These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 598 fasta sequence [TTTTAGGAAAGGGAAAACAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCACAAGCAATTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACAT-CGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT-CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAGG] [-] EMBL CF322069 [TTTTAGGAAAGGGAAAACAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCACAAGCAATTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACATtttctactc ] [-] EMBL C97679 [ TTTTTTTTTTTTTTTTTTTTTTTAGANAGCACAAGCAATTAGGNTTGGATGTTCTGATCCTGGNACATTAAATCAACAAAGANTTTAAACAT CGGTACAAGAAGCAGTGAGGNCAACTTGCACGTTTTCAGTGTACAGGCAGNTGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGGAGCAGCACTGTCAACTTCTTGTACATCTACTGANGGTTGGNCCCTTTTGCCATNGGGTCCC CCCTTTCTATCAAGCTGNATAGGGGGGGCGGCNCCCcc ] [+] EMBL CB658916 [ CACAAGCAATTAGGATTGGATGTTCTGATCCTCGTACATTAAATCAACAAAGAATTTAAACAT CGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAG ] [+] EMBL CB657490 [ AATTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACAT CGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAG ] [+] EMBL CA761898 [ tttttttttTTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACATNCGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAG ] [+] EMBL CB634931 [ TGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACAT CGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATAAAACGCCGTACCCTGGAAACATTGGAG ] [+] EMBL CB634930 [ ACATTACCTTAACAAAGAATTTAAACAT CGGTACAACAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCTTATCTAACAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCTTTTCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATAAAACGCCGTACCCTGGAAACATTGGAG ] [-] EMBL AU166914 [ TGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTAT CGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAGG] consensusID : consensus_11598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [TTTTTTAGTGACACAAAAACGAGATAGCACAAGCAATTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACATCGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTATCGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATA] [-] EMBL AU166915 [TTTTTTAGTGACACAAAAACGAGATAGCACAAGCAATTAGGATTGGATGTTCTGATCCTGGTACATTAAATCAACAAAGAATTTAAACATCGGTACAAGAAGCAGTGAGGTCAACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAATTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTCCCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTGACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTACATCTACTGAAGTTTGATCCTTTTTGCTATCGCTCCCACCATTACTATCATGCTGAATAGAGGGTGCAGCACCCACATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11598#0 TTTTAGGAAAGGGAAAACAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAA 60 consensus_11598#1 ------------------------------------------------------------ consensus_11598#0 AATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTT 120 consensus_11598#1 ------------------------------------------------------------ consensus_11598#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCACAAGCAATTAGGATTGGATGTTC 180 consensus_11598#1 --------TTTTTTAGTGACACAAAAACGAGATAGCACAAGCAATTAGGATTGGATGTTC 52 ****** * **************************** consensus_11598#0 TGATCCTGGTACATTAAATCAACAAAGAATTTAAACATCGGTACAAGAAGCAGTGAGGTC 240 consensus_11598#1 TGATCCTGGTACATTAAATCAACAAAGAATTTAAACATCGGTACAAGAAGCAGTGAGGTC 112 ************************************************************ consensus_11598#0 AACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAA 300 consensus_11598#1 AACTTGCACGTTTTCAGTGTACAGGCAGATGAAGCAAGGAATGAGGGTGGGTAAGTTGAA 172 ************************************************************ consensus_11598#0 TTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTC 360 consensus_11598#1 TTCCAATGATGTACTTGTCAACCAAAGAATCTCAGCTCAAGTCTTCACAATTGAGGGTTC 232 ************************************************************ consensus_11598#0 CCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTG 420 consensus_11598#1 CCAAAATGTCGAACTCTGGTGTCATCAATTTAGAAGTAATTTGTCCAGAAAGTCATTGTG 292 ************************************************************ consensus_11598#0 ACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTA 480 consensus_11598#1 ACCCTAGCTTCATAAACTCAAGTTTTGTTGCAACGGAAGCAGCACTGTCAACTTCTTGTA 352 ************************************************************ consensus_11598#0 CATCTACTGAAGTTTGATCCTTTTTGCTATCGCTCCCACCATTACTATCATGCTGAATAG 540 consensus_11598#1 CATCTACTGAAGTTTGATCCTTTTTGCTATCGCTCCCACCATTACTATCATGCTGAATAG 412 ************************************************************ consensus_11598#0 AGGGTGCAGCACCCACATAACCTCTATATATAACGCCGTACCCTGGAAACATTGGAGG 598 consensus_11598#1 AGGGTGCAGCACCCACATA--------------------------------------- 431 ******************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||