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Oryza sativa
cluster # 11503 cluster # 11503       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11503#0 length = 1433 sequences # 8  
consensus_11503#1 length = 235 sequences # 1  

consensusID : consensus_11503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1433
fasta sequence
                              [TAGGCGACGCCACACCTCTTGCATTTGTCTTTTTGGCGATTCCTTCGATCCTTACTTGATATAAACCAACCGAGCTGCCCGCCTGGTTCTTGCATTGCATGAGAAACGCCTAGAGATCTTCTAGCTAGCTCCACAAGATGATGAGTTAGACGACCTGGATTCGAAAGCTCACCCCTTCTATTTATTTGATATTAGATCATTCCCTAATATTTGCCCTTTTTTTTTCTTGCATTGCATGATTGAATGTCCAAGGTTGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA-GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG-AGCTTGTGGATCGTGCCCAAGCTCGC-TGATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCTGTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAGGTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAACACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTAAACAACAGCACACGTTGACTTAAAAATAACTTGCCTTTTCTCTTTTTAATTTTGGGCAGCTCTGCCAAAGAGTGCAAATTAGAAAAACGTAAACTTTTGTGTATCAAAGGATTTTTTGAAGCATGGAAAACCCGGGGGAACAGATGTTTATCAAAATTTACAGGAACTTTTGAGTTTTTTGACTTAGAGATTCGTTTTGTGTACAGAAAGGCATGTCGCCAATGTAATTTTGTGTGAATGGCTTTGTGCTGTGCAATTTTGGGAAGAAATTAAAGCATAAAAAGAAATGGGGGGGTATTCCAGGTTTCTCCCTGCCCAT]

[+] EMBL CB629842             [TAGGCGACGCCACACCTCTTGCATTTGTCTTTTTGGCGATTCCTTCGATCCTTACTTGATATAAACCAACCGAGCTGCCCGCCTGGTTCTTGCATTGCATGAGAAACGCCTAGAGATCTTCTAGCTAGCTCCACAAGATGATGAGTTAGACGACCTGGATTCGAAAGCTCACCCCTTCTATTTATTTGATATTAGATCATTCCCTAATATTTGCCCTTTTTTTTTCTTGCATTGCATGATTGAATGTCCAAGGTTGCGGCCTATGCTCGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCC ATCACCAGCGACCACCGCTAGGTGaggctgttg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK071874             [                                                                                                                                                                                                                                                              TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTGCCCAAGCTCGC TGATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCTGTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAGGTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAACACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTG                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU172472             [                                                                                                                                                                                                                                                              TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGNTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGAGGGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AB096013             [                                                                                                                                                                                                                                                              TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTGCCCAAGCTCGC TGATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCTGTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAGGTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU172662             [                                                                                                                                                                                                                                                              TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGGAAGCTTGTGGATCGTGCCCAAGCTCGCTTGATCACGATCAAGAAGGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU182561             [                                                                                                                                                                                                                                                              TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGNTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTGCCCAAGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU172473             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAACACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTAAACAACAGCACACGTTGACTTAAAAA                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB629841             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCCATCCATCCAAATCGTCCAATTATTGTCATAGTGTGAAGAATATTTGTGTGCCACCCCTTTCAAGCAGCACATTTGCAACCCTGTACAGAAAATTGAGGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCCCAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTTTTGAAAGAAAGATGGAAAAGTGTGTTTTTTGGTGGAATTTGGGAGTTATTTTAACCCATCGTAAACAACAGCCCACGTTGACTTAAATTTAACTTGCCTTTTCTCTTTTTAATTTTGGGCAGCTCTGCCAAAGAGTGCAAATTAGAAAAACGTAAACTTTTGTGTATCAAAGGATTTTTTGAAGCATGGAAAACCCGGGGGAACAGATGTTTATCAAAATTTACAGGAACTTTTGAGTTTTTTGACTTAGAGATTCGTTTTGTGTACAGAAAGGCATGTCGCCAATGTAATTTTGTGTGAATGGCTTTGTGCTGTGCAATTTTGGGAAGAAATTAAAGCATAAAAAGAAATGGGGGGGTATTCCAGGTTTCTCCCTGCCCAT]


>consensus_11503#0 TAGGCGACGCCACACCTCTTGCATTTGTCTTTTTGGCGATTCCTTCGATCCTTACTTGAT ATAAACCAACCGAGCTGCCCGCCTGGTTCTTGCATTGCATGAGAAACGCCTAGAGATCTT CTAGCTAGCTCCACAAGATGATGAGTTAGACGACCTGGATTCGAAAGCTCACCCCTTCTA TTTATTTGATATTAGATCATTCCCTAATATTTGCCCTTTTTTTTTCTTGCATTGCATGAT TGAATGTCCAAGGTTGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCG ACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCC GGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTT CTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGAGGGGATGTTGCCCTTCATGAAATT GCCGGGAATGTGGTGAGGCTGAAGCTTCAAGGAGCTTGTGGATCGTGCCCAAGCTCGCTG ATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCT GTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAG GTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTC ATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACT GTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAA TTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAAC ACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGA GTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCT AGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTGTTTCT TGGTGGAATTCTGGAGTTATTTTAACCCATCGTAAACAACAGCACACGTTGACTTAAAAA TAACTTGCCTTTTCTCTTTTTAATTTTGGGCAGCTCTGCCAAAGAGTGCAAATTAGAAAA ACGTAAACTTTTGTGTATCAAAGGATTTTTTGAAGCATGGAAAACCCGGGGGAACAGATG TTTATCAAAATTTACAGGAACTTTTGAGTTTTTTGACTTAGAGATTCGTTTTGTGTACAG AAAGGCATGTCGCCAATGTAATTTTGTGTGAATGGCTTTGTGCTGTGCAATTTTGGGAAG AAATTAAAGCATAAAAAGAAATGGGGGGGTATTCCAGGTTTCTCCCTGCCCAT



consensusID : consensus_11503#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 235
fasta sequence
                              [GTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCANAAGCCTCACNAANAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCANATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAANAAANATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTNAACNAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU182562             [GTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCANAAGCCTCACNAANAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCANATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAANAAANATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTNAACNAAAAAAAAAAAAAAAAAAAA]


>consensus_11503#1 GTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCANAAGCCTCACNAANAGTT GCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCANATACTATCTGTCTAGA TCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAANAAANATGGAAAAGTGTGTTTCTTGG TGGAATTCTGGAGTTATTTTAACCCATCGTNAACNAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11503#0      TAGGCGACGCCACACCTCTTGCATTTGTCTTTTTGGCGATTCCTTCGATCCTTACTTGAT 60
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      ATAAACCAACCGAGCTGCCCGCCTGGTTCTTGCATTGCATGAGAAACGCCTAGAGATCTT 120
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      CTAGCTAGCTCCACAAGATGATGAGTTAGACGACCTGGATTCGAAAGCTCACCCCTTCTA 180
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      TTTATTTGATATTAGATCATTCCCTAATATTTGCCCTTTTTTTTTCTTGCATTGCATGAT 240
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      TGAATGTCCAAGGTTGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCG 300
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      ACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCC 360
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      GGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTT 420
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      CTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGAGGGGATGTTGCCCTTCATGAAATT 480
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      GCCGGGAATGTGGTGAGGCTGAAGCTTCAAGGAGCTTGTGGATCGTGCCCAAGCTCGCTG 540
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      ATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCT 600
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      GTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAG 660
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      GTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTC 720
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      ATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACT 780
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      GTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAA 840
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      TTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAAC 900
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      ACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGA 960
consensus_11503#1      ---GTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCANAAGCCTCACNAANA 57
                          ****************************************** ********* ** *

consensus_11503#0      GTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCT 1020
consensus_11503#1      GTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCANATACTATCTGTCT 117
                       ********************************************** *************

consensus_11503#0      AGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTGTTTCT 1080
consensus_11503#1      AGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAANAAANATGGAAAAGTGTGTTTCT 177
                       ************************************* *** ******************

consensus_11503#0      TGGTGGAATTCTGGAGTTATTTTAACCCATCGTAAACAACAGCACACGTTGACTTAAAAA 1140
consensus_11503#1      TGGTGGAATTCTGGAGTTATTTTAACCCATCGTNAACNAAAAAAAAAAAAAAAAAAAA-- 235
                       ********************************* *** * *  * *     *   ***  

consensus_11503#0      TAACTTGCCTTTTCTCTTTTTAATTTTGGGCAGCTCTGCCAAAGAGTGCAAATTAGAAAA 1200
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      ACGTAAACTTTTGTGTATCAAAGGATTTTTTGAAGCATGGAAAACCCGGGGGAACAGATG 1260
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      TTTATCAAAATTTACAGGAACTTTTGAGTTTTTTGACTTAGAGATTCGTTTTGTGTACAG 1320
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      AAAGGCATGTCGCCAATGTAATTTTGTGTGAATGGCTTTGTGCTGTGCAATTTTGGGAAG 1380
consensus_11503#1      ------------------------------------------------------------
                                                                                   

consensus_11503#0      AAATTAAAGCATAAAAAGAAATGGGGGGGTATTCCAGGTTTCTCCCTGCCCAT 1433
consensus_11503#1      -----------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)