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Oryza sativa
cluster # 11660 cluster # 11660       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11660#0 length = 1215 sequences # 7  
consensus_11660#1 length = 979 sequences # 1  
consensus_11660#2 length = 420 sequences # 1  

consensusID : consensus_11660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1215
fasta sequence
                              [TCGCCGCCGGAGCCCGGAAGCTAGCGCCTCGTCGACTTGGGCGGCGGCTGAAGTCAGTGGCCGAAGGAGCGGGGATTACTTGCCCGCCTCGAAGGCTCTCCGCCGGCGGGCAGGCGGGATAGCGCGGCAGCGGCCCACGCCGGCAGATCAGGTGGGGAGAGAAGCTCCGCCGTCCGTGCCTGCGCCGGTTTCCACGAGAGCGGCGTCGCCTGTGTCCTGCTGCTGCTACCTTTGCTGCCGCATCCTCGCCGCTCTGCATCGGTGGACGTCTGGGATGGCGGACGGTTCGTTTCTTGATCGGATGGTGTCTCAAC-TTCGGTCGACGTGC-AGGTACTACACTGGATATCCCAAGGATCTAGGGCCATCAAG-AATTATACCGTTCACGTCAGAGCGTCAATTCGTGC-AGCTGTTGC-ATGAAGGCCGTCCAGTAGTTGTTGCCTTTACTATTAAGTGCACTTATACTCAACACCTTGATAAGGTACTGGAGGAAGCTGCTGCTACATTTCATCCGCATGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCTGGATTTTGCCTCACAAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGAACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCACGAAGTACTCGGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCATGTATGGATTCCGGGAATATTTTAAGAAGCACGGATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTGTGATGAAACATGCATAGTTAGTTAACATACTATGAATGTACGTGAATGCACGTTCAGCCTGTACTAGAATACTT-TTGTTCAAAGCC-TTTCTGTATGTGGCATTATCTTAAAATGCTTGCTNATCGGNTCTCATGGCAGCTATCGGGCTNCGNTGGGCTAANANACTGTGACAGGATAGGTCTTATTATGCTGCATGCCTTTTTTGTGAGTAATGACTAGACTTTCAGATTCAGNTGTAAATTCAATGACTTATGGCTTAGCATGCCTCAACCTTCTACATNCCTTTGNTGTANGGTGCAGGGAAGCCGCCGAAGTTTTAACATATTGCTGATTGNACCCGGAGATTAGTCATGAAACAATGGCCACTGGTTATACCATCGGATTTGATGGGCGGGGGGCTTAGNATAATTTGCATGGAAAATATTATTTTCGAAATG]

[+] EMBL AK119703             [TCGCCGCCGGAGCCCGGAAGCTAGCGCCTCGTCGACTTGGGCGGCGGCTGAAGTCAGTGGCCGAAGGAGCGGGGATTACTTGCCCGCCTCGAAGGCTCTCCGCCGGCGGGCAGGCGGGATAGCGCGGCAGCGGCCCACGCCGGCAGATCAGGTGGGGAGAGAAGCTCCGCCGTCCGTGCCTGCGCCGGTTTCCACGAGAGCGGCGTCGCCTGTGTCCTGCTGCTGCTACCTTTGCTGCCGCATCCTCGCCGCTCTGCATCGGTGGACGTCTGGGATGGCGGACGGTTCGTTTCTTGATCGGATGGTGTCTCAAC TTCGGTCGACGTGC AGGTACTACACTGGATATCCCAAGGATCTAGGGCCATCAAG AATTATACCGTTCACGTCAGAGCGTCAATTCGTGC AGCTGTTGC ATGAAGGCCGTCCAGTAGTTGTTGCCTTTACTATTAAGTGCACTTATACTCAACACCTTGATAAGGTACTGGAGGAAGCTGCTGCTACATTTCATCCGCATGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCTGGATTTTGCCTCACAAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGAACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCACGAAGTACTCGGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCATGTATGGATTCCGGGAATATTTTAAGAAGCACGGATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTGTGATGAAACATGCATAGTTAGTTAACATACTATGAATGTACGTGAATGCACGTTCAGCCTGTACTAGAATACTT TTGTTCAAAGCC TTTCTGTATGTGGCATTATCTTAA                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU064305             [              CGGAAGCTAGCGCCTCGTCGACTTGGGCGGCGGCTGAAGTCAGTGGCCGAA GAGCGGGGATTACTTGCCCGCCTCGAAGGCTCTCCGCCGGCGGGCAGGCGGGATAGCGCGGCA NGGCCCACGCCGGCAGATCAGGTGGGGAGAGAAGCTCCGCCGTCCGTGCCTGCGCCGGTTTCCACGAGAGCGGCGTCG CTGTGTCCTGCTGCTGCTACCTTTGCTGCCGCATCCTCGCCGCTCTGCATCGGTGGACGTCTGGGATGGCGGACGGTTCGTTTCTTGATCGGATGGTGTCTCAACTTTCGGTCGACGTGCAAGGTACTACANTGGATATNCCAAGGATCTAGGGCCATCAAG AATTATACCGTTCACGTCANAGCGTCAATTCGTGC AACTTTTTCAATGAAGGCCGTCCA TAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU064236             [              CGGAAGCTAGCGCCTCGTCGACTTGGGCGGCGGCTGAAGTCAGTGGCCGAAGGAGCGGGGATTACTTGCCCGCCTCGAAGGCTCTCCGCCGGCGGGCAGGCGGGATAGCGCGGCAG GGCCCACGCCGGCAGATCAGGTGGGGAGAGAAGCTCCGCCGTCCGTGCCTGCGCCGGTTTCCACGAGAGCGGCGTCGCCTGTGTCCTGCTGCTGCTACCTTTGCTGCCGCATCCTCGCCGCTCTGCATCGGTGGACGTCTGGGATGGCGGACGGTTCGTTTCTTGATCGGATGGTGTCTCAAC TTCGGTCGACGTGC AGGTACTACACTGGATATCCCAAGGATCTAGGGCCATCAAGAAATTATACCGTTCANGTCANAGCGTCAATTCGTGCAAGTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB097210             [                                                                                  CCCGCCTCGAAGGCTCTCCGCCGGCGGGCAGGCGGGATAGCGCGGCAGCGGCCCACGCCGGCAGATCAGGTGGGGAGAGAAGCTCCGCCGTCCGTGCCTGCGCCGGTTTCCACGAGAGCGGCGTCGCCTGTGTCCTGCTGCTGCTACCTTTGCTGCCGCATCCTCGCCGCTCTGCATCGGTGGACGTCTGGGATGGCGGACGGTTCGTTTCTTGATCGGATGGTGTCTCAAC TTCGGTCGACGTGC AGGTACTACACTGGATATCCCAAGGATCTAGGGCCATCAAG AATTATACCGTTCACGTCAGAGCGTCAATTCGTGC AGCTGTTGC ATGAAGGCCGTCCAGTAGTTGTTGCCTTTACTATTAAGTGCACTTATACTCAACACCTTGATAAGGTACTGGAGGAAGCTGCTGCTACATTTCATCCGCATGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCTGGATTTTGCCTCACAAGGCAAAAGAATGAGTATCCGCTTATTGAAGTATTTTACAACCCAGAACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCACGAAGTACTCGGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCATGTATGGATTCCGGGAATATTTTAAGAAGCACGGATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGNTGGGATGAAACATGCATAGNTAGGTAACATACTATGAATGNACGTGAATGCACGTTCAGCCTGTACTANAATACTT TTGGTCAAAGCCTTTTNTGTATGNGGCATTATCTTAAAAAGCTTGCTNATCGGNTCTCATGGCAGCTATCGGGCTNCGNTGGGCTAANAN                                                                                                                                                                                                                                                                                  ]
[+] EMBL BQ909038             [                                                                                                                                                                                                                                                                                                               GGTGTCTCAAC TTCGGTCAACGTGC AGGTACTACACTGGATATCCCAAGGATCTA GGCCATCAAG AATTATACCGTTCACGTCAGAGCGTCAATTCGTGC AGCTGTTGC ATGAA GCCGTCCAGTAGTTGTTGCCTTTACTATTAAGTGCACTTATACTCAACACCTTGATAAGGTACTGGAGGAAGCTGCTGCTACATTTCATCCGCATGTAAAGTTTGTTCGAGTTGAATGCCC AAGTATCCTGGATTTTGCCTCACAAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGAACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCACGAAGTACTCGGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCATGTATGGATTCCGGGAATATTTTAAGAAGCACGGATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTGTGATGAAACATGCATAGTTAGTTAACATACTATGAATGTACGTGAATGCACGTTCAGCCTGTACTAGAATACTTNCCGTTCAAAGCC TTTCTGTAaaaaaaaaa                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB096359             [                                                                                                                                                                                                                                                                                                                                                                                                           GTCAATTCGTGC AGCTGTTGC ATGAAGGCCGTCCAGTAGTTGTTGCCTTTACTATTAAGTGCACTTATACTCAACACCTTGATAAGGTACTGGAGGAAGCTGCTGCTACATTTCATCCGCATGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCTGGATTTTGCCTCACAAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGAACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCACGAAGTACTCGGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCATGTATGGATTCCGGGAATATTTTAAGAAGCACGGATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTGTGATGAAACATGCATAGTTAGTTAACATACTATGAATGTACGTGAATGCACGTTCAGCCTGTACTAGAATACTT TTGTTCAAAGCC TTTCTGTATGTGGCATTATCTTAAAATGCTTGCTAATCGGTTCTCATGGCAGCTATCGGTCTCCGTTGTGCTAAGATACTGTGACAGGATAGGTCTTATTATGCTGCATGCCTTTTTTGTGAGTAATGACTAGACTTTCAGATTCAGNTGTAAATTCAATGACTTATGGCTTAGCATGCCTCAACCTTCTACATNCCTTTGNTGTANGGTGCAGGGAAGCCGCCGAAGTTTTAACATATTGCTGATTGNACCCGGAGATTAGTCATGAAACAATGGCCACTGGTTATACCATCGGATTTGATGGGCGGGGGGCTTAGNATAATTTGCATGGAAAATATTATTTTCGAAATG]
[+] EMBL CB096833             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CATGTATGGATTCCGGGAATATTTTAAGAAGCACGGATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTGTGATGAAACATGCATAGTTAGTTAACATACTATGAATGTACGTGAATGCACGTTCAGCCTGTACTAGAATACTT TTGTTCAAAGCC TTTCTGTATGTGGCATTATCTTAAAATGCTT                                                                                                                                                                                                                                                                                                                                ]


>consensus_11660#0 TCGCCGCCGGAGCCCGGAAGCTAGCGCCTCGTCGACTTGGGCGGCGGCTGAAGTCAGTGG CCGAAGGAGCGGGGATTACTTGCCCGCCTCGAAGGCTCTCCGCCGGCGGGCAGGCGGGAT AGCGCGGCAGCGGCCCACGCCGGCAGATCAGGTGGGGAGAGAAGCTCCGCCGTCCGTGCC TGCGCCGGTTTCCACGAGAGCGGCGTCGCCTGTGTCCTGCTGCTGCTACCTTTGCTGCCG CATCCTCGCCGCTCTGCATCGGTGGACGTCTGGGATGGCGGACGGTTCGTTTCTTGATCG GATGGTGTCTCAACTTCGGTCGACGTGCAGGTACTACACTGGATATCCCAAGGATCTAGG GCCATCAAGAATTATACCGTTCACGTCAGAGCGTCAATTCGTGCAGCTGTTGCATGAAGG CCGTCCAGTAGTTGTTGCCTTTACTATTAAGTGCACTTATACTCAACACCTTGATAAGGT ACTGGAGGAAGCTGCTGCTACATTTCATCCGCATGTAAAGTTTGTTCGAGTTGAATGCCC AAAGTATCCTGGATTTTGCCTCACAAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATT TTACAACCCAGAACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCACGAAGTA CTCGGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCATGTATGGATTCCGGGAATATTT TAAGAAGCACGGATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTGTG ATGAAACATGCATAGTTAGTTAACATACTATGAATGTACGTGAATGCACGTTCAGCCTGT ACTAGAATACTTTTGTTCAAAGCCTTTCTGTATGTGGCATTATCTTAAAATGCTTGCTNA TCGGNTCTCATGGCAGCTATCGGGCTNCGNTGGGCTAANANACTGTGACAGGATAGGTCT TATTATGCTGCATGCCTTTTTTGTGAGTAATGACTAGACTTTCAGATTCAGNTGTAAATT CAATGACTTATGGCTTAGCATGCCTCAACCTTCTACATNCCTTTGNTGTANGGTGCAGGG AAGCCGCCGAAGTTTTAACATATTGCTGATTGNACCCGGAGATTAGTCATGAAACAATGG CCACTGGTTATACCATCGGATTTGATGGGCGGGGGGCTTAGNATAATTTGCATGGAAAAT ATTATTTTCGAAATG



consensusID : consensus_11660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 979
fasta sequence
                              [CTTTCCACCTCTCTTTCCCTCTCGTTCGCCGCCGGAAGCTAGCGCCGCCTCGACTTCTCCGGCGGCTGAAGTCAGTGGCCGAAGGAGCGGCGGGGTGTTTTCCCGCCTCGAAAGCTCACCGCCGGCAGATCAGGCGGGAGAGAAGGCAACCGCCGTCGCCTCGGGAGCTCCGCGAGACGATCTCCGATGTCCGTGCCCTCCGTCAGTCTCCTCTTTCCCTCGTCGCTCCCGTCCACGCGAGCGGCGCCGCCTGTATCCTGCTGCTTCCTCGCTGCCGCATCCTCGCCCGTGACCACCCTTCTGCATCGGTGAATGTCTGGGATGGCGGATGGGTCATTTCTTGATCGGATGGTGTCTCAACTTCGGTCAGCATGCAGGTACTACACTGGATATCCCAAGGATCTCGGGCCATCAAGAATTATACCATTCACGTCAGAGCGTCAATTCGTGCAGCTGTTGCATGAAGGCCGTCCAGTAGTTGTTGCCTTTACCATTAAGTGCACTTATACTCATCACCTTGACAAGGTACTGGAGGAGGCTGCTGCTACATTTCATCCACACGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCCGGATTTTGCCTCACGAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGAACAGGCTGCTAGCCCAGGAAAGGCGGTGGACCCTAATGTCACAAAGTACTCAGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCGTGTATGGATTCCGGGAATACTTTAAGAAGCACGGATTCAAGTATTTTGAAACAAATTAGATCAACTATTGAAAATCGTTGTGATGAAACATGATACTAGTTAACAAACCATCTTTAGGACGTTCGTTCCGCCTATACTAGAACGCTCCTGTTAAAAGCTTGTCTGTATGTGCCTATGTGGCATTACCGTAAAATGCTTGCTAATCGGTTCTCAATGAAAGATGGCCAGGCAACT]

[+] EMBL AK108156             [CTTTCCACCTCTCTTTCCCTCTCGTTCGCCGCCGGAAGCTAGCGCCGCCTCGACTTCTCCGGCGGCTGAAGTCAGTGGCCGAAGGAGCGGCGGGGTGTTTTCCCGCCTCGAAAGCTCACCGCCGGCAGATCAGGCGGGAGAGAAGGCAACCGCCGTCGCCTCGGGAGCTCCGCGAGACGATCTCCGATGTCCGTGCCCTCCGTCAGTCTCCTCTTTCCCTCGTCGCTCCCGTCCACGCGAGCGGCGCCGCCTGTATCCTGCTGCTTCCTCGCTGCCGCATCCTCGCCCGTGACCACCCTTCTGCATCGGTGAATGTCTGGGATGGCGGATGGGTCATTTCTTGATCGGATGGTGTCTCAACTTCGGTCAGCATGCAGGTACTACACTGGATATCCCAAGGATCTCGGGCCATCAAGAATTATACCATTCACGTCAGAGCGTCAATTCGTGCAGCTGTTGCATGAAGGCCGTCCAGTAGTTGTTGCCTTTACCATTAAGTGCACTTATACTCATCACCTTGACAAGGTACTGGAGGAGGCTGCTGCTACATTTCATCCACACGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCCGGATTTTGCCTCACGAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGAACAGGCTGCTAGCCCAGGAAAGGCGGTGGACCCTAATGTCACAAAGTACTCAGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCGTGTATGGATTCCGGGAATACTTTAAGAAGCACGGATTCAAGTATTTTGAAACAAATTAGATCAACTATTGAAAATCGTTGTGATGAAACATGATACTAGTTAACAAACCATCTTTAGGACGTTCGTTCCGCCTATACTAGAACGCTCCTGTTAAAAGCTTGTCTGTATGTGCCTATGTGGCATTACCGTAAAATGCTTGCTAATCGGTTCTCAATGAAAGATGGCCAGGCAACT]


>consensus_11660#1 CTTTCCACCTCTCTTTCCCTCTCGTTCGCCGCCGGAAGCTAGCGCCGCCTCGACTTCTCC GGCGGCTGAAGTCAGTGGCCGAAGGAGCGGCGGGGTGTTTTCCCGCCTCGAAAGCTCACC GCCGGCAGATCAGGCGGGAGAGAAGGCAACCGCCGTCGCCTCGGGAGCTCCGCGAGACGA TCTCCGATGTCCGTGCCCTCCGTCAGTCTCCTCTTTCCCTCGTCGCTCCCGTCCACGCGA GCGGCGCCGCCTGTATCCTGCTGCTTCCTCGCTGCCGCATCCTCGCCCGTGACCACCCTT CTGCATCGGTGAATGTCTGGGATGGCGGATGGGTCATTTCTTGATCGGATGGTGTCTCAA CTTCGGTCAGCATGCAGGTACTACACTGGATATCCCAAGGATCTCGGGCCATCAAGAATT ATACCATTCACGTCAGAGCGTCAATTCGTGCAGCTGTTGCATGAAGGCCGTCCAGTAGTT GTTGCCTTTACCATTAAGTGCACTTATACTCATCACCTTGACAAGGTACTGGAGGAGGCT GCTGCTACATTTCATCCACACGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCCGGA TTTTGCCTCACGAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGAA CAGGCTGCTAGCCCAGGAAAGGCGGTGGACCCTAATGTCACAAAGTACTCAGTGAAAGTT CTCCCTTTCAACTATGACCAGAGCGTGTATGGATTCCGGGAATACTTTAAGAAGCACGGA TTCAAGTATTTTGAAACAAATTAGATCAACTATTGAAAATCGTTGTGATGAAACATGATA CTAGTTAACAAACCATCTTTAGGACGTTCGTTCCGCCTATACTAGAACGCTCCTGTTAAA AGCTTGTCTGTATGTGCCTATGTGGCATTACCGTAAAATGCTTGCTAATCGGTTCTCAAT GAAAGATGGCCAGGCAACT



consensusID : consensus_11660#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence
                              [TGCTGCTACATTTCNTCCGCATGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCTGGATTTTGCCNCCCAAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGAACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCNCGAAGTACNCGGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCATGTATGGATTNNGGGAATATTTTAANAAGCNCGGATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTNAAANNAAACATGCATAGTTAGTTAACATACTATGAATGTACGGTGAATGCACGTTCAGCCTGTACTAGAANACTTTTGTTCAAAGCCTTTCTGTATGTGGCNTTNTNTTNAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU172751             [TGCTGCTACATTTCNTCCGCATGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCTGGATTTTGCCNCCCAAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGAACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCNCGAAGTACNCGGTGAAAGTTCTCCCTTTCAACTATGACCAGAGCATGTATGGATTNNGGGAATATTTTAANAAGCNCGGATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTNAAANNAAACATGCATAGTTAGTTAACATACTATGAATGTACGGTGAATGCACGTTCAGCCTGTACTAGAANACTTTTGTTCAAAGCCTTTCTGTATGTGGCNTTNTNTTNAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11660#2 TGCTGCTACATTTCNTCCGCATGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCTGG ATTTTGCCNCCCAAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAGA ACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCNCGAAGTACNCGGTGAAAGT TCTCCCTTTCAACTATGACCAGAGCATGTATGGATTNNGGGAATATTTTAANAAGCNCGG ATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTNAAANNAAACATGCA TAGTTAGTTAACATACTATGAATGTACGGTGAATGCACGTTCAGCCTGTACTAGAANACT TTTGTTCAAAGCCTTTCTGTATGTGGCNTTNTNTTNAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11660#0      ------------------TCGCCGCCGGAGCCCGGAAGCTAGCGCCTCGTCGACTTGGGC 42
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      CTTTCCACCTCTCTTTCCCTCTCGTTCGCCGCCGGAAGCTAGCGCCGCCTCGACTTCTCC 60
                                                                                   

consensus_11660#0      GGCGGCTGAAGTCAGTGGCCGAAGGAGCGG-GGATTACTTGCCCGCCTCGAAGGCTCTCC 101
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      GGCGGCTGAAGTCAGTGGCCGAAGGAGCGGCGGGGTGTTTTCCCGCCTCGAAAGCTCACC 120
                                                                                   

consensus_11660#0      GCCGGCGGGCAGGCGGGATAGCGCGGCAGCGGCCCACGCCGGCAGATCAGGTGGGGAGAG 161
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      GCCGGCAGATCAGGCGGGAGAGAAGGCAACCGCCGTCGCCTCGGGAGCT--CCGCGAGAC 178
                                                                                   

consensus_11660#0      AAGCTCCGCCGTCCGTGCCTGC------------------------GCCGGTTTCCACGA 197
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      GATCTCCGATGTCCGTGCCCTCCGTCAGTCTCCTCTTTCCCTCGTCGCTCCCGTCCACGC 238
                                                                                   

consensus_11660#0      GAGCGGCGTCGCCTGTGTCCTGCTGCTGCTACCTT------TGCTGCCGCATCCTCGCCG 251
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      GAGCGGCGCCGCCTGTATCCTGCTGCTTCCTCGCTGCCGCATCCTCGCCCGTGACCACCC 298
                                                                                   

consensus_11660#0      CTCTGCATCGGTGGACGTCTGGGATGGCGGACGGTTCGTTTCTTGATCGGATGGTGTCTC 311
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      TTCTGCATCGGTGAATGTCTGGGATGGCGGATGGGTCATTTCTTGATCGGATGGTGTCTC 358
                                                                                   

consensus_11660#0      AACTTCGGTCGACGTGCAGGTACTACACTGGATATCCCAAGGATCTAGGGCCATCAAGAA 371
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      AACTTCGGTCAGCATGCAGGTACTACACTGGATATCCCAAGGATCTCGGGCCATCAAGAA 418
                                                                                   

consensus_11660#0      TTATACCGTTCACGTCAGAGCGTCAATTCGTGCAGCTGTTGCATGAAGGCCGTCCAGTAG 431
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      TTATACCATTCACGTCAGAGCGTCAATTCGTGCAGCTGTTGCATGAAGGCCGTCCAGTAG 478
                                                                                   

consensus_11660#0      TTGTTGCCTTTACTATTAAGTGCACTTATACTCAACACCTTGATAAGGTACTGGAGGAAG 491
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      TTGTTGCCTTTACCATTAAGTGCACTTATACTCATCACCTTGACAAGGTACTGGAGGAGG 538
                                                                                   

consensus_11660#0      CTGCTGCTACATTTCATCCGCATGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCTG 551
consensus_11660#2      -TGCTGCTACATTTCNTCCGCATGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCTG 59
consensus_11660#1      CTGCTGCTACATTTCATCCACACGTAAAGTTTGTTCGAGTTGAATGCCCAAAGTATCCCG 598
                        ************** *** ** *********************************** *

consensus_11660#0      GATTTTGCCTCACAAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAG 611
consensus_11660#2      GATTTTGCCNCCCAAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAG 119
consensus_11660#1      GATTTTGCCTCACGAGGCAAAAGAATGAGTATCCGTTTATTGAAGTATTTTACAACCCAG 658
                       ********* * * **********************************************

consensus_11660#0      AACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCACGAAGTACTCGGTGAAAG 671
consensus_11660#2      AACAGGCTGCTAGCCCAGGAAAGGTGGTGGACCCTAATGTCNCGAAGTACNCGGTGAAAG 179
consensus_11660#1      AACAGGCTGCTAGCCCAGGAAAGGCGGTGGACCCTAATGTCACAAAGTACTCAGTGAAAG 718
                       ************************ **************** * ****** * *******

consensus_11660#0      TTCTCCCTTTCAACTATGACCAGAGCATGTATGGATTCCGGGAATATTTTAAGAAGCACG 731
consensus_11660#2      TTCTCCCTTTCAACTATGACCAGAGCATGTATGGATTNNGGGAATATTTTAANAAGCNCG 239
consensus_11660#1      TTCTCCCTTTCAACTATGACCAGAGCGTGTATGGATTCCGGGAATACTTTAAGAAGCACG 778
                       ************************** **********  ******* ***** **** **

consensus_11660#0      GATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTGTGATGAAACATGC 791
consensus_11660#2      GATTCAAGTATTTTGAAACAAACTAGGTCAACTATTGAAAATCGTTNAAANNAAACATGC 299
consensus_11660#1      GATTCAAGTATTTTGAAACAAATTAGATCAACTATTGAAAATCGTTGTGATGAAACATG- 837
                       ********************** *** *******************   *  ******* 

consensus_11660#0      ATAGTTAGTTAACATACTATGAATGTACG-TGAATGCACGTTCAGCCTGTACTAGAATAC 850
consensus_11660#2      ATAGTTAGTTAACATACTATGAATGTACGGTGAATGCACGTTCAGCCTGTACTAGAANAC 359
consensus_11660#1      ATA-CTAGTTAACAAACCATCTTTA------GGACGTTCGTTCCGCCTATACTAGAACGC 890
                       ***  ********* ** **   *       * * *  ***** **** ********  *

consensus_11660#0      TTTTGTTCAAAGCCTTTCTGTATGTG--------GCATTATCTTAAAATGCTTGCTNATC 902
consensus_11660#2      TTTTGTTCAAAGCCTTTCTGTATGTG--------GCNTTNTNTTNAAAAAAAAAAAAAAA 411
consensus_11660#1      TCCTGTTAAAAGCTTGTCTGTATGTGCCTATGTGGCATTACCGTAAAATGCTTGCTAATC 950
                       *  **** ***** * **********        ** **    * ***         *  

consensus_11660#0      GGNTCTCATGGCAGCTATCGGGCTNCGNTGGGCTAANANACTGTGACAGGATAGGTCTTA 962
consensus_11660#2      AAAAAAAAA--------------------------------------------------- 420
consensus_11660#1      GGTTCTCAATGAAAGATGGCCAGGCAACT------------------------------- 979
                              *                                                    

consensus_11660#0      TTATGCTGCATGCCTTTTTTGTGAGTAATGACTAGACTTTCAGATTCAGNTGTAAATTCA 1022
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      ------------------------------------------------------------
                                                                                   

consensus_11660#0      ATGACTTATGGCTTAGCATGCCTCAACCTTCTACATNCCTTTGNTGTANGGTGCAGGGAA 1082
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      ------------------------------------------------------------
                                                                                   

consensus_11660#0      GCCGCCGAAGTTTTAACATATTGCTGATTGNACCCGGAGATTAGTCATGAAACAATGGCC 1142
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      ------------------------------------------------------------
                                                                                   

consensus_11660#0      ACTGGTTATACCATCGGATTTGATGGGCGGGGGGCTTAGNATAATTTGCATGGAAAATAT 1202
consensus_11660#2      ------------------------------------------------------------
consensus_11660#1      ------------------------------------------------------------
                                                                                   

consensus_11660#0      TATTTTCGAAATG 1215
consensus_11660#2      -------------
consensus_11660#1      -------------
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)