These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 716 fasta sequence [ACACGTCGCAAGTCGAAGCACAAAACG-CAAGCAACGAATCTCAATCCACAGGCTCACAC-TGATACGCAACGCACGTAGCTAC-TGTACTGTAGGAGCAAAAGAAAAGAAAAGAT-GCAGACGGCGAAGGTGAAGGT-GCAGGACATGGTGAGCGGTGCCAAGGAGAAGGTGAAGGAGGGGACGGCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGC-AC-GGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCAC-GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTAACATGCTTGATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCAAAAAAAAAA] [+] EMBL AK063682 [ACACGTCGCAAGTCGAAGCACAAAACG CAAGCAACGAATCTCAATCCACAGGCTCACAC TGATACGCAACGCACGTAGCTAC TGTACTGTAGGAGCAAAAGAAAAGAAAAGAT GCAGACGGCGAAGGTGAAGGT GCAGGACATGGTGAGCGGTGCCAAGGAGAAGGTGAAGGAGGGGACGGCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGC AC GGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTTACGGCCGGCGGCAACCGCCACCACCAC GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGATGTAAAATTAACATGCTTGATGTAGTTCTGTTCAATGAAAGGGC ] [+] EMBL OSC868 [ AAAACG CAAGCAACGAATCTCAATCCACAGGCTCACAC TGATACGCAACGCACGTAGCTAC TGTACTGTAGGAGCAAAAGAAAAGAAAAGAT GCAGACGGCGAAGGTGAAGGT GCAGGACATGGTGAGCGGTGCCAAGGAGAAGGTGAAGGAGGGGACGGCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGC AC GGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAA GNACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGG GCACCGNGCCAACGGCACCACGG ] [+] EMBL AU163829 [ AACGCCAANCAACGAATCTCAATCCACAGGCTCACAN TGATACGCAACGCACGTAGCTACTTGTACTGTAGGAGCAAAAGAAAAGAAAAGAT GCAGACGGCAAAGGTGAA GT GCAGGACATGGT AACGGTGCCAAGGAGAAGGTGAAGGA GGGACGGCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGC AC GGCGAGAAGGAGATGGCCAAGCAGGA GAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGA GGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTTACGGCCGGCGGCAACCGCCACCACCAC GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGATGTAAAATTAACATGCTTGATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCAAAAA ] [+] EMBL BI799243 [ TCAATCCACAGGCTCACACGTGATACGCTACGCACGTAGCTAC TGTACT TAGGCCCAAAAGAAAAG AAAGATCCCAGCCGGCGAAGTTGAAGGTCGCAGAACATGGTGA CCGT CCAAGGAGAAGTTGAAGGA GGGACGCCCAAGGCGCACGGCAAGCCCGGCCAGGCGACGGCGGCCACGC AC GGCGAGAAGGAGATGCCCAAGCAGGAGGAGAA GCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCAC GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAAaa ] [+] EMBL BI798597 [ GGACATGGTGA CGGTCCCAAGGAGAA GTGAAGGA GGGAC GCCAAGGCGCACGGCAAAGCCGGCCAGGCGAC GCGGCCACGCAAC GGCGAGAAGGAGATGCCCAAGCAGGAGGAGAA GCCGCCAAGGCACAGGCCAA GCCGACGAGCACCAGGAGAGGGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCAC GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAAaa ] [+] EMBL BI797485 [ GAGAAGTTGAAGGAGGGGACGGCCAAGGCGCACGGCAA GCCGGCCAGGCGACGGCGGCCACGC AC GGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCAC GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTA ATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCAAAAAAAAAA] [+] EMBL BI798543 [ CGCAACGGGCGAGAAGGAGAT GCCAA CAGGAGGAGAA GCC GCAA GCACAGCCCAA GCCGACGAGCACCAGGAGA GGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCACAGCTCCGGTCGGCGGCCCC CCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAATGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTA ATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTAAAAAAAAAA ] consensusID : consensus_11653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence [GCGCACGCAAGCCGCCAGCGACGCGCCACGCACGGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAG-CACCAGG-AGAGGG-CGGAGCACCGCGCC-AACGCCACCAC-GGGCC-GCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCC-GCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGAC-AATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTAATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCATGTGTTTTTGAAAAACGCATCTACGGATCTACTTATATCGATGAATGTAATCATGTACCGTGTCAAAAAAAAAAA] [+] EMBL BI795839 [GCGCACGCAAGCCGCCAGCGACGCGCCACGCACGGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAG CACCAGG AGAGGG CGGAGCACCGCGCC AACGCCACCAC GGGCC GCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCC GCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGAC AATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTAATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCATGTGTTTTTGAAAAA ] [+] EMBL BI799834 [ GCCAA GCCGACGAGTCACCAGGTAGAGGGTCGGAGCACCGCGCCAAACGCCACCACAGGGCCAGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTAATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCATGTGTTTTTGAAGTACGCATCTACGGATCTACTTATATCGATGAATGTAATCATGTACCGTGTCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11653#0 ACACGTCGCAAGTCGAAGCACAAAACGCAAGCAACGAATCTCAATCCACAGGCTCACACT 60 consensus_11653#1 ------------------------------------------------------------ consensus_11653#0 GATACGCAACGCACGTAGCTACTGTACTGTAGGAGCAAAAGAAAAGAAAAGATGCAGACG 120 consensus_11653#1 ------------------------------------------------------------ consensus_11653#0 GCGAAGGTGAAGGTGCAGGACATGGTGAGCGGTGCCAAGGAGAAGGTGAAGGAGGGGACG 180 consensus_11653#1 ------------------------------------------------------------ consensus_11653#0 GCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGCACGGCGAGAAGGAGATG 240 consensus_11653#1 ------GCGCACG-CAAG--CCGCCAG-CGACGC--GCCACGCACGGCGAGAAGGAGATG 48 ******* **** * ***** ***** ************************ consensus_11653#0 GCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGG 300 consensus_11653#1 GCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGG 108 ************************************************************ consensus_11653#0 GCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCC 360 consensus_11653#1 GCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCC 168 ************************************************************ consensus_11653#0 GGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCG 420 consensus_11653#1 GGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCG 228 ************************************************************ consensus_11653#0 GCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAG 480 consensus_11653#1 -CCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAA-TCGTACATCTAG 286 ********************************************** ************ consensus_11653#0 ATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTT 540 consensus_11653#1 ATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTT 346 ************************************************************ consensus_11653#0 CAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTAC 600 consensus_11653#1 CAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTAC 406 ************************************************************ consensus_11653#0 GCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAAT 660 consensus_11653#1 GCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAAT 466 ************************************************************ consensus_11653#0 TAACATGCTTGATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCAAAAA------AAA 714 consensus_11653#1 TA---------ATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCATGTGTTTTTGAAA 517 ** ************************************ *** consensus_11653#0 AA---------------------------------------------------------- 716 consensus_11653#1 AACGCATCTACGGATCTACTTATATCGATGAATGTAATCATGTACCGTGTCAAAAAAAAA 577 ** consensus_11653#0 -- consensus_11653#1 AA 579 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||