Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1167 cluster # 1167       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1167#0 length = 951 sequences # 2  

consensusID : consensus_1167#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 951
fasta sequence
                              [ACGAGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGGTCCGATGGATTCCCTCTTCTCTGTGTTTTTTTTTGATGCGATTTGGTGGTGGTGTTCGTCAGATCTGGTTGCGTAAATCTGACTATGGGGGTGGGTATGCGGTGCAAATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAACGAGCAGGCCATGCGCGACGCCATCCAAGGGATGAACGGCAAGGAGCTCGACGGGCGCAACATCACCGTCAACGAAGCCCAGTCGCGCCGCTCCCGAAGCGGAAGCGGCGGTGGCTACTGCCACCCCGGCGGAAGCGGAAGCTACCGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGTGAAAGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGTGGTGGCGGCGGCTACGGCGGCGGGTACGGCAGCCGCGGCGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGA---ACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTC--GTTTGCTTTGATCAAATG-AATGAATGAATGAATCTTAGTGTGCTCCGCTCTCGTCAAATCCA---AA--A---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSAF1894             [ACGAGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGGTCCGATGGATTCCCTCTTCTCTGTGTTTTTTTTTGATGCGATTTGGTGGTGGTGTTCGTCAGATCTGGTTGCGTAAATCTGACTATGGGGGTGGGTATGCGGTGCAAATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAACGAGCAGGCCATGCGCGACGCCATCCAAGGGATGAACGGCAAGGAGCTCGACGGGCGCAACATCACCGTCAACGAAGCCCAGTCGCGCCGCTCCCGAAGCGGAAGCGGCGGTGGCTACTGCCACCCCGGCGGAAGCGGAAGCTACCGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGTGAAAGCGGCTACCGCGGTGGCGGTGGCTACGGTGGCGGCCGTGGTGGCGGCGGCTACGGCGGCGGGTACGGCAGCCGCGGCGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGA   ACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTC  GTTTGCTTTGATCAAATG AATGAATGAATGAATCTTAGTGTGCTCCGCTCTCGTCAAATCCA   AA  A   AAAAAAAAAAA                           ]
[+] EMBL CF313975             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTACTATCTAGTTTGTGTT ACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTCGTGTTTGCTTTGATCAAATGAAATGAATGAATGAATCTTAGTGTGCTCCGCTCTCGTCAAATCCATCGAATTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_1167#0 ACGAGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGTTCGGTTCGGGTCCGGTTCGATTTCG GTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCG CTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTC CACCTACGGCGAGATCCTCGAGTCCAAGGTCCGATGGATTCCCTCTTCTCTGTGTTTTTT TTTGATGCGATTTGGTGGTGGTGTTCGTCAGATCTGGTTGCGTAAATCTGACTATGGGGG TGGGTATGCGGTGCAAATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTT CGTGACGTTCTCGAACGAGCAGGCCATGCGCGACGCCATCCAAGGGATGAACGGCAAGGA GCTCGACGGGCGCAACATCACCGTCAACGAAGCCCAGTCGCGCCGCTCCCGAAGCGGAAG CGGCGGTGGCTACTGCCACCCCGGCGGAAGCGGAAGCTACCGTGGCGGCGGCTACGGTGG TGGTGGCGGCGGCGGTGGCTACGGCCAACGCCGTGAAAGCGGCTACCGCGGTGGCGGTGG CTACGGTGGCGGCCGTGGTGGCGGCGGCTACGGCGGCGGGTACGGCAGCCGCGGCGGCGG CAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATC TATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAA CTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAG CTCGTCTCGTTTGCTTTGATCAAATGAATGAATGAATGAATCTTAGTGTGCTCCGCTCTC GTCAAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)