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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1115 fasta sequence
[TAAATGACAGGGTTACCCTTAAAAGTTACAACACAAATTATACAAATTATTCGATCTAACAATGTCAGAAATGGTCATACATGATAGAAGTTCTTTTTTTGGCTATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATGCTCAACTGCAAACACCGAAGCTAAGTATATATTGGATCCTACGATAGCACACCGTTAGCTCCAATAATATTGTTACAACGACTTTTGCTAACAATTTACACCGAAGGAAATCAGCGTAGGAGTACATCAGCACAAGGACACCTAAGATTCACCAACCTGAATCGTATGCAGCTCTGCTGCTCTTTGTTTTCATTGATGCCCCTCCGTCTTCGGCGGTATGCTGCGGACGTTCTTGAGGAGGTCGTGAATCTTGGAGAGCATGGGCGTCTGCGATGAATCGCCGGCGCCGCTGCCGCTCGCCTGCATGGGCCTCTGGGTCTCCTGGTACTTTATTTTCTCGAAGAGGAACTGCTTCTCTGCTTCAGCTTCCTCCAGGCGGCGCTTCAGGTATAGGCTGGCGTAGTCCTGCTCGGCCCTCTCAGATTTGGCAAGCGCGATGCTCTGGAGCCTGTCAGCCTCCTGACGGGCCTCGTTTGCCTTCAGCTGGAACATCTCGGCCTCGGCCTGCTTCAACCGGACAATGCTCTCTAGCTCATCCACCTGCTGCTTCTTGCGCAGCCTCTCGGCCTTCAGCTCCTGAAGCTCTCTGGCCTTCTCGTCAAGCTCCCGGTCACAGGCCTCCACAGCAATGCGAGCCTTTTTGTAGAGTCGCATTTTCTCTTCAGCAACAAGCTCCATCTTTTTAACGGCTTCATGGACAACCTCTGCAATACGATTACAGGCCTCCTGAGGAGTGATCAAGCGCCCTATTTCTTCATTTTCTGTGCTCTTGGGGGAATCCAACTCGAGCTCTTGGAGCACCTGCAGTATCATCCGAGGATTGATAGCATCCGCGGGGCTATTCCGTAACCTTTCAATCAGATCTGCACATTTCCTGAACAACTTCCTCCCTTTTGAGTCTTCACTTAAACGGAATATCTTGCAGACAAACTCAAGCTGACGTAACAAAGCATCCCTGTCCCAACCAGGAG]
[+] EMBL CB660276 [TAAATGACAGGGTTACCCTTAAAAGTTACAACACAAATTATACAAATTATTCGATC CCCAATGTCAGAAATGGTCATACATGATAGAAGTTCTTTTTTTGGCTATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATGCTCAACTGCAAACACCGAAGCTAAGTATATATTGGATCCTACGATAGCACACCGTTAGCTCCAATAATATTGTTACAACGACTTTTGCTAACAATTTACACCGAAGGAAATCAGCGTAGGAGTACATCAGCACAAGGACACCTAAGATTCACCAACCTGAATCGTATGCAGCTCTGCTGCTCTTTGTTTTCATTGATGCCCCTCCGTCTTCGGCGGTATGCTGCGGACGTTCTTGAGGAGGTCGTGAATCTTGGAGAGCATGGGCGTCTGCGATGAATCGCCGGCGCCGCTGCCGCTCGCCTGCATGGGCCTCTGGGTCTCCTGGTACTTTATTTTCTCGAAGAGGAACTGCTTCTCTGCTTCAGCTTCCTCCAGGCGGCGCTTCAGGTATAGGCTGGCGTAGTCCTGCTCGGCCCTCTCAGATTTGGCAAGCGCGATGCTCTGGAGCCTGTCAGCCTCCTGACGGGCCTCGTTTGCCTTCAGCTGGAACATCTCGGCCTCGGCCTGCTTCAACCGGACAATGCTCTCTAGCTCATCCACCTGCTGCTTCTTGCGCAGCCTCTCGGCCTTCAGCTCCTGAAGCTCTCTGGCCTTCTCGTCAAGCTCCCGGTCACAGGCCTCCACAGCAATGCGAGCCTTTTTGTAGAGTCGCA ]
[+] EMBL CB628405 [ ATTCGATCTAACAATGTCAGAAATGGCCATACATGATAGAAGTTCTTTTTTTGGCTATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATGCTCAACTGCAAACACCGAAGCTAAGTATATATTGGATCCTACGATGGCACACCGTTAGCTCCAATAATATTGTTACAACGACTTTTGCTAACAATTTACACCGAAGGAAATCAGCGTAGGAGTACATCAGCACAAGGACACCTAAGATTCACCAACCTGAATCGTATACAGCTCTGCTGCTCTTTGTTTTCATTGATGCCCCTCCGTCTTCGGCGGTATGCTGCGGACGTTCTTGAGGAGGTCGTGAATCTTGGAGAGCATGGGCGTCTGCGATGAATCGCCGGCGCCGCTGCCGCTCGCCTGCATGGGCCTCTGGGTCTCCTGGTACTTTATTTTCTCGAAGAGGAACTGCTTCTCTGCTTCAGCTTCCTCCAGGCGGCGCTTCAGGTATAGGCTGGCGTAGTCCTGCTCGGCCCTCTCAGATTTGGCAAGCGCGATGCTCTGGAGCCTGTCAGCCTCCTGACGGGCCTCGTTTGCCTTCAGCTGGAACATCTCGGCCTCGGCCTGCTTCAACCGGACAATGCTCTCTAGCTCATCCACCTGCTGCTTCTTGCGCAGCCTCTCGGCCTTCAGCTCCTGAAGCTCTCTGGCCTTCTCGTCAAGCTCCCGGTCACAGGCCTCCACAGCAATGCGAGCCTTTTTGTAGAGTCGCA ]
[+] EMBL CB638786 [ ATTCGATCTAACAATGTCAGAAATGGTCATACATGATAGAAGTTCTTTTTTTGGCTATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATGCTCAACTGCAAACACCGAAGCTAAGTATATATTGGATCCTACGATAGCACACCGTTAGCTCCAATAATATTGTTACAACGACTTTTGCTAACAATTTACACCGAAGGAAATCAGCGTAGGAGTACATCAGCACAAGGACACCTAAGATTCACCAACCTGAATCGTATGCAGCTCTGCTGCTCTTTGTTTTCATTGATGCCCCTCCGTCTTCGGCGGTATGCTGCGGACGTTCTTGAGGAGGTCGTGAATCTTGGAGAGCATGGGCGTCTGCGATGAATCGCCGGCGCCGCTGCCGCTCGCCTGCATGGGCCTCTGGGTCTCCTGGTACTTTATTTTCTCGAAGAGGAACTGCTTCTCTGCTTCAGCTTCCTCCAGGCGGCGCTTCAAGTATAAGCTGGCGTAGTCCTGCTCGGCCCTCTCAGATTTGGCAAGCGCGATGCTCTGGAGCCTGTCAACCTCCTGACGGGCCTCGTTTGCCTTCAGCTGGAACATCTCGGC ]
[-] EMBL BF430753 [ GCTCAACTGCAAACACCGAAGCTAAGTATATATGGGATCCTACGATGGCACACCGTTAGCTCCAATAATATTGTT CAACGACTTTTGCTAACAATTTACACCGAAGGAAATCAGCGTAGGAGTACATCAGCACAAGGACACCTAAGATTCACCAACCTGAATCGTATGCAGCTCTGCTGCTCTTTGTTTTCATTGATGCCCCTCCGTCTTCGGCGGTATGCTGCGGACGTTCTTGAGGAGGTCGTGAATCTTGGAGAGCATGGGCGTCTGCGATGAATCGCCGGCGCCGCTGCCGCTCGCCTGCATGGGCCTCTGGGTCTCCTGGTACTTTATTTTCTCGAAGAGGAACTGCTTCTCTGCTTCAGCTTCCTCCAGGCGGCGCTTCAGGTATAGGCTGGCGTAGTCCTGCTCGGCCCTCTCAGATTTGGCAAGCGCGATGCTCTGGAGCCTGTCAGCCTCCTGACGGGCCTCGTTTGCCTTCAGCTGGAACATCTCGGCCTCGGCCTGCTTCAACCGGACAATGCTCTCTAGCTCATCCACCTGCTGCTTCTTGCGCAGCCTCTCGGCCTTCAGCTCCTGAAGCTCTCTGGCCTTCTCGTCAAGCTCCCGGTCACAGGCCTCCACAGCAATGCGAGCCTTTTTGTAGAGTCGCATTTTCTCTTCAGCAACAAGCTCCATCTTT ]
[-] EMBL CB660275 [ CCTCCGTCTTCGGCGGTATGCTGCGGACGTTCTTGAGGAGGTCGTGAATCTTGGAGAGCATGGGCGTCTGCGATGAATCGCCGGCGCCGCTGCCGCTCGCCTGCATGGGCCTCTGGGTCTCCTGGTACTTTATTTTCTCGAAGAGGAACTGCTTCTCTGCTTCAGCTTCCTCCAGGCGGCGCTTCAGGTATAGGCTGGCGTAGTCCTGCTCGGCCCTCTCAGATTTGGCAAGCGCGATGCTCTGGAGCCTGTCAGCCTCCTGACGGGCCTCGTTTGCCTTCAGCTGGAACATCTCGGCCTCGGCCTGCTTCAACCGGACAATGCTCTCTAGCTCATCCACCTGCTGCTTCTTGCGCAGCCTCTCGGCCTTCAGCTCCTGAAGCTCTCTGGCCTTCTCGTCAAGCTCCCGGTCACAGGCCTCCACAGCAATGCGAGCCTTTTTGTAGAGTCGCATTTTCTCTTCAGCAACAAGCTCCATCTTTTTAACGGCTTCATGGACAACCTCTGCAATACGATTACAGGCCTCCTGAGGAGTGATCAAGCGCCCTATTTCTTCATTTTCTGTGCTCTTGGGGGAATCCAACTCGAGCTCTTGGAGCACCTGCAGTATCATCCGAGGATTGATAGCATCCGCGGGGCTATTCCGTAACCTTTCAATCAGATCTGCACATTTCCTGAACAACTTCCTCCCTTTTGAGTCTTCACTTAAACGGAATATCTTGCAGACAAACTCAAGCTGACGTAACAAAGCATCCCTGTCCCAACCAGGAG]
[+] EMBL AW069946 [ ggcaGGTACTTTATTTTCTCGAAGAGGAACTGCTTCTCTGCTTCAGCTTCCTCCAGGCGGCGCTTCAGGTATAGGCTGGCGTAGTCCTGCTCGGCCCTCTCAGATTTGGCAAGCGCGATGCTCTGGAGCCTGTCAGCCTCCTGACGGGCCTCGTTTGCCTTC ]
consensusID : consensus_11537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 321 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAAATGGTCATACATGATAGAAGTTCTTTTTTTGGCTATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATGCTCAACTGCAAACACCGAAGCT-AAGTATATATTGGATCCTACGATGGCACACCGTTAGCTCCAATAATATTGTTACAACGACTTTTGCTAACAATTTACACCGAAGGAAATCAGCGTAGGAGTACATCAGCACAAGGACACCTAAGATTCACCAACCTGAATCGTATGCAGCTCTGCTGCTCTTTGTTTTCAT]
[-] EMBL CA756614 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAAATGGTCATACATGATAGAAGTTCTTTTTTTGGCTATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATGCTCAACTGCAAACACCGAAGCT AAGTATATATTGGATCCTACGATGGCACACCGTTAGCTCCAATAATATTGTTACAACGACTTTTGCTAACAATTTACACCGAAGGAAATCAGCGTAGGAGTACATCAGCACAAGGACACCTAAGATTCACCAACCTGAATCGTATGCAGCTCTGCTGCTCTTTGTTTTCAT]
[-] EMBL BI810479 [ agtaATTTCTCATCCATGCTCAATGGAAAAAACCGAAGCTAAAGTATATA TGGATCCTACGATGGCACACCGTTAGCTCCAATAATATTGTTACAACGACTTTTGCTAACAATTTACACCGAAGcgg ]
consensusID : consensus_11537#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[ACCAAATTATTCGATCTATCATGTATGACCCATTTCTGACATTGTTAGATCGAATAATTGTATCAATTGTGTTGTAACTTCTGTAAATGGTCATACATGATAGAAGTTCTTTTTTGGCTATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATGTCAATGAAACACCGAAGCTAAGTATATATTGGATCCTACGATGGCACACCGTTAGCTCCAATAATATGTTACAACGACTTTGCTAACAATTTACACCGAAGCGG]
[-] EMBL BI810365 [ACCAAATTATTCGATCTATCATGTATGACCCATTTCTGACATTGTTAGATCGAATAATTGTATCAATTGTGTTGTAACTTCTGTAAATGGTCATACATGATAGAAGTTCTTTTTTGGCTATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATGTCAATGAAACACCGAAGCTAAGTATATATTGGATCCTACGATGGCACACCGTTAGCTCCAATAATATGTTACAACGACTTTGCTAACAATTTACACCGAAGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11537#0 ----------------TAAATGACAGGGTTACCCTTAAAAGTTACAACACAAATTATACA 44
consensus_11537#1 --------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTT 28
consensus_11537#2 ACCAAATTATTCGATCTATCATGTATGACCCATTTCTGACATTGTTAGATCGAATAATTG 60
* ** *
consensus_11537#0 AATTATTCGATCTAACAATGTCAGAAATGGTCATACATGATAGAAGTTCTTTTTTTGGCT 104
consensus_11537#1 TTTTTTTTTTTTTTTTTTTTTCAGAAATGGTCATACATGATAGAAGTTCTTTTTTTGGCT 88
consensus_11537#2 TATCAATTGTGTTGTAACTTCTGTAAATGGTCATACATGATAGAAGTTCTTTTTT-GGCT 119
* * * * ******************************* ****
consensus_11537#0 ATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATGCTCAACTGCAAACACCGAAG 164
consensus_11537#1 ATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATGCTCAACTGCAAACACCGAAG 148
consensus_11537#2 ATTACAGAGTACAGGGTGCTTCAGCTATTTCTCATCCATG-TCAATG--AAACACCGAAG 176
**************************************** **** ***********
consensus_11537#0 CTAAGTATATATTGGATCCTACGATAGCACACCGTTAGCTCCAATAATATTGTTACAACG 224
consensus_11537#1 CTAAGTATATATTGGATCCTACGATGGCACACCGTTAGCTCCAATAATATTGTTACAACG 208
consensus_11537#2 CTAAGTATATATTGGATCCTACGATGGCACACCGTTAGCTCCAATAATAT-GTTACAACG 235
************************* ************************ *********
consensus_11537#0 ACTTTTGCTAACAATTTACACCGAAGGAAATCAGCGTAGGAGTACATCAGCACAAGGACA 284
consensus_11537#1 ACTTTTGCTAACAATTTACACCGAAGGAAATCAGCGTAGGAGTACATCAGCACAAGGACA 268
consensus_11537#2 ACTTT-GCTAACAATTTACACCGAAGCGG------------------------------- 263
***** ********************
consensus_11537#0 CCTAAGATTCACCAACCTGAATCGTATGCAGCTCTGCTGCTCTTTGTTTTCATTGATGCC 344
consensus_11537#1 CCTAAGATTCACCAACCTGAATCGTATGCAGCTCTGCTGCTCTTTGTTTTCAT------- 321
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 CCTCCGTCTTCGGCGGTATGCTGCGGACGTTCTTGAGGAGGTCGTGAATCTTGGAGAGCA 404
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 TGGGCGTCTGCGATGAATCGCCGGCGCCGCTGCCGCTCGCCTGCATGGGCCTCTGGGTCT 464
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 CCTGGTACTTTATTTTCTCGAAGAGGAACTGCTTCTCTGCTTCAGCTTCCTCCAGGCGGC 524
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 GCTTCAGGTATAGGCTGGCGTAGTCCTGCTCGGCCCTCTCAGATTTGGCAAGCGCGATGC 584
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 TCTGGAGCCTGTCAGCCTCCTGACGGGCCTCGTTTGCCTTCAGCTGGAACATCTCGGCCT 644
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 CGGCCTGCTTCAACCGGACAATGCTCTCTAGCTCATCCACCTGCTGCTTCTTGCGCAGCC 704
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 TCTCGGCCTTCAGCTCCTGAAGCTCTCTGGCCTTCTCGTCAAGCTCCCGGTCACAGGCCT 764
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 CCACAGCAATGCGAGCCTTTTTGTAGAGTCGCATTTTCTCTTCAGCAACAAGCTCCATCT 824
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 TTTTAACGGCTTCATGGACAACCTCTGCAATACGATTACAGGCCTCCTGAGGAGTGATCA 884
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 AGCGCCCTATTTCTTCATTTTCTGTGCTCTTGGGGGAATCCAACTCGAGCTCTTGGAGCA 944
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 CCTGCAGTATCATCCGAGGATTGATAGCATCCGCGGGGCTATTCCGTAACCTTTCAATCA 1004
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 GATCTGCACATTTCCTGAACAACTTCCTCCCTTTTGAGTCTTCACTTAAACGGAATATCT 1064
consensus_11537#1 ------------------------------------------------------------
consensus_11537#2 ------------------------------------------------------------
consensus_11537#0 TGCAGACAAACTCAAGCTGACGTAACAAAGCATCCCTGTCCCAACCAGGAG 1115
consensus_11537#1 ---------------------------------------------------
consensus_11537#2 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||