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Oryza sativa
cluster # 11597 cluster # 11597       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11597#0 length = 1170 sequences # 7  
consensus_11597#1 length = 574 sequences # 1  
consensus_11597#2 length = 433 sequences # 1  

consensusID : consensus_11597#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1170
fasta sequence
                              [GGAAGTCGAGCAGTTCACCCGTCCCCACTTTCCCCTTCCCCCTCCCGCGCGCGATGGCGTCCGCCGCCGACGAGGGCAACGCGGCGGCGCCCAGGGCCGCCGTCTCGCACGTCATCTTCGACATGGACGGCCTCCTGCTCGACACGGAGGGGTTCTACACGGAGGTGCAGGAGAAGATCCTGGCGAGGTACGGCAAGGTGTTCGACTGGTCGCTCAAGGCCAAGATGATGGGCAAGAAGGCCACCGAGTCGGCGCGCATCTTCGTCGACGAGTGCGGCCTCGACGGCCTCCTCACCCCGGAGCAGTTCCTCGAGGAGCGCGAGAGCATGCTCCAGGAGCTCTTCCCCTCCTGCGCCGTCTTGCCTGGAGTGCTACGTTTGATCCATCATCTCCATGCAAATGGAGTACCAATGGCTGTTGCAACAGGATCCCACAAACGTCATTTTGCCCTGAAGACGCAGAACCACAAGGAAATGTTTACACTGATGCACCATGTTGTGATGGGGGATGATCCAGATGTGAAGACTGGCAAGCCATCTCCTGATATATTTCTTGCCGCTATGAGGAGGTTTGAGGGCAATATAGAACCAAGTAACTGCTTGGTATTTGAAGACGCACCTTCTGGTGTTGCCGCAGCAAAAAATGCTGGAATGTATGCGGTGATGGTCCCAGATTCGAGGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGC-CCTACTTATATGAAATTTTATAACTATATACTATTTAGCAAGAAAGATTGTTAGGCTTAGTGACAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATACTTCCTTTCAATAAAAAGAATCTCCATAGCTTGGTGTGTTCTTGAACCTTTTTTGTGCTTTGCTTTCCAGGGAAAAAGGCTAATATATTATGTAATA]

[+] EMBL AK101443             [GGAAGTCGAGCAGTTCACCCGTCCCCACTTTCCCCTTCCCCCTCCCGCGCGCGATGGCGTCCGCCGCCGACGAGGGCAACGCGGCGGCGCCCAGGGCCGCCGTCTCGCACGTCATCTTCGACATGGACGGCCTCCTGCTCGACACGGAGGGGTTCTACACGGAGGTGCAGGAGAAGATCCTGGCGAGGTACGGCAAGGTGTTCGACTGGTCGCTCAAGGCCAAGATGATGGGCAAGAAGGCCACCGAGTCGGCGCGCATCTTCGTCGACGAGTGCGGCCTCGACGGCCTCCTCACCCCGGAGCAGTTCCTCGAGGAGCGCGAGAGCATGCTCCAGGAGCTCTTCCCCTCCTGCGCCGTCTTGCCTGGAGTGCTACGTTTGATCCATCATCTCCATGCAAATGGAGTACCAATGGCTGTTGCAACAGGATCCCACAAACGTCATTTTGCCCTGAAGACGCAGAACCACAAGGAAATGTTTACACTGATGCACCATGTTGTGATGGGGGATGATCCAGATGTGAAGACTGGCAAGCCATCTCCTGATATATTTCTTGCCGCTATGAGGAGGTTTGAGGGCAATATAGAACCAAGTAACTGCTTGGTATTTGAAGACGCACCTTCTGGTGTTGCCGCAGCAAAAAATGCTGGAATGTATGCGGTGATGGTCCCAGATTCGAGGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGC CCTACTTATATGAAATTTTATAACTATATACTATTTAGCAAGAAAGATTGTTAGGCTTAGTGACAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATACTTCCTTTCAATAAAAAGAATCTCCATAGCTTGG                                                               ]
[+] EMBL BP184633             [         GCAGTTCACCCGTCCCCACTTTCCCCTTCCCCCTCCCGCGCGCGATGGCGTCCGCCGCCGACGAGGGCAACGCGGCGGCGCCCAGGGCCGCCGTCTCGCACGTCATCTTCGACATGGACGGCCTCCTGCTCGACACGGAGGGGTTCTACACGGAGGTGCAGGAGAAGATCCTGGCGAGGTACGGCAAGGTGTTCGACTGGTCGCTCAAGGCCAAGATGATGGGCAAGAAGGCCACCGAGTCGGCGCGCATCTTCGTCGACGAGTGCGGCCTCGACGGCCTCCTCACCCCGGAGCAGTTCCTCGAGGAGCGCGAGAGCATGCTCCAGGAGCTCTTCCCCTCCTGCGCCGTCTTGCCTGGAGTGCTACGTTTGATCCATCATCTCCATGCAAATGGAGTACCAATGGCTGTTGCAACAGGATCCCACAAACGTCATTTTGCCCTGAAGACGCAGAACCACAAGGAAATGTTTACACTGATGCACCATGTTGTGATGGGGGATGATCCAGATGTGAAGACTGGCAAGCCATCTCCTGATATATTTCTTGCCGCTATGAGGAGGTTTGAGGGCAATATAGAACCAAGTAACTGCTTGGTATTTGAAGACGCACCTTCTGGTGTTGCCGCAGCAAAAAATGCTGGAATGTATGCGGTGATGGTCCCAGATTCGAGGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGC CCTACTTATATGAAATTTTATAACTATATACTATTTAGCAAGAAAGATTGTTAGGCTTAGTGACAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATACTTCCTTTCAATAAAAAGAATCTCCATAGCTTGGTGTGTTCTTGAAaaa                                                ]
[+] EMBL AB110183             [         GCAGTTCACCCGTCCCCACTTTCCCCTTCCCCCTCCCGCGCGCGATGGCGTCCGCCGCCGACGAGGGCAACGCGGCGGCGCCCAGGGCCGCCGTCTCGCACGTCATCTTCGACATGGACGGCCTCCTGCTCGACACGGAGGGGTTCTACACGGAGGTGCAGGAGAAGATCCTGGCGAGGTACGGCAAGGTGTTCGACTGGTCGCTCAAGGCCAAGATGATGGGCAAGAAGGCCACCGAGTCGGCGCGCATCTTCGTCGACGAGTGCGGCCTCGACGGCCTCCTCACCCCGGAGCAGTTCCTCGAGGAGCGCGAGAGCATGCTCCAGGAGCTCTTCCCCTCCTGCGCCGTCTTGCCTGGAGTGCTACGTTTGATCCATCATCTCCATGCAAATGGAGTACCAATGGCTGTTGCAACAGGATCCCACAAACGTCATTTTGCCCTGAAGACGCAGAACCACAAGGAAATGTTTACACTGATGCACCATGTTGTGATGGGGGATGATCCAGATGTGAAGACTGGCAAGCCATCTCCTGATATATTTCTTGCCGCTATGAGGAGGTTTGAGGGCAATATAGAACCAAGTAACTGCTTGGTATTTGAAGACGCACCTTCTGGTGTTGCCGCAGCAAAAAATGCTGGAATGTATGCGGTGATGGTCCCAGATTCGAGGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGC CCTACTTATATGAAATTTTATAACTATATACTATTTAGCAAGAAAGATTGTTAGGCTTAGTGACAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATACTTCCTTTCAATAAAAAGAATCTCCATAGCTTGG                                                               ]
[-] EMBL BE039638             [                                                                                                                                                                                                                                                                                                                                    GCATGCTCCAGGAGCTCTTCCCCTCTTGCGCCGTCTTGCCT GAGTGGTACGTTTGATCCCTCATCTCCATGCAAATGGAGTGCCAATGGCTGTTGC ACGGGATCCCACAAACGTCATTTTGCCCTGAAGACGCAGAACCACAAGGAAATGTTTACACTGATGCACCATGTTGTGATGGGGGATGATCCAGATGTGAAGACTGGCAAGCCATCTCCTGATATATTTCTTGCCGCTATGAGGAGGTTTGAGGGCAATATAGAACCAAGTAACTGCTTGGTATTTGAAGACGCACCTTCTGGTGTTGCCGCAGCAAAAAATGCTGGAATGTATGCGGTGATGGTCCCAGATTCGAGGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGA CCTACTTATATGAAATTTTATAACTATATACTATTTAGCAAGAAAGATTGTTAGGCTTAGTGACAAGCAAAACTATGAGCATTCTTGCT                                                                                                                                  ]
[+] EMBL C27898               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGTGATGGGGGATGATCCAGATGTGAAGACTGGCAAGCCATCTCCTGATATATTTCTTGCCGCTATGAGGAGGTTTGAGGGCAATATAGAACCAAGTAACTGCTTGGTATTTGAAGACGCACCTTCTGGTGTTGCCGCAGCAAAAAATGCTGGAATGTATGCGGTGATGGTCCCAGATTCGAGGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTG CACCTTTTACAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAG AAAACTCTTGCCTTCATAGGCAGGCAGGCAG CCTATTTCTTGATCAG CCATTCGTAAAATTTAGA                                                                                                                                                                                                                                        ]
[+] EMBL CB097077             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTGAGGGCAATATAGAACCAAGTAACTGCTTGGTNTTTGAAGACGCACCTTCTGGNGTTGCCGCAGCAAAAAATGCTGGAATGTATGCGGTGATGGTCCCAGATTCGAGGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGC CCTACTTATATGAAATTTTATAACTATATACTATTTAGCAAGAAAGATTGTTAGGCTTAGTGACAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATACTTCCTTTCAATAAAAAGAATCTCCATAGCTTGGTGTGTTCTTGAACCTTTTTTGTGCTTTGCTTTCCAGGGAAAAAGGCTAATATATTATGTAATA]
[-] EMBL BE040382             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGTTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGCTCCTACTTATATGAAATTTTATAACTATATACTATTTAGCAAGAAAGATTGTTAGGCTTAGTGACAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATACTTCCTTTCAATAAAAAGAATCTCCATAGCTTGGTGTGTTCTTGAACCTTTTTTGTGCTTTGCTTTCCCGGGct                       ]


>consensus_11597#0 GGAAGTCGAGCAGTTCACCCGTCCCCACTTTCCCCTTCCCCCTCCCGCGCGCGATGGCGT CCGCCGCCGACGAGGGCAACGCGGCGGCGCCCAGGGCCGCCGTCTCGCACGTCATCTTCG ACATGGACGGCCTCCTGCTCGACACGGAGGGGTTCTACACGGAGGTGCAGGAGAAGATCC TGGCGAGGTACGGCAAGGTGTTCGACTGGTCGCTCAAGGCCAAGATGATGGGCAAGAAGG CCACCGAGTCGGCGCGCATCTTCGTCGACGAGTGCGGCCTCGACGGCCTCCTCACCCCGG AGCAGTTCCTCGAGGAGCGCGAGAGCATGCTCCAGGAGCTCTTCCCCTCCTGCGCCGTCT TGCCTGGAGTGCTACGTTTGATCCATCATCTCCATGCAAATGGAGTACCAATGGCTGTTG CAACAGGATCCCACAAACGTCATTTTGCCCTGAAGACGCAGAACCACAAGGAAATGTTTA CACTGATGCACCATGTTGTGATGGGGGATGATCCAGATGTGAAGACTGGCAAGCCATCTC CTGATATATTTCTTGCCGCTATGAGGAGGTTTGAGGGCAATATAGAACCAAGTAACTGCT TGGTATTTGAAGACGCACCTTCTGGTGTTGCCGCAGCAAAAAATGCTGGAATGTATGCGG TGATGGTCCCAGATTCGAGGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCA GTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACAA AAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTAG AAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCAGG CAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGCCCTACTTAT ATGAAATTTTATAACTATATACTATTTAGCAAGAAAGATTGTTAGGCTTAGTGACAAGCA AAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATACTTCCTT TCAATAAAAAGAATCTCCATAGCTTGGTGTGTTCTTGAACCTTTTTTGTGCTTTGCTTTC CAGGGAAAAAGGCTAATATATTATGTAATA



consensusID : consensus_11597#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence
                              [TTCCTGTGGCCACATTATAGGAACCACAGTTAACTGGCTTTTGGGTAATTTTTGAAAAGACGCACCTTTCCTGGTGTTTGCCGCAGCCAAAAAATGCTGGAATGTATCGGTGATGGTCCCAGATTCGAGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACCAAAAAGTTTGAAGATTGGGAAGTTCCCATGAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCACGGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGCCCTACTTATATGAAATTTTATAACTATATACTATTTAGCACAGAAAGATTGTTAGGCTTAGTGACACAGCAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATAATTCCTTTCATAAAAAGAATCTCCATAGCTTGGTGTGTTCTTGAAAAAAAAAA]

[+] EMBL BI807182             [TTCCTGTGGCCACATTATAGGAACCACAGTTAACTGGCTTTTGGGTAATTTTTGAAAAGACGCACCTTTCCTGGTGTTTGCCGCAGCCAAAAAATGCTGGAATGTATCGGTGATGGTCCCAGATTCGAGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACCAAAAAGTTTGAAGATTGGGAAGTTCCCATGAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCACGGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGCCCTACTTATATGAAATTTTATAACTATATACTATTTAGCACAGAAAGATTGTTAGGCTTAGTGACACAGCAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATAATTCCTTTCATAAAAAGAATCTCCATAGCTTGGTGTGTTCTTGAAAAAAAAAA]


>consensus_11597#1 TTCCTGTGGCCACATTATAGGAACCACAGTTAACTGGCTTTTGGGTAATTTTTGAAAAGA CGCACCTTTCCTGGTGTTTGCCGCAGCCAAAAAATGCTGGAATGTATCGGTGATGGTCCC AGATTCGAGTTGGATGTTTCATATCACAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTG GATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATTAGACCAAAAAGTTTGAA GATTGGGAAGTTCCCATGAAATAAGGATGTCGAATGGAAACTTTAGAAGAATGGATTTTT TGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCAGGCACGGCAGCCCTATTTCT TGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGCCCTACTTATATGAAATTTTATA ACTATATACTATTTAGCACAGAAAGATTGTTAGGCTTAGTGACACAGCAAACTATGAGCA TTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATAATTCCTTTCATAAAAAGAA TCTCCATAGCTTGGTGTGTTCTTGAAAAAAAAAA



consensusID : consensus_11597#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence
                              [CAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCNCCTTTTNCAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTANAAGAATGGATTTTTTGGTAAANAAAAAGGAGAAAAACTNTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTNTTGATCAGCCCATTNGTAAAATTTANAGAAATTTATCGCCCNACTTANATGAAATTTTATAACTATATACTATTTAGCAANAAANATTGTTAGGNTTAGTGNCAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATACTTCCTTTCAATAAAAAGAATNTCCNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU166924             [CAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCNCCTTTTNCAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAACTTTANAAGAATGGATTTTTTGGTAAANAAAAAGGAGAAAAACTNTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTNTTGATCAGCCCATTNGTAAAATTTANAGAAATTTATCGCCCNACTTANATGAAATTTTATAACTATATACTATTTAGCAANAAANATTGTTAGGNTTAGTGNCAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACATACTTCCTTTCAATAAAAAGAATNTCCNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11597#2 CAAAGGAGCTGACCAAGTTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTT GCCNCCTTTTNCAGATTAGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATA AGGATGTCGAATGGAAACTTTANAAGAATGGATTTTTTGGTAAANAAAAAGGAGAAAAAC TNTGGCCTTCATAGGCAGGCAGGCAGCCCTATTTNTTGATCAGCCCATTNGTAAAATTTA NAGAAATTTATCGCCCNACTTANATGAAATTTTATAACTATATACTATTTAGCAANAAAN ATTGTTAGGNTTAGTGNCAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGC AGCGAACTACGACATACTTCCTTTCAATAAAAAGAATNTCCNTAAAAAAAAAAAAAAAAA AAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11597#0      GGAAGTCGAGCAGTTCACCCGTCCCCACTTTCCCCTTCCCCCTCCCGCGCGCGATGGCGT 60
consensus_11597#1      ------------------------------------------------------------
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      CCGCCGCCGACGAGGGCAACGCGGCGGCGCCCAGGGCCGCCGTCTCGCACGTCATCTTCG 120
consensus_11597#1      ------------------------------------------------------------
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      ACATGGACGGCCTCCTGCTCGACACGGAGGGGTTCTACACGGAGGTGCAGGAGAAGATCC 180
consensus_11597#1      ------------------------------------------------------------
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      TGGCGAGGTACGGCAAGGTGTTCGACTGGTCGCTCAAGGCCAAGATGATGGGCAAGAAGG 240
consensus_11597#1      ------------------------------------------------------------
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      CCACCGAGTCGGCGCGCATCTTCGTCGACGAGTGCGGCCTCGACGGCCTCCTCACCCCGG 300
consensus_11597#1      ------------------------------------------------------------
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      AGCAGTTCCTCGAGGAGCGCGAGAGCATGCTCCAGGAGCTCTTCCCCTCCTGCGCCGTCT 360
consensus_11597#1      ------------------------------------------------------------
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      TGCCTGGAGTGCTACGTTTGATCCATCATCTCCATGCAAATGGAGTACCAATGGCTGTTG 420
consensus_11597#1      ------------------------------------------------------------
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      CAACAGGATCCCACAAACGTCATTTTGCCCTGAAGACGCAGAACCACAAGGAAATGTTTA 480
consensus_11597#1      ------------------------------------------------------------
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      CACTGATGCACCATGTTGTGATGGGGGATGATCCAGATGTGAAGACTGGCAAGCCATCTC 540
consensus_11597#1      ------------------------------------------------------------
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      CTGATATATTTCTTGCCGCTATGAGGAGGTTTGAGGGCAATATAGAACCAAGTAACTGCT 600
consensus_11597#1      ---------TTCCTGTGGCCACAT-----TATAGGAACCACAGTTAACTGGCTT-TTGGG 45
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      TGGTATTTGAA--GACGCACCTT--CTGGTGTT-GCCGCAGC-AAAAAATGCTGGAATGT 654
consensus_11597#1      TAATTTTTGAAAAGACGCACCTTTCCTGGTGTTTGCCGCAGCCAAAAAATGCTGGAATGT 105
consensus_11597#2      ------------------------------------------------------------
                                                                                   

consensus_11597#0      ATGCGGTGATGGTCCCAGATTCGAGGTTGGATGTTTCATATCACAAAGGAGCTGACCAAG 714
consensus_11597#1      AT-CGGTGATGGTCCCAGATTCGAG-TTGGATGTTTCATATCACAAAGGAGCTGACCAAG 163
consensus_11597#2      -------------------------------------------CAAAGGAGCTGACCAAG 17
                                                                  *****************

consensus_11597#0      TTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATT 774
consensus_11597#1      TTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCACCTTTTACAGATT 223
consensus_11597#2      TTCTCAGTTCCCTGCTGGATTTCAAACCTGGTGAATGGGGCTTGCCNCCTTTTNCAGATT 77
                       ********************************************** ****** ******

consensus_11597#0      AGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAA 834
consensus_11597#1      AGACCAAAAAGTTTGAAGATTGGGAAGTTCCCATGA---AATAAGGATGTCGAATGGAAA 280
consensus_11597#2      AGACAAAAAAGTTTGAAGATTGGGAAGTTCCCATGAACAAATAAGGATGTCGAATGGAAA 137
                       **** *******************************   *********************

consensus_11597#0      CTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCA 894
consensus_11597#1      CTTTAGAAGAATGGATTTTTTGGTAAAGAAAAAGGAGAAAAACTCTGGCCTTCATAGGCA 340
consensus_11597#2      CTTTANAAGAATGGATTTTTTGGTAAANAAAAAGGAGAAAAACTNTGGCCTTCATAGGCA 197
                       ***** ********************* **************** ***************

consensus_11597#0      GGCA-GGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGCCC 953
consensus_11597#1      GGCACGGCAGCCCTATTTCTTGATCAGCCCATTCGTAAAATTTAGAGAAATTTATCGCCC 400
consensus_11597#2      GGCA-GGCAGCCCTATTTNTTGATCAGCCCATTNGTAAAATTTANAGAAATTTATCGCCC 256
                       **** ************* ************** ********** ***************

consensus_11597#0      TACTTATATGAAATTTTATAACTATATACTATTTAGCA-AGAAAGATTGTTAGGCTTAGT 1012
consensus_11597#1      TACTTATATGAAATTTTATAACTATATACTATTTAGCACAGAAAGATTGTTAGGCTTAGT 460
consensus_11597#2      NACTTANATGAAATTTTATAACTATATACTATTTAGCA-ANAAANATTGTTAGGNTTAGT 315
                        ***** ******************************* * *** ********* *****

consensus_11597#0      GACAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACAT 1072
consensus_11597#1      GACACAGCAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACAT 520
consensus_11597#2      GNCAAGCAAAACTATGAGCATTCTTGCTGCCTACTATTTTGTGGCAGCGAACTACGACAT 375
                       * **    ****************************************************

consensus_11597#0      ACTTCCTTTCAATAAAAAGAATCTCCATAGCTTGGTGTGTTCTTGAACCTTTTTTGTGCT 1132
consensus_11597#1      AATTCCTTTCA-TAAAAAGAATCTCCATAGCTTGGTGTGTTCTTGAAAAAAAAAA----- 574
consensus_11597#2      ACTTCCTTTCAATAAAAAGAATNTCCNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 433
                       * ********* ********** *** **                **             

consensus_11597#0      TTGCTTTCCAGGGAAAAAGGCTAATATATTATGTAATA 1170
consensus_11597#1      --------------------------------------
consensus_11597#2      --------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)