These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 637 fasta sequence [CGAGCTCGTCAATTGGCASGGAGC-AAG-AGGAGAGAG-CTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCT-GCCTCGA-GTTCAGCAAGGTC-GGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTTAGGCAGGTGCAGCTTATCAGCTTCATCGCCTACNNGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGNNTCGTNNNNNNNNNNATCTCTGNNNNNNTGATGTC] [+] EMBL BE229525 [CGAGCTCGTCAATTGGCASGGAGC AAG AGGAGAGAGCCTTGGTGAGCTGCAGAGATGG CCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGBTCACCGTGGRGGACCTCCTGAAGCAGATCGAGTACCTTCTCCGTTCCAAGTGGGTGCCCTCGCTGCGAMGTTCAGCAAGGTCGGGWTTYGTCTACCGTGA ] [+] EMBL CF196829 [ cGAGCAAAGAAGGAGAGAG CTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCT GCCTCGA GTTCAGCAAGGTC GGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTTAGGCAGGTGCAGCTTATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGANNAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGNNTCGTNNNNNNNNNNATCTCTGNNNNNNTGATGTC] [+] EMBL CF196587 [ GGAGAGAG CTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCT GCCTCGA GTTCAGCAAGGTC GGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGNCNACGTTAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACNNNNCCCCGGGCTGNNNNNNNNCTGGTNGCAACNNNGCCGTCA ] [+] EMBL CF196077 [ ACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCT GCCTCGA GTTCAGCAAGGTC GGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTTNNNCAGGTGCAGCTTATCAGCTTCATCGCCTACNNGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTAAGCNNNCATCGTNATATAT N NNNNNGNNNNATtg ] consensusID : consensus_11565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 589 fasta sequence [GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTTAGNCNNNNGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTANGCCGNNATNGTNATATATAGNNNNNNNTAATTG] [+] EMBL CF196803 [GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTTAGNCNNNNGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTANGCCGNNATNGTNATATATAGNNNNNNNTAATTG] [+] EMBL CF197379 [GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGANNNNNNNANNNNNNCGTACCCTGATGCATTCNNNCGTATCATCGGCTTnnnnnn ] [+] EMBL CF196035 [GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCANNNTCGGATTTGTCTACCGTGNNNNNCACAGGTCCCCTGGATACTACGACGGCANNTACTGGACCATGTGGANGNTGCCCATGTTCGGGTGCACCGNNNCCACCCnnnngc ] [+] EMBL CF298212 [ GCTCACCGCGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAG ] consensusID : consensus_11565#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [AGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGNNCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGNGCACCGACGCCACCCAGGTGCTCNNNGAGCTCGANGAGGNNNNNNNNNCNTACCCTGNNN] [+] EMBL CF197149 [AGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGNNCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGNGCACCGACGCCACCCAGGTGCTCNNNGAGCTCGANGAGGNNNNNNNNNCNTACCCTGNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11565#0 CGAGCTCGTCAATTGGCASGGAGCAAGAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCC 60 consensus_11565#1 -------------------------GAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCC 35 consensus_11565#2 -------------------AGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCC 41 ********************************* consensus_11565#0 CCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCG 120 consensus_11565#1 CCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCG 95 consensus_11565#2 CCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCG 101 ************************************************************ consensus_11565#0 CCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCG 180 consensus_11565#1 CCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCG 155 consensus_11565#2 CCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCG 161 ************************************************************ consensus_11565#0 GCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCT 240 consensus_11565#1 GCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCT 215 consensus_11565#2 GCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCT 221 ************************************************************ consensus_11565#0 CCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTT 300 consensus_11565#1 CCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTT 275 consensus_11565#2 CCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTT 281 ************************************************************ consensus_11565#0 CCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACA 360 consensus_11565#1 CCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACA 335 consensus_11565#2 CCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGNNCGGATTTGTCTACCGTGAGAACCACA 341 ******************************** ************************** consensus_11565#0 GGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGT 420 consensus_11565#1 GGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGT 395 consensus_11565#2 GGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGN 401 *********************************************************** consensus_11565#0 GCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATG 480 consensus_11565#1 GCACCGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATG 455 consensus_11565#2 GCACCGACGCCACCCAGGTGCTCNNNGAGCTCGANGAGGNNNNNNNNNCNTACCCTGNNN 461 *********************** ******** **** * ******* consensus_11565#0 CATTCGTCCGTATCATCGGCTTCGACAACGTTAGGCAGGTGCAGCTTATCAGCTTCATCG 540 consensus_11565#1 CATTCGTCCGTATCATCGGCTTCGACAACGTTAGNCNNNNGCAGCTCATCAGCTTCATCG 515 consensus_11565#2 ------------------------------------------------------------ consensus_11565#0 CCTACNNGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTAAGCCGTCATCGTCATATATA 600 consensus_11565#1 CCTACAAGCCCCCGGGCTGNNNNNNNTCTGGTGGCAACTANGCCGNNATNGTNATATATA 575 consensus_11565#2 ------------------------------------------------------------ consensus_11565#0 GNNTCGTNNNNNNNNNNATCTCTGNNNNNNTGATGTC 637 consensus_11565#1 GNNNNNNNTAATTG----------------------- 589 consensus_11565#2 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||