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Oryza sativa
cluster # 11705 cluster # 11705       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11705#0 length = 1982 sequences # 8  
consensus_11705#1 length = 309 sequences # 1  

consensusID : consensus_11705#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1982
fasta sequence
                              [GAGAGAGGGACACCTGCTCTGCTTCCGCTTCCGCTTCCCCCTCTCGAGTCTCTCGCCTCTCCCCCGTGGCCAACCCACACACCGCGGGTTGGAGGAGGAGGAGGAGGAGGTAGGGGAAATCCCCGTCGGCCGTCGGCTCGGCGCCGAATCGATCCG----CTTAGGCTTCTTCTGCTGGGCTCTTCCATGAAGCAAATGAAGTTTATAATGCACATACTAATGTTCAGTATATTATACTGAGAATCAACTTTATTCTCA-GCTGTATATACACTAGTATGCCAGCCATTGGTAGCTACTTGAAAGGATGGTGAAACGCATATGATTACCCATGATGAGCATGTGTGTTCCCTTTTTTTATTAGTGCTAAGCTGGAAATCAATAAATCCAAGATATTCAT-GGAGCATGCTACCTGTGATGATGTGCATGAGCATGCTATAAATGTATCACATGGAGAAACTGCATCAACATCAACCAGTCATCAAGATTTGCACAGTGATTCAGATGATTCACATCAGGATGATAGGCCTTCAACAAGCACACAAACCCCATCACCACAGTCTTCAGCATCAACTTCGCCCACTGCATATAACACCAGAAATTTATCCTTTCCTAGAAGAGATAGTATGTATGGTCATGGAAGAAGTATTTGGAATTCTGGTTTGTGGATCTCGTTTGAACTGGTCATATATGTAGTACAGATTGTAGCTGCTATTTTCGTCCTT-GTCTTTTCAAGAGACGAACATCCGCATGCCCCTTTATTTGCAT-GGATAATTGGTTACACAATTGGCTGCATTGCAAGCATTCCTCTTATTTGTTGGCGCTGTGCCCATCGAAACAGACCTTCGGAACAAGAACCTGAACAACCACCCGCAGCCTATCCTAATTTGACTTCCTCTCAATCATCAGAAGGACGCAATCAGCGTAGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTTCGTGTCCAAGGCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCACAGCACTTTGTCAGATTCTCAGGAAGCTCCCAATATGTATAGGCTATGCTTAGCATTCCTTGCACTTAGTTGTGTTGGGTATGCTATTCCCTTCGTCATGTGTGCAGCCATATGCTGCTGCTTTCCATGCTTAATTTCTCTTCTGCGCCTTCAAGAGGATTTGGGTCATACTAGAGGAGCTACTCAAGAACTAATTGATGCACTGCCAACCTACAAATTCAAGCCAAAACGAAGCAAAATGTGGGTTGACCATGCTTCAAGCTCAGAGAATCTTAGCGAGGGTGGCATCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCTGTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAGCTTCCTTGCACCCACTTCTTTCATGTGCAATGTGTCGATAAATGGCTCAAGATAAATGCAGTGTGCCCACTCTGCAAGACCGAGATTGGGGGTGTGGTTCGATCATTTTTTGGCTTGCCCTTTGGTCGCCGACGTGTTGATAGGATGGCAGGAAGAGGTATAGCTAGCTCGAGATTCACTGTATAGAACACGTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCTGCTCATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGATTTGCAATGAAAGCGATAATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTGATGCTTGCAGTGACAAGTTTCTGCAGTACAGTAGAAACATAAGTATATTCTGATGTAACATTTGATGTCAAGATTGTAAATAAAGAGCACAAAGTTCACTTCGGGGGTGTATATCTGCATGTGTATGGGAAAGGAAAGCCTAATTAGTTAGTAACTTTGTAGGCATTTTATTGTGTGCAATCATTG]

[+] EMBL AK069027             [GAGAGAGGGACACCTGCTCTGCTTCCGCTTCCGCTTCCCCCTCTCGAGTCTCTCGCCTCTCCCCCGTGGCCAACCCACACACCGCGGGTTGGAGGAGGAGGAGGAGGAGGTAGGGGAAATCCCCGTCGGCCGTCGGCTCGGCGCCGAATCGATCCG    CTTAGGCTTCTTCTGCTGGGCTCTTCCATGAAGCAAATGAAGTTTATAATGCACATACTAATGTTCAGTATATTATACTGAGAATCAACTTTATTCTCA GCTGTATATACACTAGTATGCCAGCCATTGGTAGCTACTTGAAAGGATGGTGAAACGCATATGATTACCCATGATGAGCATGTGTGTTCCCTTTTTTTATTAGTGCTAAGCTGGAAATCAATAAATCCAAGATATTCAT GGAGCATGCTACCTGTGATGATGTGCATGAGCATGCTATAAATGTATCACATGGAGAAACTGCATCAACATCAACCAGTCATCAAGATTTGCACAGTGATTCAGATGATTCACATCAGGATGATAGGCCTTCAACAAGCACACAAACCCCATCACCACAGTCTTCAGCATCAACTTCGCCCACTGCATATAACACCAGAAATTTATCCTTTCCTAGAAGAGATAGTATGTATGGTCATGGAAGAAGTATTTGGAATTCTGGTTTGTGGATCTCGTTTGAACTGGTCATATATGTAGTACAGATTGTAGCTGCTATTTTCGTCCTT GTCTTTTCAAGAGACGAACATCCGCATGCCCCTTTATTTGCAT GGATAATTGGTTACACAATTGGCTGCATTGCAAGCATTCCTCTTATTTGTTGGCGCTGTGCCCATCGAAACAGACCTTCGGAACAAGAACCTGAACAACCACCCGCAGCCTATCCTAATTTGACTTCCTCTCAATCATCAGAAGGACGCAATCAGCGTAGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTTCGTGTCCAAGGCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCACAGCACTTTGTCAGATTCTCAGGAAGCTCCCAATATGTATAGGCTATGCTTAGCATTCCTTGCACTTAGTTGTGTTGGGTATGCTATTCCCTTCGTCATGTGTGCAGCCATATGCTGCTGCTTTCCATGCTTAATTTCTCTTCTGCGCCTTCAAGAGGATTTGGGTCATACTAGAGGAGCTACTCAAGAACTAATTGATGCACTGCCAACCTACAAATTCAAGCCAAAACGAAGCAAAATGTGGGTTGACCATGCTTCAAGCTCAGAGAATCTTAGCGAGGGTGGCATCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCTGTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAGCTTCCTTGCACCCACTTCTTTCATGTGCAATGTGTCGATAAATGGCTCAAGATAAATGCAGTGTGCCCACTCTGCAAGACCGAGATTGGGGGTGTGGTTCGATCATTTTTTAGCTTGCCCTTTGGTCGCCGACGTGTTGATAGGATGGCAGGAAGAGGTATAGCTAGCTCGAGATTCACTGTATAGAACACGTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCTGCTCATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGATTTGCAATGAAAGCGATAATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTGATGCTTGCAGTGACAAGTTTCTGCAGTACAGTAGAAACATAAGTATATTCTGATGTAACATTTGATGTCAAGATTGTAAATAAAGAGCACAAAGTTCACTTCGGGGGTGTATATCTGCATGTGTATGGGAAAGGAAAGCCTAATTAGTTAGTAACTTTGTAGGCATTTTATTGTGTGCAATCATTG]
[+] EMBL C26828               [                                    CCCCCTCTCGAGTCTCTCGCCTCTCCCCCGTGGCCAACCCACACACCGCGGGTTGGAGGAGGAGGAGGAGGAGGTAGGGGAAATCCCCGTCGGCCGTCGGCTCGGCGCCGAATCGATCCG    CTTAGGCTTCTTCTGCTGGGCTCTTCCATGAAGCAAATGAAGTTTATAATGCACATACTAATGTTCAGTATATTATACTGAGAATCAACTTTATTCTCA GCTGTATATACACTAGTATGCCAGCCATTGGTAGCTACTTGAAAGGATGGTGAAACGCATATGATTACCCATGATGAGCATGTGTGTTCCCTTTTTTTATTAGTGCTAAGCTGGAAATCAATAAATCCAAGATATTCATGGGAGCATGCTACCTGTGATGATGTGCATGAGCATGCTATAAATGTATCACATGGNGNAACTGCATCAACATCAACCAGTCATCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BF430594             [                                                         TCT CCCCGTGGCCAACCCACACACCGCGGGTTGGAGGAGGAGGAGGAGGAGGTAGGGGAAATCCCCGTCGGCCGTCGGCTCGGCGCCGAATCGATCCGGTGACTTAGGCTTCTTCTGCTGGGCTCTTCCATGAAGCAAATGAAGTTTATAATGCACATACTAATGTTCAGTATATTATACTGAGAATCAACTTTATTCTCA GCTGTATATACACTAGTATGCCAGCCATTGGTAGCTACTTGAAAGGATGGTGAAACGCATATGATTACCCATGATGAGCATGTGTGTTCCCTTTTTTTATTAGTGCTAAGCTGGAAATCAATAAATCCAAGATATTCAT GGAGCATGCTACCTGTGATGATGTGCATGAGCATGCTATAAATGTATCACATGGAGAAACTGCATCAACATCAACCAGTCATCAAGATTTGCACAGTGATTCAGATGATTCACATCAGGATGATAGGCCTTCAACAAGCACACAAACCCCATCACCACAGTCTTCAGCATCAACTTCGCCCACTGCATATAACACCAGAAATTTATCCTTTCCTAGAAGAGATAGTATGTATGGTCATGGAAGAAGTATTTGGAATTCTGGGTTGTGGATCTCGTTTGAACTGGTCATATATGTAGTACAGATTGTAGCTGCTATTTTCGTCCTT GTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK120204             [                                                               CCGTGGCCAACCCACACACCGCGGGTTGGAGGAGGAGGAGGAGGAGGTAGGGGAAATCCCCGTCGGCCGTCGGCTCGGCGCCGAATCGATCCG    CTTAGGCTTCTTCTGCTGGGCTCTTCCATGAAGCAAATGAAGTTTATAATGCACATACTAATGTTCAGTATATTATACTGAGAATCAACTTTATTCTCA GCTGTATATACACTAGTATGCCAGCCATTGGTAGCTACTTGAAAGGATGGTGAAACGCATATGATTACCCATGATGAGCATGTGTGTTCCCTTTTTTTATTAGTGCTAAGCTGGAAATCAATAAATCCAAGATATTCAT GGAGCATGCTACCTGTGATGATGTGCATGAGCATGCTATAAATGTATCACATGGAGAAACTGCATCAACATCAACCAGTCATCAAGATTTGCACAGTGATTCAGATGATTCACATCAGGATGATAGGCCTTCAACAAGCACACAAACCCCATCACCACAGTCTTCAGCATCAACTTCGCCCACTGCATATAACACCAGAAATTTATCCTTTCCTAGAAGAGATAGTATGTATGGTCATGGAAGAAGTATTTGGAATTCTGGTTTGTGGATCTCGTTTGAACTGGTCATATATGTAGTACAGATTGTAGCTGCTATTTTCGTCCTT GTCTTTTCAAGAGACGAACATCCGCATGCCCCTTTATTTGCAT GGATAATTGGTTACACAATTGGCTGCATTGCAAGCATTCCTCTTATTTGTTGGCGCTGTGCCCATCGAAACAGACCTTCGGAACAAGAACCTGAACAACCACCCGCAGCCTATCCTAATTTGACTTCCTCTCAATCATCAGAAGGACGCAATCAGCGTAGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTTCGTGTCCAAGGCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCACAGCACTTTGTCAGATTCTCAGGAAGCTCCCAATATGTATAGGCTATGCTTAGCATTCCTTGCACTTAGTTGTGTTGGGTATGCTATTCCCTTCGTCATGTGTGCAGCCATATGCTGCTGCTTTCCATGCTTAATTTCTCTTCTGCGCCTTCAAGAGGATTTGGGTCATACTAGAGGAGCTACTCAAGAACTAATTGATGCACTGCCAACCTACAAATTCAAGCCAAAACGAAGCAAAATGTGGGTTGACCATGCTTCAAGCTCAGAGAATCTTAGCGAGGGTGGCATCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCTGTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAGCTTCCTTGCACCCACTTCTTTCATGTGCAATGTGTCGATAAATGGCTCAAGATAAATGCAGTGTGCCCACTCTGCAAGACCGAGATTGGGGGTGTGGTTCGATCATTTTTTGGCTTGCCCTTTGGTCGCCGACGTGTTGATAGGATGGCAGGAAGAGGTATAGCTAGCTCGAGATTCACTGTATAGAACACGTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCTGCTCATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGATTTGCAATGAAAGCGATAATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTGATGCTTGCAGTGACAAGTTTCTGCAGTACAGTAGAAACATAAGTATATTCTGATGTAACATTTGATGTCAAGATTGTAAATAAAGAGCACAA                                                                                              ]
[+] EMBL CB666903             [                                                                                           GAGGAGGAGGAGGAGGAGGTAGGGGAAATCCCCGTCGGCCGTCGGCTCGGCGCCGAATCGATCCG    CTTAAGCTTCTTCTGCTGGGCTCTTCCATGAAGCAAATGAAGTTTATAATGCACATACTAATGTTCAGTATATTATACTGAGAATCAACTTTATTCTCAGGCTGTATATACACTAGTATGCCAGCCATTGGTAGCTACTTGAAAGGATGGTGAAACGCATATGATTACCCATGATGAGCATGTGTGTTCCCTTTTTTTATTAGCGCTAAGCTGGAAATCAATAAATCCAAGATATTCAT GGAGCATGCTACCTGTGATGATGTGCATGAGCATGCTATAAATGTATCACATGGAGAAACTGCATCAACATCAACCAGTCATCAAGATTTGCACAGTGATTCAGATGATTCACATCAGGATGATAGGCCTTCAACAAGCACACAAACCCCATCACCACAGTCTTCAGCATCAACTTCGCCCACTGCATATAACACCAAAAATTTATCCTTTCCTAGAAGAGATAGTATGTATGGTCATGGAAGAAGTATTTGGAATTCTGGTTTGTGGATCTCGTTTGAACTGGTCATATATGTAGTACAGATTGTAGCTGCTATTTTCGTCCTT GTCTTTTCAAGAGACGAACATCCGCATGCCCCTTTATTTGCAT GGATAATTGGATACACAATTGGCTGCATTGCAAGCATTCCTCTTATTTGGTGGCGCTGTGCACATCGAAACAGACCTTCGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB679034             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTCCTTAGTCTTTTCAAGAGACTAACATCCGCATGCCCCTTTATTTGCAT GGATAATTGGTTACACAATTGGCTGCATTGCAAGCATTCCTCTTATTTGTTGGCGCTGAGCCCATCGAAACAGACCTTCGGAACAAGAACCTGAACAACCACCCGCAGCCTATCCTAATTTGACTTCCTCTCAATCATCAGAAGGACGCGATCAGCGTACCACCGGTACTGTTTTGCATTTTGGATGTATCACAATTTCGTGTCCAAGGCCTATCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCACAGCACTTTGTCAGATTCTCATGAAGCTCCCAATATGTATAGGCTATGCTTAGCATTCCTTGCACTTATTTGTGTAGGGTATGCTATTCCCTTCCCCATGTGTGCATCCATATGCTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB666904             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCCCTTA TTGCATGGGATAATGGTTTACACAATTGGCTGCATTGCAAGCATTCCTCTTATTTGTTGGCGCTGTGCCCATCGAAACAGACCTTCGGAACAAGAACCTGAACAACCACCCGCAGCCTATCCTAATTTGACTTCCTCTCAATCATCAGAAGGACGCAATCAGCGTAGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTTCGTGTCCAAGGCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCACAGCACTTTGTCAGATTCTCAGGAAGCTCCCAATATGTATAGGCTATGCTTAGCATTCCTTGCACTTAGTTGTGTTGGGTATGCTATTCCCTTCGTCATGTGTGCAGCCATATGCTGCTGCTTTCCATGCTTAATTTCTCTTCTGCGCCTTCAAGAGGATTTGGGTCATACTAGAGGAGCTACTCAAGAACTAATTGATGCACTGCCAACCTACAAATTCAAGCCAAAACGAAGCAAAATGTGGGTTGACCATGCTTCAAGCTCAGAGAATCTTAGCGAGGGTGGCATCCTGGGCCCAGGAACTAAAAAGGAAAGGATTGTTTCAGCTGAAGATGCTGTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATGAGCTCCGTGAGCTTCCTTGCACCCACTTCTTTCATGTGCAATGTGTCGATAAATGGCTCAAGATAAATGCAGTGTGCCCACTCTGCAAGACCGAGATTGGGGGTGTGGTTCGATCATTTTTTGGCGTGCCCTTTGGTCGCCGACGTGTTGATAGGATGGCAGGAAGAGGT                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU166744             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTTCTTTCATGTGCAATGTGTCGATAAATGGCTCAAGATAAATGCAGTGTGCCCACTCTGCAAGACCGAGATTGGGGGTGTGGTTCGATCATTTTTTGGCTTGCCCTTTGGTCGCCGACGTGTTGATAGGATGGCAGGAAGAGGTATAGCTAGCTCGAGATTCACTGTATAGAACACGTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCTGCTCATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGATTTGCAATGAAAGCGATAATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTGATGCTTGCAGTGACAAGTTTCTGCAGTACAGTAGAAACATAAGTATATTCTGATGTAACATTTGATGTCAAGATTGTAAATAAAGAGCACAAAGTTCACTTaaaaa                                                                                ]


>consensus_11705#0 GAGAGAGGGACACCTGCTCTGCTTCCGCTTCCGCTTCCCCCTCTCGAGTCTCTCGCCTCT CCCCCGTGGCCAACCCACACACCGCGGGTTGGAGGAGGAGGAGGAGGAGGTAGGGGAAAT CCCCGTCGGCCGTCGGCTCGGCGCCGAATCGATCCGCTTAGGCTTCTTCTGCTGGGCTCT TCCATGAAGCAAATGAAGTTTATAATGCACATACTAATGTTCAGTATATTATACTGAGAA TCAACTTTATTCTCAGCTGTATATACACTAGTATGCCAGCCATTGGTAGCTACTTGAAAG GATGGTGAAACGCATATGATTACCCATGATGAGCATGTGTGTTCCCTTTTTTTATTAGTG CTAAGCTGGAAATCAATAAATCCAAGATATTCATGGAGCATGCTACCTGTGATGATGTGC ATGAGCATGCTATAAATGTATCACATGGAGAAACTGCATCAACATCAACCAGTCATCAAG ATTTGCACAGTGATTCAGATGATTCACATCAGGATGATAGGCCTTCAACAAGCACACAAA CCCCATCACCACAGTCTTCAGCATCAACTTCGCCCACTGCATATAACACCAGAAATTTAT CCTTTCCTAGAAGAGATAGTATGTATGGTCATGGAAGAAGTATTTGGAATTCTGGTTTGT GGATCTCGTTTGAACTGGTCATATATGTAGTACAGATTGTAGCTGCTATTTTCGTCCTTG TCTTTTCAAGAGACGAACATCCGCATGCCCCTTTATTTGCATGGATAATTGGTTACACAA TTGGCTGCATTGCAAGCATTCCTCTTATTTGTTGGCGCTGTGCCCATCGAAACAGACCTT CGGAACAAGAACCTGAACAACCACCCGCAGCCTATCCTAATTTGACTTCCTCTCAATCAT CAGAAGGACGCAATCAGCGTAGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTT CGTGTCCAAGGCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTG CTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCACAGCACTTTGTCAGATT CTCAGGAAGCTCCCAATATGTATAGGCTATGCTTAGCATTCCTTGCACTTAGTTGTGTTG GGTATGCTATTCCCTTCGTCATGTGTGCAGCCATATGCTGCTGCTTTCCATGCTTAATTT CTCTTCTGCGCCTTCAAGAGGATTTGGGTCATACTAGAGGAGCTACTCAAGAACTAATTG ATGCACTGCCAACCTACAAATTCAAGCCAAAACGAAGCAAAATGTGGGTTGACCATGCTT CAAGCTCAGAGAATCTTAGCGAGGGTGGCATCCTGGGCCCAGGAACTAAAAAGGAAAGGA TTGTTTCAGCTGAAGATGCTGTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATG AGCTCCGTGAGCTTCCTTGCACCCACTTCTTTCATGTGCAATGTGTCGATAAATGGCTCA AGATAAATGCAGTGTGCCCACTCTGCAAGACCGAGATTGGGGGTGTGGTTCGATCATTTT TTGGCTTGCCCTTTGGTCGCCGACGTGTTGATAGGATGGCAGGAAGAGGTATAGCTAGCT CGAGATTCACTGTATAGAACACGTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCTGCTC ATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGATTTGCAATGAAAGCGATA ATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTGATGC TTGCAGTGACAAGTTTCTGCAGTACAGTAGAAACATAAGTATATTCTGATGTAACATTTG ATGTCAAGATTGTAAATAAAGAGCACAAAGTTCACTTCGGGGGTGTATATCTGCATGTGT ATGGGAAAGGAAAGCCTAATTAGTTAGTAACTTTGTAGGCATTTTATTGTGTGCAATCAT TG



consensusID : consensus_11705#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence
                              [AGCTCGAGATTCACTGTATAGAACACGTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCTGCTCATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGATTTGCAATGAAAGCGATAATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTGATGCTTGCAGTGACAAGTTTCTGCAGTACAGTAAAAACATAAGTATATTCTGATGTAACATTTGATGTCAAGATTGTAAATAAAGAGCACAAAGTTCAAAAAAAAAAAAAAAAAACAGGAAAAAAAAAA]

[+] EMBL CA753081             [AGCTCGAGATTCACTGTATAGAACACGTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCTGCTCATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGATTTGCAATGAAAGCGATAATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTGATGCTTGCAGTGACAAGTTTCTGCAGTACAGTAAAAACATAAGTATATTCTGATGTAACATTTGATGTCAAGATTGTAAATAAAGAGCACAAAGTTCAAAAAAAAAAAAAAAAAACAGGAAAAAAAAAA]


>consensus_11705#1 AGCTCGAGATTCACTGTATAGAACACGTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCT GCTCATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGATTTGCAATGAAAGC GATAATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTG ATGCTTGCAGTGACAAGTTTCTGCAGTACAGTAAAAACATAAGTATATTCTGATGTAACA TTTGATGTCAAGATTGTAAATAAAGAGCACAAAGTTCAAAAAAAAAAAAAAAAAACAGGA AAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11705#0      GAGAGAGGGACACCTGCTCTGCTTCCGCTTCCGCTTCCCCCTCTCGAGTCTCTCGCCTCT 60
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CCCCCGTGGCCAACCCACACACCGCGGGTTGGAGGAGGAGGAGGAGGAGGTAGGGGAAAT 120
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CCCCGTCGGCCGTCGGCTCGGCGCCGAATCGATCCGCTTAGGCTTCTTCTGCTGGGCTCT 180
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      TCCATGAAGCAAATGAAGTTTATAATGCACATACTAATGTTCAGTATATTATACTGAGAA 240
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      TCAACTTTATTCTCAGCTGTATATACACTAGTATGCCAGCCATTGGTAGCTACTTGAAAG 300
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      GATGGTGAAACGCATATGATTACCCATGATGAGCATGTGTGTTCCCTTTTTTTATTAGTG 360
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CTAAGCTGGAAATCAATAAATCCAAGATATTCATGGAGCATGCTACCTGTGATGATGTGC 420
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      ATGAGCATGCTATAAATGTATCACATGGAGAAACTGCATCAACATCAACCAGTCATCAAG 480
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      ATTTGCACAGTGATTCAGATGATTCACATCAGGATGATAGGCCTTCAACAAGCACACAAA 540
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CCCCATCACCACAGTCTTCAGCATCAACTTCGCCCACTGCATATAACACCAGAAATTTAT 600
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CCTTTCCTAGAAGAGATAGTATGTATGGTCATGGAAGAAGTATTTGGAATTCTGGTTTGT 660
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      GGATCTCGTTTGAACTGGTCATATATGTAGTACAGATTGTAGCTGCTATTTTCGTCCTTG 720
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      TCTTTTCAAGAGACGAACATCCGCATGCCCCTTTATTTGCATGGATAATTGGTTACACAA 780
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      TTGGCTGCATTGCAAGCATTCCTCTTATTTGTTGGCGCTGTGCCCATCGAAACAGACCTT 840
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CGGAACAAGAACCTGAACAACCACCCGCAGCCTATCCTAATTTGACTTCCTCTCAATCAT 900
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CAGAAGGACGCAATCAGCGTAGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTT 960
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CGTGTCCAAGGCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTG 1020
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCACAGCACTTTGTCAGATT 1080
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CTCAGGAAGCTCCCAATATGTATAGGCTATGCTTAGCATTCCTTGCACTTAGTTGTGTTG 1140
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      GGTATGCTATTCCCTTCGTCATGTGTGCAGCCATATGCTGCTGCTTTCCATGCTTAATTT 1200
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CTCTTCTGCGCCTTCAAGAGGATTTGGGTCATACTAGAGGAGCTACTCAAGAACTAATTG 1260
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      ATGCACTGCCAACCTACAAATTCAAGCCAAAACGAAGCAAAATGTGGGTTGACCATGCTT 1320
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      CAAGCTCAGAGAATCTTAGCGAGGGTGGCATCCTGGGCCCAGGAACTAAAAAGGAAAGGA 1380
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      TTGTTTCAGCTGAAGATGCTGTGTGCTGCATCTGTCTTACTAAGTACGGAGATGATGATG 1440
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      AGCTCCGTGAGCTTCCTTGCACCCACTTCTTTCATGTGCAATGTGTCGATAAATGGCTCA 1500
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      AGATAAATGCAGTGTGCCCACTCTGCAAGACCGAGATTGGGGGTGTGGTTCGATCATTTT 1560
consensus_11705#1      ------------------------------------------------------------
                                                                                   

consensus_11705#0      TTGGCTTGCCCTTTGGTCGCCGACGTGTTGATAGGATGGCAGGAAGAGGTATAGCTAGCT 1620
consensus_11705#1      --------------------------------------------------------AGCT 4
                                                                               ****

consensus_11705#0      CGAGATTCACTGTATAGAACACGTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCTGCTC 1680
consensus_11705#1      CGAGATTCACTGTATAGAACACGTCTTCTTCTCTAGCATGTTTGCTTGTTTCATCTGCTC 64
                       ************************************************************

consensus_11705#0      ATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGATTTGCAATGAAAGCGATA 1740
consensus_11705#1      ATATGCACATAAAAGACGTGCTCATGGATTGTAGTTTGTTGATTTGCAATGAAAGCGATA 124
                       ************************************************************

consensus_11705#0      ATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTGATGC 1800
consensus_11705#1      ATCTGCTTTCATCACCCTTGAGTTCACCAAAGTGATGACAGAAAAGTGGAGACCTGATGC 184
                       ************************************************************

consensus_11705#0      TTGCAGTGACAAGTTTCTGCAGTACAGTAGAAACATAAGTATATTCTGATGTAACATTTG 1860
consensus_11705#1      TTGCAGTGACAAGTTTCTGCAGTACAGTAAAAACATAAGTATATTCTGATGTAACATTTG 244
                       ***************************** ******************************

consensus_11705#0      ATGTCAAGATTGTAAATAAAGAGCACAAAGTTCACTTCGGGGGTGTATATCTGCATGTGT 1920
consensus_11705#1      ATGTCAAGATTGTAAATAAAGAGCACAAAGTTCA--------AAAAAAAAAAAAAAAAAC 296
                       **********************************            * *     *     

consensus_11705#0      ATGGGAAAGGAAAGCCTAATTAGTTAGTAACTTTGTAGGCATTTTATTGTGTGCAATCAT 1980
consensus_11705#1      AGGAAAAAAAAAA----------------------------------------------- 309
                       * *  ***  ***                                               

consensus_11705#0      TG 1982
consensus_11705#1      --
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)