCAGACTGAAGGTAGTGACGAGAGTGACGGTGGGAAGAGCCA CTCATCCGAATCAAGCTCGGACTCCGGGGAAAATGTGCAGATGACCGCTCCCCAGAGCTCGAGAATAGTGGAGTCACTTGGAGCGATTTACGTCCGAGACTCAGGTTCAAGTTTTGAGCTAAAACCGAGCGCAAATTTAGCGTTTGTAAGAGTGAAGCCAAGCAACAGCGGAGATGAAGAGGTAATAAGGGGATTTGTGCCTTATAAAGGATGCAAATTTCAATAACGCAGGCAAGCGGGTATTTTCTTGAAAaaaaaaaa ] [-] EMBL CB676732 [ AGAAATGTTGCAGGCTTCTTCATCGGTTGGGGAGATTCCAGCGGCATATTGTGCACCAAATGGTTGGTTTATGTCATACAATTCTTTCCCATTCCAATTCGGTGAATCAGCGGCAGATGCTAGAATTCCCCCTTTACACGTGTGGTGGCCTTACTACGGTTTTGCTCCCATTAGCCATCCTAGAGGACTAAGCACAGTGATGCAGCAGACTGAAGGTAGTGACGAGAGTGACGGTGTGAAGAGCCA CTCATCCGAATCAAGTTCGGACTCCGGGGAAAATGTGCAGATGACCGCTCCCCAGAGCTCGAGAATAGTGGAATCACTTGGAGCGATTTACGTCCGAGACTCAGGTTCAAGTTTTGAGCTAAAACCGAGCGCAAATTCAGCGTTTGTAAGAGTGAAGCCAAGCAACAGCGGAGATGAAGAGGTAATAAGGGGATTTGTGCCTTATAAAAGATGCAAATTTCAATAACGCAGGCAAGCGGGTATTTTCTTGAAAGCTGCTAATTTAACAGAGAAGAGTAGGAGCACGAACGTTGCTTGCATCA CTGTA TTTTTTTTTGTTTGTTTGCGGGGATTGGTGGTGCATTAATGAATTGTTTGCTGCTTGCACCTTAAAA AGGATAGAGATGGTGTAAGCA GTTTGTTGCTGTAAGAATGTTACATGTAGACTAGTACTTAAAATTATAGGGGATGCCAATCTCTGCCCTGATGATGTTGTAAAAGCCAGTACCGCACCATAGTGTTACCTCTGGTTGAAAGCTAAGCTGTTAATGGAAAAAAAAGGA] [-] EMBL CB673428 [ CACCAAATGGTTGGTTTATGTCATACAATTCTTTCCCATTCCAATTCGGTGAATCAGCGGCAGATGCTAGAATTCCCCCTTTACACGTGTGGTGGCCTTACTACGGTTTTGCTCCCATTAGCCATCCTAGAGGACTAAGCACAGTGATGCAGCAGACTGAAGGTAGTGACGAGAGTGACGGTGTGAAGAGCCA CTCATCCGAATCAAGTTCGGACTCCGGGGAAAATGTGCAGATGACCGCTCCCCAGAGCTCGAGAATAGTGGAATCACTTGGAGCGATTTACGTCCGAGACTCAGGTTCAAGTTTTGAGCTAAAACCGAGCGCAAATTCAGCGTTTGTAAGAGTGAAGCCAAGCAACAGCGGAGATGAAGAGGTAATAAGGGGATTTGTGCCTTATAAAAGATGCAAATTTCAATAACGCAGGCAAGCGGGTATTTTCTTGAAAGCTGCTAATTTAACAGAGAAGAGTAGGAGCACGAACGTTGCTTGCATCA CTGTA TTTTTTTTTGTTTGTTTGCGGGGATTGGTGGTGCATTAATGAATTGTTTGCTGCTTGCACCTTAAAA AGGATAGAGATGGTGTAAGCA GTTTGTTGCTGTAAGAATGTTACATGTAGACTAGTACTTAAAATTATAGGGGATGCCAATCTCTGCCCTGATGATGTTGTAAAAG CAGTA CGCACCAT GTTTTACCTCTGGTTGAAAGCTAAGCTGTTAAT ] [-] EMBL CB685920 [ GATTTAGCCCAGTGATGCAGCAGCCTGAAGCTAGTGTCGAGAGTGACGGTGTGAAGAGCCATCTCATCCGAATCAAGTTCGGTCTCCGGGGAAAATGTGCAGATGATCGCTCCCCAGAGCTCGCGAATAGTGGAATCACTTGGAGCGATTTACGTCCGAGACTCAGGTTCAAGTTTTGAGCTAAAACCGAGCGCAAATTCAGCGTTTGTAAGAGTGAAGCCAAGCAACAGCGGAGATGAAGAGGTAATAAGGGGACTTGTCCCTTATAAATGATGCACATTTCAATAACGCAGGCAAGCGGGTATTTTCTCGAAAGCTGCTAATTTAACAGAGAAGAGTAGGAGCAC ] [+] EMBL BM419256 [ TACGTCCGAGACTCAGGTTCAAGTTTTGAGCTAAAACCGAGCGCAAATTCAGCGTTTGTAAGAGTGAAGCCAAGCAACAGCGGAGATGAAGAGGTAATAAGGGGATTTGTGCCTTATAAAAGATGCNAATTTCAATAACGCAGGCAAGCGGGTATTTTCTTGAAAGCTGCTAATTTAACAGAGAAGAGTAGGAGCACGAACGTTGCTTGCATCACCTGTATTTTTTTTTTGTTTGTTTGCGGGGATTGGTGGTGCATTAATGAATTGTTTGCTGCTTGCACCNTAAAACAGGATAGAGATGGTGTAAGCACGTTTGTTGCTGTAAGAATGTTACATGTAGACTAGTACTTAAAATTATAGGGGATGCCAATCTCTGCCCTGATGATGTTGTAAAAG CAGTA CGCACCAT GTTTTACCTCTGGTTGAAAGCTAAGCCGTTAATGGAAAAAAAAaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||