These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1228 fasta sequence [GGCGGGCGACGATCCCGGCGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGAGGCCGCAGTACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGGGCGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGTCAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAACCTTGATGTTCTCTGCGACTATGCCAACTTGGATTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGACCTTGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAGGAGCATGCAAAAGGTGGTAAATGCATTGTATTTACACAAACAAAAAGAGATGCTGATCGATTGTCCTACACCATGGGTCGGAGTTTCCAGTGCCAGGCCCTTCATGGGGACATCACACAAGCCCAAAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTGCCACTGATGTTGCTGCTCGTGGTTTGGATATCCCAAATGTAGACTTGGTGATACATTTTGAATTGCNCAACTCCTCGGAATTGTTTGTTCACAGGTCTGGCCGAACTGGCCGTGCTGGAAAGAAGGGTAAGGCAATTGTTATGCACAG] [+] EMBL CB638609 [GGCGGGCGACGATCCCGGCGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGAAGCCGCANTACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGG ] [+] EMBL CB638579 [GGCGGGCGACGATCCCGGCGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGAGGCCGCAGTACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGGGCGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAACCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCA CAATGCAAGG ] [+] EMBL CB627521 [GGCGGGCGACGATCCCGGCGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGAGGCCGCAGTACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGGGCGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGCATCTGTCAGAGGTCCGGTTTG ] [+] EMBL CB655010 [ GGGGCCCTTCTACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGGGCGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGTCAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAACCTTGATGTTCTCTGCGACTATGCCAACTTGGATTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGA ] [+] EMBL CB636631 [ GGCGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTGTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGTCAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAACCTTGATGT ] [+] EMBL CB662146 [ AGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATACTGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGTCAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAACCTTGATGTTCTCTGCGACTATGCCAACTTGGATTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGACCTTGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAGGAGCATGCAAAAGGTGGTAAATGCATTGTATTTACACAAACAAAAAGAGATGCTGATCGATTGTCCTACACCATGGGTCGGAGTTTCCAGTGCCAGGCCCTTCATGGGGACATCACANCAGCCCAAAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTGCCACTG ] [+] EMBL CB629521 [ CGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTGTTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCAATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCAATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAGGTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGTCAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAACCTTGATGTTCTCTGCGACTATGCCAACTTGGATTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGACCTTGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAGGAGCATGCAAAAGGTGGTAAATGCATTGTATTTACACAAACAAAAAGAGATGCTGATCGATTGTCCTACACCATGGGTCGGAGTTTCCAGTGCCAGGCCCTTCATGGGGACATCACACAAGCCCAAAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTGCCACTGATGTTGCTGCTCGTGGTTTGGATATCCCAAATGTAGACTTGGTGATACATTTTGAATTGCNCAACTC ] [+] EMBL AU225408 [ AAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAGGAGCATGCAAAAGGTGGTAAATGCATTGTATTTACACAAACAAAAAGAGATGCTGATCGATTGTCCTACACCATGGGTCGGAGTTTCCAGTGCCAGGCCCTTCATGGGGACATCACACAAGCCCAAAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTGCCACTGATGTTGCTGCTCGTGGTTTGGATATCCCAAATGTAGACTTGGTGATACATTTTGAATTGCCAAACTCCTCGGAATTGTTTGTTCACAGGTCTGGCCGAACTGGCCGTGCTGGAAAGAAGGGTAAGGCAATTGTTATGCACAG] consensusID : consensus_11534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence [GGCGGGCGACGATCCCGGAGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGACGCCGCACCACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAAACGGGGGCGAAAGAAGTTGGAGCTGCTGCGGGCGGCACGGAGGATGAGTTGGA] [+] EMBL CB664210 [GGCGGGCGACGATCCCGGAGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGGAGACGGGGGCCGCGGGGGCGGCGGCGACGCCGCACCACGCGGCGGATGAGGGGTTGTTCTACGAGGAGGATAAAACGGGGGCGAAAGAAGTTGGAGCTGCTGCGGGCGGCACGGAGGATGAGTTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11534#0 GGCGGGCGACGATCCCGGCGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGG 60 consensus_11534#1 GGCGGGCGACGATCCCGGAGGCGTGGTTCCACTCCTCCCCGGCGTGGCTGGGGTTCCGGG 60 ****************** ***************************************** consensus_11534#0 AGACGGGGGCCGCGGGGGCGGCGGCGAGGCCGCAGTACGCGGCGGATGAGGGGTTGTTCT 120 consensus_11534#1 AGACGGGGGCCGCGGGGGCGGCGGCGACGCCGCACCACGCGGCGGATGAGGGGTTGTTCT 120 *************************** ****** ************************ consensus_11534#0 ACGAGGAGGATAAGAGGGGGGCGAAGGCGGGTGGAGTTGCTGCGGGCGGCGCGGAGGAGG 180 consensus_11534#1 ACGAGGAGGATAAAACGGGGGCGAAAGAAGTTGGAGCTGCTGCGGGCGGCACGGAGGATG 180 ************* * ********* * * ***** ************* ******* * consensus_11534#0 GGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCG 240 consensus_11534#1 AGTTGGA----------------------------------------------------- 187 ****** consensus_11534#0 GCATAACCAAGCTGTTCCCAATCCAGAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGG 300 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 ACATGGTTGGTCGTGCCAAAACAGGTACAGGAAAGACTTTGGCTTTTGGAATCCCCATAC 360 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 TGGACGCAATTATTCGGCACAATGAAAAGAATAGCCCTGGTAAATTTCCCTTGGCTATTG 420 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 TTTTGGCCCCAACAAGAGAACTCGCGAAACAAGTTGAGAGGGAATTTTCTGATTCTTCCA 480 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 ATGTGGAAACGATCTGTGTATATGGTGGAACTCCAATTAGCCAGCAAATAAGACAACTCA 540 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 ATTATGGAGTTGATGTTGTTATTGGGACACCAGGACGAGTAATTGACCTGCTTAAAAGAG 600 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 GTGCTCTGAATCTGTCAGAGGTCCGGTTTGTTGTTCTTGATGAAGCAGACCAGATGTTGT 660 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 CAGTGGGTTTTGATGAAGATGTTGAGACAATTTTGGATAGAGTACCTCCAAAACGTCAAA 720 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 CCTTGATGTTCTCTGCGACTATGCCAACTTGGATTCAGAGACTCACCCAGAAATACCTTA 780 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 AGAATCCTGTTACAATTGACCTTGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCA 840 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 GTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTA 900 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 AGGAGCATGCAAAAGGTGGTAAATGCATTGTATTTACACAAACAAAAAGAGATGCTGATC 960 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 GATTGTCCTACACCATGGGTCGGAGTTTCCAGTGCCAGGCCCTTCATGGGGACATCACAC 1020 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 AAGCCCAAAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTG 1080 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 CCACTGATGTTGCTGCTCGTGGTTTGGATATCCCAAATGTAGACTTGGTGATACATTTTG 1140 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 AATTGCNCAACTCCTCGGAATTGTTTGTTCACAGGTCTGGCCGAACTGGCCGTGCTGGAA 1200 consensus_11534#1 ------------------------------------------------------------ consensus_11534#0 AGAAGGGTAAGGCAATTGTTATGCACAG 1228 consensus_11534#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||