These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 3792 fasta sequence [CCTTGGCATCTGATCCTATTCCCCTCTCCGCGCACGTCGGGTTTCCCCCCCGTGGACAACGCAACCGACCGACCAAGCTGCGGACAGCGCCGTCTCTGCTGTCTCTCTCTGTATGCTTCCCTTCCTCCTCAAGCTGGGCCTCGGTGGTCGGTGGTTAGGTGAAGGTAAACCACCGGCTTTCTCACGCGCCTTTCTTTCTGTTCATTTCCTTGGGGTTTAATTCTTGGTTGCCAGCGAGCCCGGTAGGCAGTAGTCCACCCACCGGCAGGTTCTTGCTCCTCCTCCTCAGCCGCTGCCGGATTTGAGATGAGATGAGATGAGGAGGCGCTGGGGGTGCCTCTCCTCCCTGTGCCGCCCTCGCCGGGGTGGACGCGCGGCGGCGGCCCCGCTCCCGCAGCCAGATCCACCGCGTCTCGAGTCCAAGGAAGTAGAGGAGCACGGCGCTTCCGATAAAGTTGTCATGGAGAACATTCTGTCAAACAATGATTTTTCGGAAGGTCTACATTTGTGGCATCCTAATGGTTGCCATGGATTTGTGGCTGTTGAAGGATCAGGTTATCATCATGGAATAAGGCCTCACTCAGGGTCAAATTATGCCGTACTTACTCGTCGCACACATAATTGGCAAGGGCTTGAGCAGGACATAACAGAAAAGGTCACTGTTGGTACTGAGTACATTGTTGCTGCCCATGTCAGAGTCCATGGTGAACTCAATGAGCCTGTTGGAATTCAGGCCACTCTAAAACTTGAGGGCGATGGTTCTTCTACGAACTATCAATCAGTTGCAAGGATCTCAGCATCAAAAGACTGTTGGGAGAAGTTGGAAGGTTCATTTGAACTAAAAACTCTACCAAGACGTTTGGTATTCTACATTGAAGGCCCCCCTCCTGGTGTAGACTTGCTCATAGATTCAGTCACCATCTCCTACAAGAAAACAGAGCGGGCTGCATCCAAACTGGTTAGTGGAACAGAAAACATCATTTCAAATTATGATTTTTCGGAAGGCCTTCATTTGTGGAACCCTATCTGCTGTCATGCATATGTGGCATCTCAATGGTCTGGTTTCCTTGATGGTATTAGAGGGAGCTCAGGAGAAAATTATGCTGTAGTTTCGAAGAGAACTGAAAGCTGGCAAGGTCTTGAACAAGATATTACAGATAAAGTATCTGCTGGTACTGCTTATGCAGTATCAGCCTATGTTAGAGTTGATGGGAATATCCATACGAAAGTTGAAGTTAAAGCAACCTTGAGGTTGCATAACACAGATGATTCAACGCACTACAGTCCAGTTGGAAGCCTGTTAGCTTCAAAAGAAAAGTGGGAGAAGATGGAAGGATCCTTTTGCTTGACAAATATGCCAAAACGTGTAGTATTCTACCTGGAAGGACCTCCTGCTGGCGTGGACCTTATCATTGATTCCGTAAATGTAACTTGCTCTGGATATCAGCAGTTAAAAGAAGTAAAAGTACCAAGTGGAGTTGATACCATCGTTAAGAATCCTCACTTTGACGAAGGGTTAAACAATTGGTCTGGAAGAGGATGCAATATCTGTAGGCATGAGCTTACTGCTTATGGAAATGTCAAGCCTCTAAATGGCAGCTATTTTGCTTCAGCCACTGGACGGGTCCACAATTGGAACGGTATCCAGCAAGATATCACTGGCAGGGTACAGAGAAAAGTTCTTTATGAGATAAGTTCTGCTGTCCGCATATTTGGGAGTGCCAATGATACAGAAGTCTGCGTTACTCTGTGGGTACAAGAATATGGCCGTGAGCGATATGTAAGCCTTGCAAAGAACCCGGCATCTGATAAGCAATGGACACATCTAAAAGGAAAGTTCCTCCTCCATGCCCCG-TTTTC-AAAAGCTGTTA-TTTTCGTAGAGGGGCCACCTGCAGGCATTGATATTCTTGTTGATGGCCTTGTCCTATCTCCAGCAAGAAAACTCCATGCTGCACCCCGCCCAAGAATTGAGAATGTTTCATATGGAGCTAATGTAATACATAACAGTGCTTTCAGTCATGGGCTTTCTGGGTGGAGTCCCATGGGGTCATGTCGATTGAGTATCCATACTGAATCACCCCATATGCTTTCTGCCATCTTGAAGGACCCCTCAGCTAAGCAACATATAAGAGGTTCTTATATTCTTGCCACAAACCGCACTGATGTGTGGATGGGCCCTTCCCAGTTGATAACTGACAAGCTTAGGCTGCACACCACTTACAGAGTTTCTGCTTGGGTACGTGCTGGGTCTGGAGGACATGGACGTTACCATGTAAATGTTTGTCTTGCTGTAGATCATCAGTGGGTTAATGGTGGGCAAGTAGAAGCTGATGGCGATCAATGGTATGAACTCAAAGGAGCATTCAAGCTTGAAAAGAAGCCATCCAAAGTTACTGCATATGTTCAGGGACCGCCTCCAGGTGTTGATCTCAGAGTTATGGGGTTCCAAATTTATGCTGTTGATAGAAAAGCACGTTTTGAATATCTGAAGGAGAAAACTGACAAGGTAAGGAAGCGTGATGTCATCCTGAAGTTCCAGGGATCAGATGCTGCAAACCTTTTTGGTTCATCTATCAAGATACAACAGACCGAGAACAGTTTTCCATTTGGATCATGCATAGGGAGAAGTAACATTGAGAATGAGGATCTTGCTGATTTCTTCATGAA-GAACTTTAATTGGGCTGTATTTGAAAATGAACTGAAGTGGTACTGGACAGAGGCTGAACAAGGGAGACTAAATTATAAAGATTCTGATGAGTTGCTTGAATTTTGCCGGAAACATAACATTCAAGTTCGTGGTCACTGCTTATTCTGGGAAGTAGAAGATTCAGTCCAGCCATGGATTCGATCATTACATGGTCACCACCTGATGGCTGCTATACAGAATCGTTTGCAAAGTCTGTTGTCAAGGTACAAAGGTCAGTTTAAACATCATGATGTAAACAACGAGATGCTTCATGGGTCTTTCTACCAAGATAGACTGGGAAATGATATTAGAGCTCACATGTTTAGGGAAGCACATAAACTTGACCCTTCAGCAGTACTCTTTGTGAACGACTACAATGTTGAAGATCGATGCGACTCAAAATCTACACCAGAAAAATTAATTGAACAGATTGTTGATCTCCAAGAAAGGGGTGCTCCAGTTGGTGGGATTGGCTTGCAAGGTCATATCACGCATCCAGTGGGTGACATCATCTGCGATTCCCTGGACAAGCTCTCCATACTGGGTCTCCCTATCTGGATCACCGAATTGGATGTCACGGCTGAGAATGAACACATCCGAGCCGATGATCTGGAGGTGTACCTTCGCGAAGCCTTTGCGCATCCTTCCGTGGAGGGGATTATCCTTTGGGGATTCTGGGAGCTGTTCATGTTCCGAGAACACGCTCACCTGGTTGATGTTGATGGAACGAT--CAA-TG-AGGC-TGGCAAAAG-G-TA-CA-TTGC--AC-TG-AAGC--AAGAG-TGGCTAA--CCAGCATTAC-TGGC-AACGTGGATCACCATGGAGA-GTTGAA-G-TTCAGAGGCTA-CCATGGGTCATACACGGTAGAAGTAGCAACGCCTTCAGGAAAGGTAACCAGATCGTTTGTTGTTGACAAGGATA-ACGCTGTTCAGGTGGTTACCCTGAACA-T-TTAGCTTGTGAGATATGTTCTTATGGAGAGTGAGGTATATATATACTGCGACATGTCTTTTTGGATGATTAGAGTTTACTGTTTTCTGTCAACAATTTACCATGTATACGAACTGCTGAAATTGCTGTCATGCCACTTATTAATGCCATACTCACATTTACCTTTAAAAAAAAA] [+] EMBL AK100891 [CCTTGGCATCTGATCCTATTCCCCTCTCCGCGCACGTCGGGTTTCCCCCCCGTGGACAACGCAACCGACCGACCAAGCTGCGGACAGCGCCGTCTCTGCTGTCTCTCTCTGTATGCTTCCCTTCCTCCTCAAGCTGGGCCTCGGTGGTCGGTGGTTAGGTGAAGGTAAACCACCGGCTTTCTCACGCGCCTTTCTTTCTGTTCATTTCCTTGGGGTTTAATTCTTGGTTGCCAGCGAGCCCGGTAGGCAGTAGTCCACCCACCGGCAGGTTCTTGCTCCTCCTCCTCAGCCGCTGCCGGATTTGAGATGAGATGAGATGAGGAGGCGCTGGGGGTGCCTCTCCTCCCTGTGCCGCCCTCGCCGGGGTGGACGCGCGGCGGCGGCCCCGCTCCCGCAGCCAGATCCACCGCGTCTCGAGTCCAAGGAAGTAGAGGAGCACGGCGCTTCCGATAAAGTTGTCATGGAGAACATTCTGTCAAACAATGATTTTTCGGAAGGTCTACATTTGTGGCATCCTAATGGTTGCCATGGATTTGTGGCTGTTGAAGGATCAGGTTATCATCATGGAATAAGGCCTCACTCAGGGTCAAATTATGCCGTACTTACTCGTCGCACACATAATTGGCAAGGGCTTGAGCAGGACATAACAGAAAAGGTCACTGTTGGTACTGAGTACATTGTTGCTGCCCATGTCAGAGTCCATGGTGAACTCAATGAGCCTGTTGGAATTCAGGCCACTCTAAAACTTGAGGGCGATGGTTCTTCTACGAACTATCAATCAGTTGCAAGGATCTCAGCATCAAAAGACTGTTGGGAGAAGTTGGAAGGTTCATTTGAACTAAAAACTCTACCAAGACGTTTGGTATTCTACATTGAAGGCCCCCCTCCTGGTGTAGACTTGCTCATAGATTCAGTCACCATCTCCTACAAGAAAACAGAGCGGGCTGCATCCAAACTGGTTAGTGGAACAGAAAACATCATTTCAAATTATGATTTTTCGGAAGGCCTTCATTTGTGGAACCCTATCTGCTGTCATGCATATGTGGCATCTCAATGGTCTGGTTTCCTTGATGGTATTAGAGGGAGCTCAGGAGAAAATTATGCTGTAGTTTCGAAGAGAACTGAAAGCTGGCAAGGTCTTGAACAAGATATTACAGATAAAGTATCTGCTGGTACTGCTTATGCAGTATCAGCCTATGTTAGAGTTGATGGGAATATCCATACGAAAGTTGAAGTTAAAGCAACCTTGAGGTTGCATAACACAGATGATTCAACGCACTACAGTCCAGTTGGAAGCCTGTTAGCTTCAAAAGAAAAGTGGGAGAAGATGGAAGGATCCTTTTGCTTGACAAATATGCCAAAACGTGTAGTATTCTACCTGGAAGGACCTCCTGCTGGCGTGGACCTTATCATTGATTCCGTAAATGTAACTTGCTCTGGATATCAGCAGTTAAAAGAAGTAAAAGTACCAAGTGGAGTTGATACCATCGTTAAGAATCCTCACTTTGACGAAGGGTTAAACAATTGGTCTGGAAGAGGATGCAATATCTGTAGGCATGAGCTTACTGCTTATGGAAATGTCAAGCCTCTAAATGGCAGCTATTTTGCTTCAGCCACTGGACGGGTCCACAATTGGAACGGTATCCAGCAAGATATCACTGGCAGGGTACAGAGAAAAGTTCTTTATGAGATAAGTTCTGCTGTCCGCATATTTGGGAGTGCCAATGATACAGAAGTCTGCGTTACTCTGTGGGTACAAGAATATGGCCGTGAGCGATATGTAAGCCTTGCAAAGAACCCGGCATCTGATAAGCAATGGACACATCTAAAAGGAAAGTTCCTCCTCCATGCCCCG TTTTC AAAAGCTGTTA TTTTCGTAGAGGGGCCACCTGCAGGCATTGATATTCTTGTTGATGGCCTTGTCCTATCTCCAGCAAGAAAACTCCATGCTGCACCCCGCCCAAGAATTGAGAATGTTTCATATGGAGCTAATGTAATACATAACAGTGCTTTCAGTCATGGGCTTTCTGGGTGGAGTCCCATGGGGTCATGTCGATTGAGTATCCATACTGAATCACCCCATATGCTTTCTGCCATCTTGAAGGACCCCTCAGCTAAGCAACATATAAGAGGTTCTTATATTCTTGCCACAAACCGCACTGATGTGTGGATGGGCCCTTCCCAGTTGATAACTGACAAGCTTAGGCTGCACACCACTTACAGAGTTTCTGCTTGGGTACGTGCTGGGTCTGGAGGACATGGACGTTACCATGTAAATGTTTGTCTTGCTGTAGATCATCAGTGGGTTAATGGTGGGCAAGTAGAAGCTGATGGCGATCAATGGTATGAACTCAAAGGAGCATTCAAGCTTGAAAAGAAGCCATCCAAAGTTACTGCATATGTTCAGGGACCGCCTCCAGGTGTTGATCTCAGAGTTATGGGGTTCCAAATTTATGCTGTTGATAGAAAAGCACGTTTTGAATATCTGAAGGAGAAAACTGACAAGGTAAGGAAGCGTGATGTCATCCTGAAGTTCCAGGGATCAGATGCTGCAAACCTTTTTGGTTCATCTATCAAGATACAACAGACCGAGAACAGTTTTCCATTTGGATCATGCATAGGGAGAAGTAACATTGAGAATGAGGATCTTGCTGATTTCTTCATGAA GAACTTTAATTGGGCTGTATTTGAAAATGAACTGAAGTGGTACTGGACAGAGGCTGAACAAGGGAGACTAAATTATAAAGATTCTGATGAGTTGCTTGAATTTTGCCGGAAACATAACATTCAAGTTCGTGGTCACTGCTTATTCTGGGAAGTAGAAGATTCAGTCCAGCCATGGATTCGATCATTACATGGTCACCACCTGATGGCTGCTATACAGAATCGTTTGCAAAGTCTGTTGTCAAGGTACAAAGGTCAGTTTAAACATCATGATGTAAACAACGAGATGCTTCATGGGTCTTTCTACCAAGATAGACTGGGAAATGATATTAGAGCTCACATGTTTAGGGAAGCACATAAACTTGACCCTTCAGCAGTACTCTTTGTGAACGACTACAATGTTGAAGATCGATGCGACTCAAAATCTACACCAGAAAAATTAATTGAACAGATTGTTGATCTCCAAGAAAGGGGTGCTCCAGTTGGTGGGATTGGCTTGCAAGGTCATATCACGCATCCAGTGGGTGACATCATCTGCGATTCCCTGGACAAGCTCTCCATACTGGGTCTCCCTATCTGGATCACCGAATTGGATGTCACGGCTGAGAATGAACACATCCGAGCCGATGATCTGGAGGTGTACCTTCGCGAAGCCTTTGCGCATCCTTCCGTGGAGGGGATTATCCTTTGGGGATTCTGGGAGCTGTTCATGTTCCGAGAACACGCTCACCTGGTTGATGTTGATGGAACGAT CAA TG AGGC TGGCAAAAG G TA CA TTGC AC TG AAGC AAGAG TGGCTAA CCAGCATTAC TGGC AACGTGGATCACCATGGAGA GTTGAA G TTCAGAGGCTA CCATGGGTCATACACGGTAGAAGTAGCAACGCCTTCAGGAAAGGTAACCAGATCGTTTGTTGTTGACAAGGATA ACGCTGTTCAGGTGGTTACCCTGAACA T TTAGCTTGTGAGATATGTTCTTATGGAGAGTGAGGTATATATATACTGCGACATGTCTTTTTGGATGATTAGAGTTTACTGTTTTCTGTCAACAATTTACCATGTATACGAACTGCTGAAATTGCTGTCATGCCACTTATTAATGCCATACTCAC ] [+] EMBL CF324814 [ TTATGGAAATGTCAAGCCTCTAAATGGCAGCTATTTTGCTTCAGCCACTGGACGGGTCCACAATTGGAACGGTATCCAGCAAGATATCACTGGCAGGGTACAGAGAAAAGTTCTTTATGAGATAAGTTCTGCTGTCCGCATATTTGGGAGTGCCAATGATACAGAAGTCCGCGTTACTCTGTGGGTACAAGAATATGGCCGTGAGCGATATGTAAGCCTTGCAAAGAACCCGGCATCTGATAAGCAATGGACACATCTAAAAGGAAAGTTCCTCCTCCATGCCCCG TTTTC AAAAGCTGTTA TTTTCGTAGAGGGGCCACCTGCAGGCATTGATATTCTTGTTGATGGCCTTGTCCTATCTCCAGCAAGAAAACTCCATGCTGCACCCCGCCCAAGAATTGAGAATGTTTCATATGGAGCTAATGTAATACATAACAGTGCTTTCAGTCATGGGCTTTCTGGGTGGAGTCCCATGGGGTCATGTCGATTGAGTATCCATACTGAATCACCCCA ] [+] EMBL OSS4091A [ TCTGCTGTCCGCATATTTGGGAGTGCCAATAATACAGAAGTCTGCGTTACTCTGTGGGTACAAGAATATGGCCGTGAGCGATATGTAAGCCTTGCAAAGAACCCGGCATCTGATAAGCAATGGACACATCTAAAAGGAAAGTTCCTCCTCCATGCCCCGNTTTTCAAAAAGCTGTTATTTTTCGTAGAGGGGg ] [+] EMBL CB668829 [ CTGGGTGGAGTACCATGGGGTCATGTCGATTGAGTATCCATACTGAATCACCCCATATGCAATCTGCCATCTTGAAGGACCCCTCACCTAAGCAACATATAAAAGGTTCTTATATTCTTGCCACAAACCGCACTGATGTGTGGATGGGCCCTTCCCAGTTGATAACTGACAAGCTTACGCTGCACACCACTTACAGAGTTTCTGCTTGGGTACCTGCTGGGTCTGGAAGACATGGACGTCACCATGTAAATGTTTGACTTGCTGTAGATCATCACTGGGTTAATGGTGGGCAAGTACAAACTGATGGCGATCAATGGTATGAACTCAAACGAGCATTCAAGCTTGAAAAGAATCCATCCAAAGTCACTGCATATGTTCAG ] [+] EMBL OSS10461A [ ATGGCGATCAATGGTATGAACTCAAAGGAGCATTTAAGCTTGAAAAGAAGCCATCCAAAGTTACTGCATATGTTCAGGGACCGCCTCCAGGTGTTGATCTCAGAGTTATGGGGTTCCAAATTTATGCTGTTGATAGAAAAGCACGTTTTGAATATCTGAAGGAGAAAACTGACAAGGTAAGGAAGCGTGATGTCATCCTGAAGTTCCAGGGATCAGATGCTGCAAACCTTTTTGGTTCATCTATCAAGATACAACAGACCGAGAACAGTTTTCCATTTGGNTCATGCATAGGGAGAAGTAACATTGAGAATNAGGATCTTGCTGATTTCTTCATGAA GGACTTTAATTG ] [+] EMBL OSS10460A [ ATGGCGATCAATGGTATGAACTCAAAGGAGCATTCAAGCTTGAAAAGAAGCCATCCAAAGTTACTGCATATGTTCAGGGACCGCCTCCAGGTGTTGATCTCAGAGTTATGGGGTTCCAAATTTATGCTGTTGATAGAAAAGCACGTTTTGAATATCTGAAGGAGAAAACTGACAAGGTAAGGAAGCGTGATGTCATCCTGAAGTTCCAGGGATCAGATGCTGCAAACCTTTTTGGTTCATCTATCAAGATACAACAGACCGAGAACAGTTTTCCATTTGGTTCATGCATAGGGAGAAGTAACATTGAGAATGAGGATCTTGCTGATTTCTTCATGAANGAACTTTAATTGGGCTGTATTTGAAAATGAACTGAAGTGGTACTGGACAGAGGCTG ACANGG ] [+] EMBL AA750176 [ GATTCTGATGAGTTGCTTGAATTTTGCCGGAAACATAACATTCAAGTTCGTGGTCACTGCTTA TCTGGGAAGTAGAAGATTCAGTCCAGCCATGGATTCGATCATTACATGGTCACCACCTGATGGCTGCTATACAGAATC ] [+] EMBL AU101994 [ CGATTCCAATTGAAGGCTTGGCAAAAGTGTTACCATTTGCCAACTTGAAAGCCAAAGAGTTGGCTAANCCCAGCATTACTTGGCAAACGTGGATCACCATGGAGA GTTGAA GTTTCAGAGGCTA CCATGGGTCATACACGGTAGAAGTAGCAACGCCTTCAGGAAAGGTAACCAGATCGTTTGTTGTTGACAAGGATA ACGCTGTTCAGGTGGTTACCCTGAACA T TTAGCTTGTGAGATATGTTCTTATGGAGAGTGAGGTATATATATACTGCGACATGTCTTTTTGGATGATTAGAGTTTACTGTTTTCTGTCAACAATTTACCATGTATACGAACTGCTGAAATTGCTGTCATGCCACTTATTAATGCCATACTCACATTTACCTTTAAAAA ] [+] EMBL BI809503 [ ATGGACAGGTTGAACG TTCAGAGGCTACCCATGGGTCATAC CGGTAGAAGTAGCAACGCCTTCAGGAAAGGTAACCAGATC TTTGTTG TGACAAGGATATACGCTGTTCAGGTGGTTACCCTGAACACTGTTAGCTTGTGAGATATGTTCTTATGGAGAGTGAGGTATATATATACTGCGACATGTCTTTTTGGATGATTAGAGTTTACTGTTTTCTGTCAACAATATACCATGTATACGAATTGCTGAAATTGCTGTCGTGCCACTTATTAATGCCATACTCACATTTACCTTTAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||