These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 3608 fasta sequence [AGGAGTACTCAGTCTCAGACAGTGTGCAGCATTAGGAGGGAGAAGCAGAAGAAGAGAAGCCCCTACCAACCTAATCCTTGACTGCTCTCCAGGCACAAACGCTTCCATTGCCACCTCTCGTTTTCTTCCTCTCTCTCACGGACCCTGTGTTGGTCGGTTTCGTTCTTGGTTTCCTCGAGCCTGTTCCGTCCTGATTCCTGAACAAGAGGTTGGCAACTGCGAGAGAAGTTGTTGCCGGAGTGTTGGTTCGTCTGTCCGTGGATTCTTTGGTTGGTGTTCTTCGTCTGGTGGTGGTGGTGGTGGTGGATCGGCCATGTTCGTCAGGAAGCTTGTGGAGAAGGCCTCCAAGAAGCATCGCATCGGAGGTATCAGCGGCCTCCGCGCCGAGGACGTGAGCCCGCGGCTGGCGTTCCACTACGGCGTCCCCGCCGACGCCGCGCTCCTCGCCTACGACCCCGCCCTCCACGTCCTCGCCGTCGCCACCAGGAATGGGCAGATCAAGCTGTTCGGCCGCGACAACACGCAGGCGCTGCTCCAATCCCCGTCCCCCGTCCCCTCCAAGTTCCTGCGGTTTGCCGAGGGGCAAAGGGTTCTCCTGAACGTGAACGCCAAGAACCAGATCGAGATTTGGGACATCGACACAAAGAAGTTGTGTTATGTGCATCCGTTCGAGAAGGAAATCACGGCATTTTCCGTTCTGCAGAATAGCTTCTACATCTATGTGGGTGATAGTTTTGGGAATGTGTCCCTGTTGAAGCTTGACTTGGGTCAGACATGTCTAGTTGACATGCCATATTGGATTCCTTTCTCTGAATCTTATGGTTCTGGAGCAAATGTTGGTAATGAGGTTGAAGTTGCATTTGTATCGCCACAGCCTTTGGCTGAAAATAACAGAGTGCTCATTATCTTCAGAGATGGGATTATGTCTTTGTGGGATATTAAGACGAGCAAAGTGGTATCTTTATCCGGCAAATCTATGCAACAACAGTCACATCAGGAGGCTAAAGCTGTAACATCGGCATGCTGGGCTTGTGCCAAGGGAAGCAAAATTGCTATTGGATTTGATAGTGGTGATATATATCTTTGGTCTATTCCTGATATTTTAAATGCACAAAATCTCTCATCGATGGGCAATCAAAACCTACCTCTTCAGAGGCTTAACCTTGGATACAAGCTAGACAGGGTGTCTATAGTCTCTTTGCGATGGGTCAATAGTGACGGAAAGGCAGGGCGTTTGTATGTTAATGGATTCAGTGATCATGCATACCTATTTCAGGTCCTGATTCTGAACGAAGAGAGCGAATCACGAATTGTAAAGATGGTTTTGCCTCTCACAGAAGCCTGCCAAGGAATGGAACTTGTTTCAGGGCTTAGTGACCCAAATAAGCACAAACAAAGTGCTCTTGTTCTCTTGTTGAAATCTGGTCAAATTTGCTTATATGATGATTCAGAGATTGAGCGCTACCTTCTTCATGCTCAGTCAAGATCGCCACTAGCACTTCCAAACTATTCATCTGTGAAGCTACCTTATGGTGATCCAAGCATCACCGCTGCAAAGTTTTATACCAGTAGCCCTACAGCTGCGACTTCTTTGGATGAGGACTATTTTTCATCATTGGCCACCAAATACCCATGGTTCCTTTCAATGAAAGATAAACATCAGACTTCCACAGGTTCTGCCGACATTCATAAGACCAGAAATCTCTATGTAACTGGACATCTTGATGGAACCATAAGGTTTTGGGATGCATCATGTCCTCTTTTACTGCAGAATTTAATGATAAAGCACCAGAATGAAGAGAATAGTCCAAGTGGCACCCCTATTACATCATTACAGTTTGATATGTCATCCAGCATTCTAATCTGTGGGGATAGGAGTGGAACGGTCCGTATAATCACATTCAGAAAGGACTCCAGCGATAACATATTCTCCTTTTTACATGCGAAGCAAGGGGAGAGCTATAATGTCAGATGTATAAAGCTTAAAGGCGCTGTAACCTCAATCTCTTTGATCTCGAACTCAAAGCGTGTTGCTGTTGGAACAGAAAAAGGGATTGTATCAGTTGTCAGCATTGAAGATGCATCGATCTTGTATCAAAAACAGCTTGAGTGTCGGGTATCTGGTGGAATCGCATCTTTGCAATTTGAAATGTACAGCCATAATGGCTACGACAAGGATCTTTTGCTAGTAGGAATGGAAGATTCAACTATATATATTCTTGAGGAAGAAACTGGAAAACTTTTGAATACCAACCCAGTTCAGACAAACAAACCCTCCCGAGCCCTATTGATGCAGACACTTGAATTATCACCAGATGATCCATCGTTGTCAGATACCCACGATACAGT-ATCGAAAGAATCACTGTTATTGCTTTGCACTGAAAATGCAATCCGC-TTATTTT-CCTTGAGCCATGCAATTCAGGGAACAAAGAATATAATCAATA-AGAAGAAACCAAATGGTAGTTGCTGTTTTGCATCTCTTATCCACAGTGTTTCTTCTGAAATTGGACTTCTACTTGTCTTC-TCCAATGGCAAAATAGAGATAAGATCCCTCCCAGATTTATCTATATTGAAGGAAGCCTCTTTAAGAGGTTTTTCATATACA-AGAAACTTGAATTCTTCTAGCTCCATAGCATGTTCATCTGATGGAGAAATCATCTTGGTTAATGGAGAGGAGACATTTTTTTTCTCTACTCTCTGTCAGAATGACATCTACAGGCATGTAGACAGCATTAATACAATATACAGAAAAGACAACTCGCCCAGGGAAGAATCTTCTTATGTAGTGAAGTCCCCCAGAGAAAAGAAAAAGGGCATATTCGGAATGATTATGAAAGATACTAAAGCAAGCAAGGGAAAACAGAGCGATGCAAATGGAGATGAACAATTTACTGCAACAACTTCCGAAGAGCTGTCTTCAATATTTTCATGTGCTAATTTTGCTCCAGTATCTGAGAAGAGGAACAGTTCAATAAAAGATGACGAGAACATTGAACTAGATATAGATGATATCAACATTGATGATAACCCGCAAAAGCAGAAAGGACCACACTTCCCAGGTCTAAGCAAACAGAAAATCAGCAAGGGATTCCAAAGCCTAAGAGAAAAGTTGAAGCCCAGGACAGAAGAAAAGGTGAATTCAGGG-AATAGAAAACCTGAAGACGACACATCAGTCAGTCAAGTTGACCAGATAAAGATGAAATATGGATATGCAACAAATGATGACCCCA-CTAGCCTACCAAAAATGATTGGGAACAAGCTGCAAGAGAATATAAAAAAGTTGGAGGGCATTAATATTCGCGCTGGAGATATGGCCAACGGTGCTCAATCCTTCTCGGCAATGGCAAAAGAACTG-CTGCGAAACACAAAGAACGAGAAGGCCACATCGTAGAAATGGCACATACATGTACCTTCCCCTC---TCAGTTTTGAGTGTTCCTGTTCATTCAGTGCAGTTCTTCTACCGCATGAAATAATTCTGTTGTAAATAATGATTGAGAATCACAGCAAGAATTTACTGGTGAATTTCTTTCCCAGATGCGTTGGTAGCATGTATAGTACCACTTGATAGTCATCATAAATGAACTGTTTTTCTGTTAAGAAAAGAAAAA] [+] EMBL AK111806 [AGGAGTACTCAGTCTCAGACAGTGTGCAGCATTAGGAGGGAGAAGCAGAAGAAGAGAAGCCCCTACCAACCTAATCCTTGACTGCTCTCCAGGCACAAACGCTTCCATTGCCACCTCTCGTTTTCTTCCTCTCTCTCACGGACCCTGTGTTGGTCGGTTTCGTTCTTGGTTTCCTCGAGCCTGTTCCGTCCTGATTCCTGAACAAGAGGTTGGCAACTGCGAGAGAAGTTGTTGCCGGAGTGTTGGTTCGTCTGTCCGTGGATTCTTTGGTTGGTGTTCTTCGTCTGGTGGTGGTGGTGGTGGTGGATCGGCCATGTTCGTCAGGAAGCTTGTGGAGAAGGCCTCCAAGAAGCATCGCATCGGAGGTATCAGCGGCCTCCGCGCCGAGGACGTGAGCCCGCGGCTGGCGTTCCACTACGGCGTCCCCGCCGACGCCGCGCTCCTCGCCTACGACCCCGCCCTCCACGTCCTCGCCGTCGCCACCAGGAATGGGCAGATCAAGCTGTTCGGCCGCGACAACACGCAGGCGCTGCTCCAATCCCCGTCCCCCGTCCCCTCCAAGTTCCTGCGGTTTGCCGAGGGGCAAAGGGTTCTCCTGAACGTGAACGCCAAGAACCAGATCGAGATTTGGGACATCGACACAAAGAAGTTGTGTTATGTGCATCCGTTCGAGAAGGAAATCACGGCATTTTCCGTTCTGCAGAATAGCTTCTACATCTATGTGGGTGATAGTTTTGGGAATGTGTCCCTGTTGAAGCTTGACTTGGGTCAGACATGTCTAGTTGACATGCCATATTGGATTCCTTTCTCTGAATCTTATGGTTCTGGAGCAAATGTTGGTAATGAGGTTGAAGTTGCATTTGTATCGCCACAGCCTTTGGCTGAAAATAACAGAGTGCTCATTATCTTCAGAGATGGGATTATGTCTTTGTGGGATATTAAGACGAGCAAAGTGGTATCTTTATCCGGCAAATCTATGCAACAACAGTCACATCAGGAGGCTAAAGCTGTAACATCGGCATGCTGGGCTTGTGCCAAGGGAAGCAAAATTGCTATTGGATTTGATAGTGGTGATATATATCTTTGGTCTATTCCTGATATTTTAAATGCACAAAATCTCTCATCGATGGGCAATCAAAACCTACCTCTTCAGAGGCTTAACCTTGGATACAAGCTAGACAGGGTGTCTATAGTCTCTTTGCGATGGGTCAATAGTGACGGAAAGGCAGGGCGTTTGTATGTTAATGGATTCAGTGATCATGCATACCTATTTCAGGTCCTGATTCTGAACGAAGAGAGCGAATCACGAATTGTAAAGATGGTTTTGCCTCTCACAGAAGCCTGCCAAGGAATGGAACTTGTTTCAGGGCTTAGTGACCCAAATAAGCACAAACAAAGTGCTCTTGTTCTCTTGTTGAAATCTGGTCAAATTTGCTTATATGATGATTCAGAGATTGAGCGCTACCTTCTTCATGCTCAGTCAAGATCGCCACTAGCACTTCCAAACTATTCATCTGTGAAGCTACCTTATGGTGATCCAAGCATCACCGCTGCAAAGTTTTATACCAGTAGCCCTACAGCTGCGACTTCTTTGGATGAGGACTATTTTTCATCATTGGCCACCAAATACCCATGGTTCCTTTCAATGAAAGATAAACATCAGACTTCCACAGGTTCTGCCGACATTCATAAGACCAGAAATCTCTATGTAACTGGACATCTTGATGGAACCATAAGGTTTTGGGATGCATCATGTCCTCTTTTACTGCAGAATTTAATGATAAAGCACCAGAATGAAGAGAATAGTCCAAGTGGCACCCCTATTACATCATTACAGTTTGATATGTCATCCAGCATTCTAATCTGTGGGGATAGGAGTGGAACGGTCCGTATAATCACATTCAGAAAGGACTCCAGCGATAACATATTCTCCTTTTTACATGCGAAGCAAGGGGAGAGCTATAATGTCAGATGTATAAAGCTTAAAGGCGCTGTAACCTCAATCTCTTTGATCTCGAACTCAAAGCGTGTTGCTGTTGGAACAGAAAAAGGGATTGTATCAGTTGTCAGCATTGAAGATGCATCGATCTTGTATCAAAAACAGCTTGAGTGTCGGGTATCTGGTGGAATCGCATCTTTGCAATTTGAAATGTACAGCCATAATGGCTACGACAAGGATCTTTTGCTAGTAGGAATGGAAGATTCAACTATATATATTCTTGAGGAAGAAACTGGAAAACTTTTGAATACCAACCCAGTTCAGACAAACAAACCCTCCCGAGCCCTATTGATGCAGACACTTGAATTATCACCAGATGATCCATCGTTGTCAGATACCCACGATACAGT ATCGAAAGAATCACTGTTATTGCTTTGCACTGAAAATGCAATCCGC TTATTTT CCTTGAGCCATGCAATTCAGGGAACAAAGAATATAATCAATA AGAAGAAACCAAATGGTAGTTGCTGTTTTGCATCTCTTATCCACAGTGTTTCTTCTGAAATTGGACTTCTACTTGTCTTC TCCAATGGCAAAATAGAGATAAGATCCCTCCCAGATTTATCTATATTGAAGGAAGCCTCTTTAAGAGGTTTTTCATATACA AGAAACTTGAATTCTTCTAGCTCCATAGCATGTTCATCTGATGGAGAAATCATCTTGGTTAATGGAGAGGAGACATTTTTTTTCTCTACTCTCTGTCAGAATGACATCTACAGGCATGTAGACAGCATTAATACAATATACAGAAAAGACAACTCGCTCAGGGAAGAATCTTCTTATGTAGTGAAGTCCCCCAGAGAAAAGAAAAAGGGCATATTCGGAATGATTATGAAAGATACTAAAGCAAGCAAGGGAAAACAGAGCGATGCAAATGGAGATGAACAATTTACTGCAACAACTTCCGAAGAGCTGTCTTCAATATTTTCATGTGCTAATTTTGCTCCAGTATCTGAGAAGAGGAACAGTTCAATAAAAGATGACGAGAACATTGAACTAGATATAGATGATATCAACATTGATGATAACCCGCAAAAGCAGAAAGGACCACACTTCCCAGGTCTAAGCAAACAGAAAATCAGCAAGGGATTCCAAAGCCTAAGAGAAAAGTTGAAGCCCAGGACAGAAGAAAAGGTGAATTCAGGG AATAGAAAACCTGAAGACGACACATCAGTCAGTCAAGTTGACCAGATAAAGATGAAATATGGATATGCAACAAATGATGACCCCA CTAGCCTACCAAAAATGATTGGGAACAAGCTGCAAGAGAATATAAAAAAGTTGGAGGGCATTAATATTCGCGCTGGAGATATGGCCAACGGTGCTCAATCCTTCTCGGCAATGGCAAAAGAACTG CTGCGAAACACAAAGAACGAGAAGGCCACATCGTAGAAATGGCACATACATGTACCTTCCCCTC TCAGTTTTGAGTGTTCCTGTTCATTCAGTGCAGTTCTTCTACCGCATGAAATAATTCTGTTGTAAATAATGATTGAGAATCACAGCAAGAATTTACTGGTG ] [+] EMBL CF305042 [ AAGAACCAGATCGAGATTTGGGACATCGACACAAAGAAGTTGTGTTATGTGCATCCGTTCGAGAAGGAAATCACGGCATTTTCCGTTCTGCAGAATAGCTTCTACATCTATGTGGGTGATAGTTTTGGGAATGTGTCCCTGTTGAAGCTTGACTTGGGTCAGACATGTCTAGTTGACATGCCATATTGGATTCCTTTCTCTGAATCTTATGGTTCTGGAGCAAATGTTGGTAATGAGGTTGAAGTTGCATTTGTATCGCCACAGCCTTTGGCTGAAAATAACAGAGTGCTCATTATCTTCAGAGATGGGATTATGTCTTTGTGGGATATTAAGACGAGCAAAGTGGTATCTTTATCCGGCAAATCTATGCAACAACAGTCACATCAGGAGGCTAAAGCTGTAACATCGGCATGCTGGGCTTGTGCCAAGGGAAGCAAAATTGCTATTGGATTTGATAGTGGTGATATATATCTTTGGTCTATTCCTGATATTTTAAATGCACAAAATCTCTCATCGATGGGCAATCAAAACCTACCTCTTCAGAGGCTTAACCTTGGATACAAGCTAGACAGGGT ] [+] EMBL CF303455 [ GGGACATCGACACAAAGAAGTTGTGTTATGTGCATCCGTTCGAGAAGGAAAT ACGGCATTTTCCGTTCTGCTTAATACCTTCTACATCTATGTGGGTGATAGT ] [+] EMBL AK111615 [ AGGCAGGGCGTTTGTATGTTAATGGATTCAGTGATCATGCATACCTATTTCAGGTCCTGATTCTGAACGAAGAGAGCGAATCACGAATTGTAAAGATGGTTTTGCCTCTCACAGAAGCCTGCCAAGGAATGGAACTTGTTTCAGGGCTTAGTGACCCAAATAAGCACAAACAAAGTGCTCTTGTTCTCTTGTTGAAATCTGGTCAAATTTGCTTATATGATGATTCAGAGATTGAGCGCTACCTTCTTCATGCTCAGTCAAGATCGCCACTAGCACTTCCAAACTATTCATCTGTGAAGCTACCTTATGGTGATCCAAGCATCACCGCTGCAAAGTTTTATACCAGTAGCCCTACAGCTGCGACTTCTTTGGATGAGGACTATTTTTCATCATTGGCCACCAAATACCCATGGTTCCTTTCAATGAAAGATAAACATCAGACTTCCACAGGTTCTGCCGACATTCATAAGACCAGAAATCTCTATGTAACTGGACATCTTGATGGAACCATAAGGTTTTGGGATGCATCATGTCCTCTTTTACTGCAGAATTTAATGATAAAGCACCAGAATGAAGAGAATAGTCCAAGTGGCACCCCTATTACATCATTACAGTTTGATATGTCATCCAGCATTCTAATCTGTGGGGATAGGAGTGGAACGGTCCGTATAATCACATTCAGAAAGGACTCCAGCGATAACATATTCTCCTTTTTACATGCGAAGCAAGGGGAGAGCTATAATGTCAGATGTATAAAGCTTAAAGGCGCTGTAACCTCAATCTCTTTGATCTCGAACTCAAAGCGTGTTGCTGTTGGAACAGAAAAAGGGATTGTATCAGTTGTCAGCATTGAAGATGCATCGATCTTGTATCAAAAACAGCTTGAGTGTCGGGTATCTGGTGGAATCGCATCTTTGCAATTTGAAATGTACAGCCATAATGGCTACGACAAGGATCTTTTGCTAGTAGGAATGGAAGATTCAACTATATATATTCTTGAGGAAGAAACTGGAAAACTTTTGAATACCAACCCAGTTCAGACAAACAAACCCTCCCGAGCCCTATTGATGCAGACACTTGAATTATCACCAGATGATCCATCGTTGTCAGATACCCACGATACAGT ATCGAAAGAATCACTGTTATTGCTTTGCACTGAAAATGCAATCCGC TTATTTT CCTTGAGCCATGCAATTCAGGGAACAAAGAATATAATCAATA AGAAGAAACCAAATGGTAGTTGCTGTTTTGCATCTCTTATCCACAGTGTTTCTTCTGAAATTGGACTTCTACTTGTCTTC TCCAATGGCAAAATAGAGATAAGATCCCTCCCAGATTTATCTATATTGAAGGAAGCCTCTTTAAGAGGTTTTTCATATACA AGAAACTTGAATTCTTCTAGCTCCATAGCATGTTCATCTGATGGAGAAATCATCTTGGTTAATGGAGAGGAGACATTTTTTTTCTCTACTCTCTGTCAGAATGACATCTACAGGCATGTAGACAGCATTAATACAATATACAGAAAAGACAACTCGCCCAGGGAAGAATCTTCTTATGTAGTG TGTCCCCCAGAGAAAAGAAAAAGGGCATATTCGGAATGATTATGAAAGATACTAAAGCAAGCAAGGGAAAACAGAGCGATGCAAATGGAGATGAACAATTTACTGCAACAACTTCCGAAGAGCTGTCTTCAATATTTTCATGTGCTAATTTTGCTCCAGTATCTGAGAAGAGGAACAGTTCAATAAAAGATGACGAGAACATTGAACTAGATATAGATGATATCAACATTGATGATAACCCGCAAAAGCAGAAAGGACCACACTTCCCAGGTCTAAGCAAACAGAAAATCAGCAAGGGATTCCAAAGCCTAAGAGAAAAGTTGAAGCCCAGGACAGAAGAAAAGGTGAATTCAGGG AATAGAAAACCTGAAGACGACACATCAGTCAGTCAAGTTGACCAGATAAAGATGAAATATGGATATGCAACAAATGATGACCCCA CTAGCCTACCAAAAATGATTGGGAACAAGCTGCAAGAGAATATAAAAAAGTTGGAGGGCATTAATATTCGCGCTGGAGATATGGCCAACGGTGCTCAATCCTTCTCGGCAATGGCAAAAGAACTG CTGCGAAACACAAAGAACGAGGAGGCCACATCGTAGAAATGGCACATACATGTACCTTCCCCTC TCAGTTTTGAGTGTTCCTGTTCATTCAGTGCAGTTCTTCTACCGCATGAAATAATTCTGTTGTAAATAATGATTGAGAATCACAGCAAGAATTTACTGGTGAATTTCTTTCCCAGATGCGTTGGTAGCATGTATAGTACCACTTGATAGTCATCATAAATGAACTG ] [+] EMBL BI811937 [ TGATCCATCGGTGTCAGATACCCCGGATACAGTGATCGAAAGAATCACTGTTATTGCTTTGCACTGAAAATGC ATCCGCGTTATTTT CCTTGAGCCATGC ATTCAGGGAAC AAGAATATAATCGATAGAGAAGAAACCAAGTGGTAGTTGCTGTTTTGCATCTCTTATCCACAGTGTTTCTTCTGAAATTGGACTTCTACTTGTCTTCGTCCAGTGGCAAAATAGAGATAAGATCCCTCCCAGATTTATCTATATTGAAGGAAGCCTCTTTAAGAGGTTTTTCATATAC AGAAACTTGAATTCTTCTAGCTCCATAGCATGTTCATCTGATGGAGAAATCATCTTGGTTAATGGAGAGGAGACATTTTTTTTCTCTACTCTCTGTCAGAATGACATCTACAGGCATGTAGACAGCATTAATACAATATACAGAAAAGAC ACTCGCCCAGGGAAGAATCTTCTTATGTAGTGAAGTCCCCCAaaa ] [+] EMBL BI813447 [ GATACCCCCGATACAGT ATCGAAAGAATCACTGTTATTGCTTTGCACTGAAAAATCAATCCGC TTATTTTCCCTTGA CCATCCAATTCA GGAAC AAGAATATAATCCATA AGAAGAAACCAAATGGTA TTGCT TTTTGCATCTCTTATCCACAGTGTTTCTTCTGAAATTGGACTTCTACTTGTCTTC TCC ATGGCCAAATAGAGATAAGATCCCTCCCAGATTTATCTATATTGAAGGAAGCCTCTTTAAGAGGTTTTTCATATACACAGAAACTTGAATTCTTCTAGCTCCATAGCATGTTCATCTGATGGAGAAATCATCTTGGTTAATGGAGAGGAGACATTTTTTTTCTCTACTCTCTGTCAGAATGACATCTACAGGCATGTAGACAGCATTAATACAATATACAGAAAAGACAACTCGCCCAGGGAAGAATCTTCTTATGTAGTGAAGTCCCCCAaaa ] [+] EMBL BI813426 [ TTCAGGGTAATAGAAAACCTGAAGACGACACATCAGTCAGTCAAGTTGACCAGATAAAGATGAAATATGGATATGCAACCAATGATGACCCCATCTAGCCTACCCAAAATGATTGGGAACAAGCTGCAAGAGAATAT AAAAAGTTGGAGGGCATTAATATTCGCGCTGGAGATATGGCCAATGGTGCTCAATCCTTCTC GCAAT GC AAAGAACTGTCTGCGAAACAC AAGAACGAGAAGGCCACATCGTAGAAATGGCACATACATGTACCTTCCCCTCTGTTCAGTTTTGAGTGTTCCTGTTCATTCAGTGCAGTTCTTCTACCACATGAAATAATTCTGTTGTAAATAATGATTGAGAATCACAGCAAGAATTTACTGGTGAATTTCTTTCCCAGATGCGTTGGTAGCATGTATAGTACCACTTGATAGTCATCATAAATGAACTGTTTTTCTGTTAAGAAAAGAAAAA] consensusID : consensus_11494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [TAGGAGTACTCAGTCTCAGACAGTGCGCAGCATTAGGAGGGAGAAGCAGAAGAAGAGAAGCCCCTACCAACCTAATCCTTGACTGCTCTCCAGGCACAAACGCATCCATTGCCACCTCTCGTTTTCTTCCTCTCTCTCACGGACCCTGCGTTGGTCGGTTTCGTTCTTGGTTTCCCCGAGCCTGTTCCGTCCTGATTCCTGAACAAGAGGTTGGCAACTGCGAGAGAAGTTGTTGCCGGAGTGTTGGTTCGTCTGTCCGTGGATTCTTTGGTTGGTGTTCTTCGTCTGGTGGTGGTGGTGGTGGGTGGGATCGGCCATGTTCGTCAGGAAGCTTGTGGAGAAGGCCTCCAAGAAGGTAACTGAATCTCTCACTCTCCTCTCCGAGTCCTCTCTGCTTTGGCACTCCCTCGATCGGTTTCCAATTTGCCTCTTGATTTCTGGTTAAAGATGAACTCTTGCAGTTCTTGNTTGATGCCGTGCAGTAGCAGTATCAACTACAATCTGACAAAAAAATTTCAGAGCAT] [+] EMBL CA763855 [TAGGAGTACTCAGTCTCAGACAGTGCGCAGCATTAGGAGGGAGAAGCAGAAGAAGAGAAGCCCCTACCAACCTAATCCTTGACTGCTCTCCAGGCACAAACGCATCCATTGCCACCTCTCGTTTTCTTCCTCTCTCTCACGGACCCTGCGTTGGTCGGTTTCGTTCTTGGTTTCCCCGAGCCTGTTCCGTCCTGATTCCTGAACAAGAGGTTGGCAACTGCGAGAGAAGTTGTTGCCGGAGTGTTGGTTCGTCTGTCCGTGGATTCTTTGGTTGGTGTTCTTCGTCTGGTGGTGGTGGTGGTGGGTGGGATCGGCCATGTTCGTCAGGAAGCTTGTGGAGAAGGCCTCCAAGAAGGTAACTGAATCTCTCACTCTCCTCTCCGAGTCCTCTCTGCTTTGGCACTCCCTCGATCGGTTTCCAATTTGCCTCTTGATTTCTGGTTAAAGATGAACTCTTGCAGTTCTTGNTTGATGCCGTGCAGTAGCAGTATCAACTACAATCTGACAAAAAAATTTCAGAGCAT] consensusID : consensus_11494#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [TTGGTGAACCCCTCGTACCTAGCCCTANCCCACTAGAAATTGACTTGGGGAAACCACACGCCTCGCCACACGAGGAATTACTATGACANAAAGCTTGGACGGGCATTAATATTCGCGCTGGAGATATGGCCCAATGGTGCTCAATCCTTCTCGGCAATGGCAAAAGAACTGCTGCGAAACACCACAAGAACCGAGAAGGCCACATTCGTAGAAATGGCACCATACACTGTACCTTCCCCTCTTTCAGTTTTGAGTGTTCCTGTTCATTCAGTGCAGTTCTTCTACCACATGAAATAATTCTGTTGTAAATAATGATTGAGAATCACAGCCAAGCAATTTACTGGTGAATTTCTTTCCAAAAAAAA] [+] EMBL BQ909170 [TTGGTGAACCCCTCGTACCTAGCCCTANCCCACTAGAAATTGACTTGGGGAAACCACACGCCTCGCCACACGAGGAATTACTATGACANAAAGCTTGGACGGGCATTAATATTCGCGCTGGAGATATGGCCCAATGGTGCTCAATCCTTCTCGGCAATGGCAAAAGAACTGCTGCGAAACACCACAAGAACCGAGAAGGCCACATTCGTAGAAATGGCACCATACACTGTACCTTCCCCTCTTTCAGTTTTGAGTGTTCCTGTTCATTCAGTGCAGTTCTTCTACCACATGAAATAATTCTGTTGTAAATAATGATTGAGAATCACAGCCAAGCAATTTACTGGTGAATTTCTTTCCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11494#0 AGGAGTACTCAGTCTCAGACAGTGTGCAGCATTAGGAGGGAGAAGCAGAAGAAGAGAAGC 60 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CCCTACCAACCTAATCCTTGACTGCTCTCCAGGCACAAACGCTTCCATTGCCACCTCTCG 120 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TTTTCTTCCTCTCTCTCACGGACCCTGTGTTGGTCGGTTTCGTTCTTGGTTTCCTCGAGC 180 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CTGTTCCGTCCTGATTCCTGAACAAGAGGTTGGCAACTGCGAGAGAAGTTGTTGCCGGAG 240 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TGTTGGTTCGTCTGTCCGTGGATTCTTTGGTTGGTGTTCTTCGTCTGGTGGTGGTGGTGG 300 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TGGTGGATCGGCCATGTTCGTCAGGAAGCTTGTGGAGAAGGCCTCCAAGAAGCATCGCAT 360 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CGGAGGTATCAGCGGCCTCCGCGCCGAGGACGTGAGCCCGCGGCTGGCGTTCCACTACGG 420 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CGTCCCCGCCGACGCCGCGCTCCTCGCCTACGACCCCGCCCTCCACGTCCTCGCCGTCGC 480 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CACCAGGAATGGGCAGATCAAGCTGTTCGGCCGCGACAACACGCAGGCGCTGCTCCAATC 540 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CCCGTCCCCCGTCCCCTCCAAGTTCCTGCGGTTTGCCGAGGGGCAAAGGGTTCTCCTGAA 600 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CGTGAACGCCAAGAACCAGATCGAGATTTGGGACATCGACACAAAGAAGTTGTGTTATGT 660 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 GCATCCGTTCGAGAAGGAAATCACGGCATTTTCCGTTCTGCAGAATAGCTTCTACATCTA 720 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TGTGGGTGATAGTTTTGGGAATGTGTCCCTGTTGAAGCTTGACTTGGGTCAGACATGTCT 780 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 AGTTGACATGCCATATTGGATTCCTTTCTCTGAATCTTATGGTTCTGGAGCAAATGTTGG 840 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TAATGAGGTTGAAGTTGCATTTGTATCGCCACAGCCTTTGGCTGAAAATAACAGAGTGCT 900 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CATTATCTTCAGAGATGGGATTATGTCTTTGTGGGATATTAAGACGAGCAAAGTGGTATC 960 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TTTATCCGGCAAATCTATGCAACAACAGTCACATCAGGAGGCTAAAGCTGTAACATCGGC 1020 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 ATGCTGGGCTTGTGCCAAGGGAAGCAAAATTGCTATTGGATTTGATAGTGGTGATATATA 1080 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TCTTTGGTCTATTCCTGATATTTTAAATGCACAAAATCTCTCATCGATGGGCAATCAAAA 1140 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CCTACCTCTTCAGAGGCTTAACCTTGGATACAAGCTAGACAGGGTGTCTATAGTCTCTTT 1200 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 GCGATGGGTCAATAGTGACGGAAAGGCAGGGCGTTTGTATGTTAATGGATTCAGTGATCA 1260 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TGCATACCTATTTCAGGTCCTGATTCTGAACGAAGAGAGCGAATCACGAATTGTAAAGAT 1320 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 GGTTTTGCCTCTCACAGAAGCCTGCCAAGGAATGGAACTTGTTTCAGGGCTTAGTGACCC 1380 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 AAATAAGCACAAACAAAGTGCTCTTGTTCTCTTGTTGAAATCTGGTCAAATTTGCTTATA 1440 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TGATGATTCAGAGATTGAGCGCTACCTTCTTCATGCTCAGTCAAGATCGCCACTAGCACT 1500 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TCCAAACTATTCATCTGTGAAGCTACCTTATGGTGATCCAAGCATCACCGCTGCAAAGTT 1560 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TTATACCAGTAGCCCTACAGCTGCGACTTCTTTGGATGAGGACTATTTTTCATCATTGGC 1620 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CACCAAATACCCATGGTTCCTTTCAATGAAAGATAAACATCAGACTTCCACAGGTTCTGC 1680 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CGACATTCATAAGACCAGAAATCTCTATGTAACTGGACATCTTGATGGAACCATAAGGTT 1740 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TTGGGATGCATCATGTCCTCTTTTACTGCAGAATTTAATGATAAAGCACCAGAATGAAGA 1800 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 GAATAGTCCAAGTGGCACCCCTATTACATCATTACAGTTTGATATGTCATCCAGCATTCT 1860 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 AATCTGTGGGGATAGGAGTGGAACGGTCCGTATAATCACATTCAGAAAGGACTCCAGCGA 1920 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TAACATATTCTCCTTTTTACATGCGAAGCAAGGGGAGAGCTATAATGTCAGATGTATAAA 1980 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 GCTTAAAGGCGCTGTAACCTCAATCTCTTTGATCTCGAACTCAAAGCGTGTTGCTGTTGG 2040 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 AACAGAAAAAGGGATTGTATCAGTTGTCAGCATTGAAGATGCATCGATCTTGTATCAAAA 2100 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 ACAGCTTGAGTGTCGGGTATCTGGTGGAATCGCATCTTTGCAATTTGAAATGTACAGCCA 2160 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TAATGGCTACGACAAGGATCTTTTGCTAGTAGGAATGGAAGATTCAACTATATATATTCT 2220 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TGAGGAAGAAACTGGAAAACTTTTGAATACCAACCCAGTTCAGACAAACAAACCCTCCCG 2280 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 AGCCCTATTGATGCAGACACTTGAATTATCACCAGATGATCCATCGTTGTCAGATACCCA 2340 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CGATACAGTATCGAAAGAATCACTGTTATTGCTTTGCACTGAAAATGCAATCCGCTTATT 2400 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TTCCTTGAGCCATGCAATTCAGGGAACAAAGAATATAATCAATAAGAAGAAACCAAATGG 2460 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TAGTTGCTGTTTTGCATCTCTTATCCACAGTGTTTCTTCTGAAATTGGACTTCTACTTGT 2520 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CTTCTCCAATGGCAAAATAGAGATAAGATCCCTCCCAGATTTATCTATATTGAAGGAAGC 2580 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CTCTTTAAGAGGTTTTTCATATACAAGAAACTTGAATTCTTCTAGCTCCATAGCATGTTC 2640 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 ATCTGATGGAGAAATCATCTTGGTTAATGGAGAGGAGACATTTTTTTTCTCTACTCTCTG 2700 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TCAGAATGACATCTACAGGCATGTAGACAGCATTAATACAATATACAGAAAAGACAACTC 2760 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 GCCCAGGGAAGAATCTTCTTATGTAGTGAAGTCCCCCAGAGAAAAGAAAAAGGGCATATT 2820 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 CGGAATGATTATGAAAGATACTAAAGCAAGCAAGGGAAAACAGAGCGATGCAAATGGAGA 2880 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TGAACAATTTACTGCAACAACTTCCGAAGAGCTGTCTTCAATATTTTCATGTGCTAATTT 2940 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TGCTCCAGTATCTGAGAAGAGGAACAGTTCAATAAAAGATGACGAGAACATTGAACTAGA 3000 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TATAGATGATATCAACATTGATGATAACCCGCAAAAGCAGAAAGGACCACACTTCCCAGG 3060 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 ------------------------------------------------------------ consensus_11494#0 TCTAAGCAAACAGAAAATCAGCAAGGGATTCCAAAGCCTAAGAGAAAAGTTGAAGCCCAG 3120 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 -TAGGAGTACTCAGTCTCAGACAGTGCGCAGCATTAGGAGGGAGAAGCAGAAGAAGAGAA 59 consensus_11494#0 GACAGAAGAAAAGGTGAATTCAGGGAATAGAAAACCTGAAGACGACACATCAGTCAGTCA 3180 consensus_11494#2 ------------------------------------------------------------ consensus_11494#1 GCCCCTACCAACCTAATCCTTGACTGCTCTCCAGGCACAAACGCATCCATTGCCACCTCT 119 consensus_11494#0 AGTTGACCAGATAAAGATGAAATATGGATATGCAACAAATGA-TGACCCCACTAGCCTAC 3239 consensus_11494#2 -------TTGGTGAACCCCTCGTACCTAGCCCTANCCCACTA-GAAATTGACTTGGGGAA 52 consensus_11494#1 CGTTTTCTTCCTCTCTCTCACGGACCCTGCGTTGGTCGGTTTCGTTCTTGGTTTCCCCGA 179 * * * consensus_11494#0 CAAA--AATGATTGG----GAACAAGCTGCAAG----AGAAT-ATAAAAAAG-TTGGA-G 3286 consensus_11494#2 ACCA--CACGCCTCG----CCACACGAGGAATT----ACTATGACANAAAGC-TTGGACG 101 consensus_11494#1 GCCTGTTCCGTCCTGATTCCTGAACAAGAGGTTGGCAACTGCGAGAGAAGTTGTTGCCGG 239 * * * * * * ** *** * consensus_11494#0 GGCATTAATATTCGCGCTGGAGATATGGCC-AACGGTGCTCAATCCTTCTCGGCAATGGC 3345 consensus_11494#2 GGCATTAATATTCGCGCTGGAGATATGGCCCAATGGTGCTCAATCCTTCTCGGCAATGGC 161 consensus_11494#1 AGTGTTGGTTCGTCTGTCCGTGGATTCTTTGGTTGGTGTTCTTCGTCTGGTGGTGGTGGT 299 * ** * * * * * **** ** * ** *** consensus_11494#0 AAAAGAACTGCT--GCGAAACAC---AAAGAAC-----GAGAAGGCCACAT-CGTAGAAA 3394 consensus_11494#2 AAAAGAACTGCT--GCGAAACACCACAAGAACC-----GAGAAGGCCACATTCGTAGAAA 214 consensus_11494#1 GGTGGGTGGGATCGGCCATGTTCGTCAGGAAGCTTGTGGAGAAGGCCTCCAAGAAGGTAA 359 * * * ** * * * * * ********* * * ** consensus_11494#0 TGGCAC-ATACA-TGTACCTTCCC--CTCT--CAGTTTTGAGTGTTCCT-GTTCA---TT 3444 consensus_11494#2 TGGCACCATACACTGTACCTTCCC--CTCTTTCAGTTTTGAGTGTTCCT-GTTCA---TT 268 consensus_11494#1 CTGAATCTCTCACTCTCCTCTCCGAGTCCTCTCTGCTTTGGCACTCCCTCGATCGGTTTC 419 * * ** * * * *** ** * * **** * *** * ** * consensus_11494#0 CAGTGCAGTTCTT--CTACCGCATGAAATAATTCTGTTGTAAATAATGATTGAGAATCAC 3502 consensus_11494#2 CAGTGCAGTTCTT--CTACCACATGAAATAATTCTGTTGTAAATAATGATTGAGAATCAC 326 consensus_11494#1 CAATTTGCCTCTTGATTTCTGGTTAAAGATGAACTCTTGCAGTTCTTGNTTGA---TGCC 476 ** * **** * * * ** ** *** * * ** **** * * consensus_11494#0 AGCAAG--AATTTACTGGTGAATTTCTTTCCCAGATGCGTTGGTAGCATGTATAGTACCA 3560 consensus_11494#2 AGCCAAGCAATTTACTGGTGAATTTCTTTCCAAAAAAAA--------------------- 365 consensus_11494#1 GTGCAGTAGCAGTATCAACTACAATCTGACAAAAAAATTTCAGAGCAT------------ 524 * ** * *** * * * consensus_11494#0 CTTGATAGTCATCATAAATGAACTGTTTTTCTGTTAAGAAAAGAAAAA 3608 consensus_11494#2 ------------------------------------------------ consensus_11494#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||