These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1273 fasta sequence [TCCGCTCGAAGAAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCA-GGCAGA-TGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGC-AATCCATTTTATGGTG-CGAGCTCAGGTCTAATTAAAACT-GGGTTAGGAGCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATATTAACAGATACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTGAAAGTTATACTGTTTCCGTTCCTTCACAGGGGGCATTGGACTAGGATAAGTGAGCCTGTTGGTGGCCGACTGTCGTACAAACCTCCAATCTAT-GACATCAATGCACCGGATCTTTACATCCCTTTCATGGCATTCGGTAGCTTCATTATTCTTGC-GGGCTTTACATTAGGTTTCATGGGAAAGTTTACTCCAGAAGCTATAAATCTGCAGTTCAGCAGAGGACTCATTGGATGGGCCTTGCAGATTGTGATCCTGAAAGGGCTGCTCTACTCGATGGGCGGTGGAGAGGTGCCGCTGCTCGACCTGGTAGCTTATGGCGGATATCTATTTGCCGGGCTTTCCCTTGCTGTCATCTCGAGGCTTCTGTGGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGTGTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCACTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTCTTCTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATAGTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTGTGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAAGTTTATGAGTTCATAACTGGATTTATGTTCGATCTCCGTAAAATATATATACAAAAATTTTGTTTATAGAAAAAA] [+] EMBL OS0946A [TCCGCTCGAAGAAATCGAAGCCGCGCTNCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCNCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTNCCCCCCTCCTCGCGGCG GCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCAGCCGCA GGCAGA TGCCCTCGGCAAATCCTCAGCCTGGGCAATTTGGCAAATCCATTTTATGGTG CGAGCTCAGGTCTAATTAAAACT GGGTTAGGAGCATATGGAGAGAAGTTCCTTGGTT CAGTTCGGAATT ATG AAAG AATAT ] [+] EMBL AU062388 [ CCGCTCGAAGAAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCA GGCAGA TGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGC AATCCATTTTATGGTGNGGAGCTCAGGTCTAATTAAAAAT GGGGTAGGAGCATATGGAGAGAAGTTCCTTGGTTC ] [+] EMBL AK100494 [ CGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCAGGGCAGA TGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGC AATCCATTTTATGGTG CGAGCTCAGGTCTAATTAAAACT GGGTTAGGAGCATATGGAGAGAAGCTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATATTAACAGATACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTGAAAGTTATACTGTTTCCGTTCCTTCACAGGGGGCATTGGACTAGGATAAGTGAGCCTGTTGGTGGCCGACTGTCGTACAAACCTCCAATCTAT GACATCAATGCACCGGATCTTTACATCCCTTTCATGGCATTCGGTAGCTTCATTATTCTTGC GGGCTTTACATTAGGTTTCATGGGAAAGTTTACTCCAGAAGCTATAAATCTGCAGTTCAGCAGAGGACTCATTGGATGGGCCTTGCAGATTGTGATCCTGAAAGGGCTGCTCTACTCGATGGGCGGTGGAGAGGTGCCGCTGCTCGACCTGGTAGCTTATGGCGGATATCTATTTGCCGGGCTTTCCCTTGCTGTCATCTCGAGGCTTCTGTGGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGTGTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCACTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTCTTCTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATAGTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTGTGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAAGTTTATGAGTTCATAACTGGATTTATGTTCGATCTCCGTAAAATATATATACAAA ] [+] EMBL CA755459 [ CCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCAGGGCAGA TGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGC AATCCATTTTATGGTG CGAGCTCAGGTCTAATTAAAACT GGGTTAGGAGCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATATTAACAGATACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTGAAAGTTATACTGGTTCCGTTCCTTCACAGGGGGCATTGGACTAGGATTAGTGAGCCTGTTGGTGGCCGACTGTCGTACAAACCTCCAATCTATGGACATC ATGCACCGGATCTTTACATCCCTTTCATGGGATTCGGTAGCTTCCTTA TCTTGCGGGGCTTTA ] [+] EMBL C28636 [ CTCCGCCTCCGCCTCCNATCTGCTGCGGCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTNAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCNAGGGGGCCGACCTCCTTCTAGCNATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCGGCCGCA GGCAGATTGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGC AATCCATTTNATGGTG CGAGCTCAGGTCTAATTAAAACTGGGGTTAGG ] [-] EMBL CB683961 [ CCTGTTGGTGGCCGACTGTCGTACAAACCTCCAATCTAT GACATCAATGCACCGGATCTTTACATCCCTTTCATGGCATTCGGTAGCTTCATTATTCTTGC GGGCTTTACATTAGGTTTCATGGGAAAGTTTACTCCAGAAGCTATAAATCTGCAGTTCAGCAGAGGACTCATTGGATGGGCCTTGCAGATTGTGATCCTGAAAGGGCTGCTCTACTCGATGGGCGGTGGAGAGGTGCCGCTGCTCGACCTGGTAGCTTATGGCGGATATCTATTTGCCGGGCTTTCCCTTGCTGTCATCTCGAGGCTTCTGTGGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGTGTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCACTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTCTTCTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATAGTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTGTGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAAGTTTATGAGTTCATAACTGGATTTATGTTCGATATGGGTAAAATATATATA ] [-] EMBL CF331697 [ GGTTTCATGGGAAAGTTTACTCCAGAAGCTATAAATCTGCAGTTCAGCAGAGGACTCATTGGATGGGCCTTGCAGATTGTGATCCTGAAAGGGCTGCTCTACTCGATGGGCGGTGGAGAGGTGCCGCTGCTCGACCTGGTAGCTTATGGCGGATATCTATTTGCCGGGCTTTCCCTTGCTGTCATCTCGAGGCTTCTGTGGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGTGTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCACTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTCTTCTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATAGTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTGTGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAAGTTTATGAGTTCATAACTGGATTaaaaaa ] [+] EMBL AU172314 [ GGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGTGTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCACTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTNTTCTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATAGTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTGTGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAAGTTTATGAGTTCATAACTGGATTTATGTTCGATCTCCGTAAAATATATATACAAAAATTTTGTTTATAGAAAAAA] consensusID : consensus_11621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [AAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGTCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCAGGGCAGATGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGCAATCCATTTTATGGTGCGAGCTCAGGTCTAATTAAAACTGGGTTAGGAGCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATGTGAGTAGCTAGCTAGTGAAGAGCCTTGACCCTAGTGTTTTAATTACTCGCTATCTTATTAGTTTTGTCACACTACCTCTGAATATGTATTGGTTTTGCAGATTAACAGATACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTG] [+] EMBL CF331698 [AAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCGGCGGCGCGATCCGGCAGTCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTTTCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAGGGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATGCCTCCTATAGGGCAGATGCCTCCTGCCGCAGGGCAGATGCCCTCGGCAAATCCTCAGCCTGGCCAATTTGGCAATCCATTTTATGGTGCGAGCTCAGGTCTAATTAAAACTGGGTTAGGAGCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATGTGAGTAGCTAGCTAGTGAAGAGCCTTGACCCTAGTGTTTTAATTACTCGCTATCTTATTAGTTTTGTCACACTACCTCTGAATATGTATTGGTTTTGCAGATTAACAGATACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11621#0 TCCGCTCGAAGAAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCG 60 consensus_11621#1 -----------AAATCGAAGCCGCGCTTCCCCTCTCCGCCTCCGCCTCCGATCTGCTGCG 49 ************************************************* consensus_11621#0 GCGGCGCGATCCGGCAGCCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTT 120 consensus_11621#1 GCGGCGCGATCCGGCAGTCGGCGACCTCCCTCCGCCTCCTTCCCGACCCTTTCGTAGCTT 109 ***************** ****************************************** consensus_11621#0 TCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAG 180 consensus_11621#1 TCTCAATCCCCTCCCCCCCTCCTCGCGGCGCGCGCACGGCCGGCTGAGAAGGTTTCCGAG 169 ************************************************************ consensus_11621#0 GGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATG 240 consensus_11621#1 GGGGCCGACCTCCTTCTAGCCATGTACAACAATTATGGAAATTCTCCTGGAATGCAGATG 229 ************************************************************ consensus_11621#0 CCTCCTATAGGGCAGATGCCTCCTGCCGCAGG-CAGATGCCCTCGGCAAATCCTCAGCCT 299 consensus_11621#1 CCTCCTATAGGGCAGATGCCTCCTGCCGCAGGGCAGATGCCCTCGGCAAATCCTCAGCCT 289 ******************************** *************************** consensus_11621#0 GGCCAATTTGGCAATCCATTTTATGGTGCGAGCTCAGGTCTAATTAAAACTGGGTTAGGA 359 consensus_11621#1 GGCCAATTTGGCAATCCATTTTATGGTGCGAGCTCAGGTCTAATTAAAACTGGGTTAGGA 349 ************************************************************ consensus_11621#0 GCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATATTAACAGA 419 consensus_11621#1 GCATATGGAGAGAAGTTCCTTGGTTCCAGTTCGGAATTCATGCAAAGCAATGTGAGTAGC 409 *************************************************** * * ** consensus_11621#0 TACTTCTCCAACCCGCAGTACTATTTCCATGTGAATGATCAGTATGTCAGGAACAAGCTG 479 consensus_11621#1 TAGCTAGTGAAGAGCCTTGACCCTAGTGTTTTAATTACTCGCTATCTTA----TTAGTTT 465 ** * ** * ** * * * * * ** *** * * ** * consensus_11621#0 AAAGTTATACTGTTTCCGTTCCTTCACAGGGGGCATTGGACTAGGATAAGTGAGCCTGTT 539 consensus_11621#1 --TGTCACACTACCTCTGAATATGTATTGGTTTTGCAGATTAACAGATACTTCTCCAACC 523 ** * *** ** * * * ** * * * * ** consensus_11621#0 GGTGGC-CGACTGTCGTACAAACCTCCAATCTATGACATCAATGCACCGGATCTTTACAT 598 consensus_11621#1 CGCAGTACTATTTCCATGTGAATGATCAGT--ATGTCAGGAACAAGCTG----------- 570 * * * * * * * ** ** * *** ** ** * * consensus_11621#0 CCCTTTCATGGCATTCGGTAGCTTCATTATTCTTGCGGGCTTTACATTAGGTTTCATGGG 658 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 AAAGTTTACTCCAGAAGCTATAAATCTGCAGTTCAGCAGAGGACTCATTGGATGGGCCTT 718 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 GCAGATTGTGATCCTGAAAGGGCTGCTCTACTCGATGGGCGGTGGAGAGGTGCCGCTGCT 778 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 CGACCTGGTAGCTTATGGCGGATATCTATTTGCCGGGCTTTCCCTTGCTGTCATCTCGAG 838 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 GCTTCTGTGGGCTTACTCGTACTTCGTTATGATGCCATGGATGAGCCTTTGTATGGGGGT 898 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 GTTCTTGGTGAGGACGATGAAGAGGGTGCTCTTCACGGAGATGAGGAGCAGCGAGAGGCA 958 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 CTCGACGCGGCAGCACTATTTCCTGCTCTTCCTGGCAATTTCGCAATTCCCCCTGTTCTT 1018 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 CTGGCTTGGCAACATAGGTGCATGAAAACATTTTTCTGGTTGCGGTTTGTCGGTATAATA 1078 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 GTTAAACCGTGGTGTTTAGGTTCATTGTAAAATAGTTTTTCAATAGATTTCAACAGCTTG 1138 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 TGTCGTTTGTCCATTAGAGTATGTTTATCGACAGGGTTTGGTAGATATGTGCCGATGTAA 1198 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 GTTTATGAGTTCATAACTGGATTTATGTTCGATCTCCGTAAAATATATATACAAAAATTT 1258 consensus_11621#1 ------------------------------------------------------------ consensus_11621#0 TGTTTATAGAAAAAA 1273 consensus_11621#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||