These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1158 fasta sequence [GCAAGCGGAAGAAGGGGAGGCAGATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGC-TCTGCGCCGCCGCTCTTCGGCCCCTACCTCCGCCGCATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAA-GAATCAGTGGGCTCGGGATGATCCTGC-TTTTGTTGTCATTCTAATTCTTTTCCTTGTGTTTGCAACATCAGCTTACTGTGCAGCGTATGGAGAGAGTCCTTCACATGCTGCTTTAACAATCACTTCAGTTGTGCTTGTCCATTTCTTGTTTGCTGGGATAGTTCTGGCCACACTTTGCTGGTTTCTTACAAATTCTTACTTGAGGGAGGAACCTAACAGTCATGTGGTTGAGCAACGTGTGGAGTGGCTCTATGCATTTGATGTTCATTGCAACTCATTCTTCCCAGCCTTTGTCATCCTATATGTGCTTCAATATTTTCTATCGCCTCTGTTGGTCGCACATGGCTTCTTTCCTGCTCTATTATCAAACCTCTTGTTTGTGGTGGCAATTTCTTATTATCACTACCTGAATTTTCTAGGATATGATGTTCTTCCATTTTTGGACAGAACAACATTTTTCTTGTACCCGATTGGGCTTGTCATCATTCTCTCTCCACTGATGATACTCATAGGGTTCAATCCAACAAGATACTTTTTGAGCTTGTACTTCCGTTAAGGTCGATAACTAGAACAGTAAGAGAAGACTGGTGACAAAACTAATGGCAGATTGGGTACACACTTTTTACTCTAGCTTCTTAAATCTTTGTGTGAATTTGAGGAGAGTGAGGCTCAGGAAAAGGTCGATTTGTTCTTGAGATATATTACTGCCAGCGTGGGCCACGGGCACAGGCCTTTTGGTTGGAGCCCATTTTGGTGTCAACTTGTTCATAATATGTATTGTTTCCATTGATTAAAGAGTCAAGGACC-AGTGTACAATTTTAGTGGGAACCGGAACTTAAGCCGATTGTATCGAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAGTTTTTAGTGGCAAAAAAA] [+] EMBL AK067482 [GCAAGCGGAAGAAGGGGAGGCAGATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGC TCTGCGCCGCCGCTCTTCGGCCCCTACCTCCGCCGCATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAA GAATCAGTGGGCTCGGGATGATCCTGC TTTTGTTGTCATTCTAATTCTTTTCCTTGTGTTTGCAACATCAGCTTACTGTGCAGCGTATGGAGAGAGTCCTTCACATGCTGCTTTAACAATCACTTCAGTTGTGCTTGTCCATTTCTTGTTTGCTGGGATAGTTCTGGCCACACTTTGCTGGTTTCTTACAAATTCTTACTTGAGGGAGGAACCTAACAGTCATGTGGTTGAGCAACGTGTGGAGTGGCTCTATGCATTTGATGTTCATTGCAACTCATTCTTCCCAGCCTTTGTCATCCTATATGTGCTTCAATATTTTCTATCGCCTCTGTTGGTCGCACATGGCTTCTTTCCTGCTCTATTATCAAACCTCTTGTTTGTGGTGGCAATTTCTTATTATCACTACCTGAATTTTCTAGGATATGATGTTCTTCCATTTTTGGACAGAACAACATTTTTCTTGTACCCGATTGGGCTTGTCATCATTCTCTCTCCACTGATGATACTCATAGGGTTCAATCCAACAAGATACTTTTTGAGCTTGTACTTCCGTTAAGGTCGATAACTAGAACAGTAAGAGAAGACTGGTGACAAAACTAATGGCAGATTGGGTACACACTTTTTACTCTAGCTTCTTAAATCTTTGTGTGAATTTGAGGAGAGTGAGGCTCAGGAAAAGGTCGATTTGTTCTTGAGATATATTACTGCCAGCGTGGGCCACGGGCACAGGCCTTTTGGTTGGAGCCCATTTTGGTGTCAACTTGTTCATAATATGTATTGTTTCCATTGATTAAAGAGTCAAGGACC AGTGTACAATTTTAGTGGGAACCGGAACTTAAGCCGATTGTATCGAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAGT ] [+] EMBL C97702 [ AGAAGGGGAGGCAGATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGC TCTGCGCCGCCGCTCTTCGGCCCCTACNTCCGGCGTATCGTCAAGTGGCAACAAATNGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAAGGAATCAGTGGGCTCGGTATGATCCTGN TTTTGTTGT ] [+] EMBL C28667 [ GGGGAGGCAGATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGC TCTGCGCCGCCGCTCTTCGGCCCCTACCTCCGCCGCATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAA GAATCAGTGGGCTCGGGATGATCCTGC TTTTGTTGTCANTCTAATTCT ] [+] EMBL OSS3464A [ ATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGN TCTGCGNCGNCGATCTTCGGCCCCTACCTCCGACGAATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAA GAATCAGTGGGCTCGGGATGATCCTGN TTTTGTTGTCATTCTAATTATTTTCCTTGTGTTTGCAACATCAGNTTACTGTGCAGCGTATGGA ] [+] EMBL OSS3040A [ ATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGCTTCTGCGCCGCCGCTCTTCGGCCCCTACCTCCGCCGCATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAA GAATCAGTGGGCTCGGGATGATCCTGCTTTTTGTTGTCATTCTAATTCTTTTCCTTGTGTTTGCAACATC ] [+] EMBL AU172322 [ GTCATCATTCTCTCTCCACTGATGATACTCATAGGGTTCAATCCAACAAGATACTTTTTGAGCTTGTACTTCCGTTAAGGTCGATAACTAGANCAGTAAGAGAAGACTGGTGACAAAACTAATGGCAGATTGGGTACACACTTTTTACTCTAGCTTCTTAAATCTTTGTGTGAATTTGAGGAGAGTGAGGCTCAGGAAAAGGTCGATTTGTTCTTGAGATATATTACTGCCAGCGTGGGCCACGGGCACAGGCCTTTTGGTTGGAGCCCATTTTGGTGTCAACTTGTTCATAATATGTATTGTTTCCATTGATTAAAGAGTCAAGGACCNAGTGTACAATTTTAGTGGGAACCGGAACTTAAGCCGATTGTATCGAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAGTTTTTAGTGGCAAAAA ] [+] EMBL C97703 [ CTTCCGTTAAGGTCGATAACTAGAACAGTAAGAGAAGACTGGTGACAAAACTAATGGCAGATTGGGTACACACTTTTTACTCTAGCTTCTTAAATCTTTGTGTGAATTTGAGGAGAGTGAGGCTCAGGAAAAGGTCGATTTGTTCTTGAGATATATTACTGCCAGCGTGGGCCACGGGCACAGGCCTTTTGGTTGGAGCCCATTTTGGTGTCAACTTGTTCATAATATGTATTGTTTCCATTGATTAAAGAGTCAA NNCC AGTGTACAATTTTAGTGGGAACCGGAACTTAAGCCGATTGTATCGAAGGGGCACCAANATTGTAATCCACNTNCGTAAGAATCATGAGTTTTTAGTGGCAAAAAAA] consensusID : consensus_11589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [TTTTTTTTTTGAAGGGAAACTTTGGTTCGATATGTTTAATGAAGAATGCTATTTTTTTTCTTATAAACCAACAAGGCAATAACCCACGCCCTGATGCTTAACCGTGCTATCTGCTATCAAAGGAAATATGCCACTAAAAACTCATGATTCTTAGGCAGGTGGATTACAATGTTGGTGCCCCTTCGATACAATCGGCTTAAGTTCCGGTTCCCCCCCTTGTCTCTCCTCT] [+] EMBL CA760913 [TTTTTTTTTTGAAGGGAAACTTTGGTTCGATATGTTTAATGAAGAATGCTATTTTTTTTCTTATAAACCAACAAGGCAATAACCCACGCCCTGATGCTTAACCGTGCTATCTGCTATCAAAGGAAATATGCCACTAAAAACTCATGATTCTTAGGCAGGTGGATTACAATGTTGGTGCCCCTTCGATACAATCGGCTTAAGTTCCGGTTCCCCCCCTTGTCTCTCCTCT] consensusID : consensus_11589#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 73 fasta sequence [CAGAGAACGAGACAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAGTTTTTAGTGGCAAAAAA] [+] EMBL CA766053 [CAGAGAACGAGACAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAGTTTTTAGTGGCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11589#0 GCAAGCGGAAGAAGGGGAGGCAGATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATG 60 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 CTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGCTCTGCGCCGCCGCTCTTCGGC 120 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 CCCTACCTCCGCCGCATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAA 180 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 ATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAA 240 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 ACAAAGAATCAGTGGGCTCGGGATGATCCTGCTTTTGTTGTCATTCTAATTCTTTTCCTT 300 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 GTGTTTGCAACATCAGCTTACTGTGCAGCGTATGGAGAGAGTCCTTCACATGCTGCTTTA 360 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 ACAATCACTTCAGTTGTGCTTGTCCATTTCTTGTTTGCTGGGATAGTTCTGGCCACACTT 420 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 TGCTGGTTTCTTACAAATTCTTACTTGAGGGAGGAACCTAACAGTCATGTGGTTGAGCAA 480 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 CGTGTGGAGTGGCTCTATGCATTTGATGTTCATTGCAACTCATTCTTCCCAGCCTTTGTC 540 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 ATCCTATATGTGCTTCAATATTTTCTATCGCCTCTGTTGGTCGCACATGGCTTCTTTCCT 600 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 GCTCTATTATCAAACCTCTTGTTTGTGGTGGCAATTTCTTATTATCACTACCTGAATTTT 660 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 CTAGGATATGATGTTCTTCCATTTTTGGACAGAACAACATTTTTCTTGTACCCGATTGGG 720 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 CTTGTCATCATTCTCTCTCCACTGATGATACTCATAGGGTTCAATCCAACAAGATACTTT 780 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 TTGAGCTTGTACTTCCGTTAAGGTCGATAACTAGAACAGTAAGAGAAGACTGGTGACAAA 840 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 ACTAATGGCAGATTGGGTACACACTTTTTACTCTAGCTTCTTAAATCTTTGTGTGAATTT 900 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 ------------------------------------------------------------ consensus_11589#0 GAGGAGAGTGAGGCTCAGGAAAAGGTCGATTTGTTCTTGAGATATATTACTGCCAGCGTG 960 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 --------------------------TTTTTTTTTTGAAGGGAAACTTTGGTTCGATATG 34 consensus_11589#0 GGCCACGGGCACAGGCCTTTTGGTTGGAGCCCATTTTGGTGTCAACTTGTTCATAATATG 1020 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 TTTAATGAAGAATGCTATTTTTTTTCTTATAAACCAACAAGGCAATAACCCACGCCCTGA 94 consensus_11589#0 TATTGTTTCCATTGATTAAAGAGTCAAGGACCAGTGTACAATTTTAGTGGGAACCGGAAC 1080 consensus_11589#2 ------------------------------------------------------------ consensus_11589#1 TGCTTAACCGTGCTATCTGCTATCAAAGGAAATATGCCACTAAAAACTCATGATTCTTAG 154 consensus_11589#0 TTAAGCCGATTGTATCGAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAG 1140 consensus_11589#2 --CAGAGAACGAGAC--AAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAG 56 consensus_11589#1 GCAGGTGGATTACAATGTTGGTGCCCCTTCGATACAATCGGCTTAAGTTCCGGTTCCCCC 214 * * * ** ** ** * * **** * * * * consensus_11589#0 TTTTTAGTGGCAAAAAAA 1158 consensus_11589#2 TTTTTAGTGGCAAAAAA- 73 consensus_11589#1 CCTTGTCTCTCCTCT--- 229 ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||