These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 563 fasta sequence [TTTTTTTTTTTTTGAATATGAGATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATCTAGAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATCTAATTAAGTTGGATATAGCGTA-GCAGATTTGGTTATATCA-GGC-GTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGA-GGTCCATGTCGGCGATCTTGAGGGCCTTGGGCAC-GTCGCAGCGGCGCCCGGGGATGCATTTCA-CCTCCG-CCTCCCG-CTTCACC-TGGC-AC-AGGCACC-AGTGG--TTCTT-CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCT-CCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTATAG] [-] EMBL AK107891 [TTTTTTTTTTTTTGAATATGAGATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATCTAGAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATCTAATTAAGTTGGATATAGCGTA GCAGATTTGGTTATATCA GGC GTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGA GGTCCATGTCGGCGATCTTGAGGGCCTTGGGCAC GTCGCAGCGGCGCCCGGGGATGCATTTCA CCTCCG CCTCCCG CCTCACC TGGC AC AGGCACC AGTGG TTCTT CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCT CCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACG ] [-] EMBL AU097524 [ TTTTTATCGTGAATATGAGATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATCTAGAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATCTAATTAAGTTGGATATAGCGTANGANGATTTGGTTATATCA GGC GTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGAGGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCAC GTCGCAGCGGCGCCCGGGGATGCATTTCACCCTCCGNACTCCCGNTTTCACCTTGGCAAC A GCACCAAGTGGGTTTCTTNCACCACCCC ] [+] EMBL CF291887 [ TTTTTTTGAATATGAGATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAACCATCTAGAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATCTAATTAAGTTGGATATAGCGTA GCAGATTTGGTTATATCA GGC GTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGA GGTCCATGTCGGCGATCTTGAGGGCCTTGGGCAC GTCGCAGCGGCGCCCGGGGATGCATTTCA CCTCCG CCTCCCG CTTCACC TGGC AC AGGCACC AGTGG TTCTT CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAAGTCGTCTGCGTCGCGCAGTCCT CCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCAT ] [-] EMBL AU097523 [ AAGTTGGATATAGCGTA GCAGATTT GTTATATCAGGGCNGTGCTTG TGCACCTGAGGTTTCTCATGCAGGGGA GGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACNGTCGCAGCGGCGCCCGGGGATGCATTTCA CCTCCG CCTCCCG CTTCACC TGGC AC AGGCACC AGTGG TTCTT CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCT CCTC G TCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTATAG] [-] EMBL OSR31431A [ ATGTCGGCGATCTTGAGGGCCTTGGGCAC GTCGNAGCGNCGCNCGGGGATGCATTTCA CCTCCG CCTCCCG CTTNACC TGGA ACAAGGCACC AGTGG TTCTT CACCACNCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCTNGCTTCG TCCGCNGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTATAG] [-] EMBL CA756555 [ ACC TGGC AC AGGCACC AGTGG TTCTT CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCT CCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTAAT ] [-] EMBL OSR31511A [ G TTCTT CACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTNAGGCAGTTGGTGAAGTAGGTCGTCT CGTCGCGCAGTCCT CCATC GCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTATAG] [-] EMBL CF291888 [ CCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGTCTGCGTCGCGCAGTCCT CCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCCGCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGACTCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTA ] consensusID : consensus_11720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [TTTTTTTTTTTTTTTTTTTTTANAAAATATCGGGAATATGANATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATNTANAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATNTAATTAAGTTGGATATAGCGTAGCANATTTGGTTATATCAGGCGTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGAGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACGTCGCAGCGGCGCCCGGGGATGCATTTCACCTCCGCCTCCCGCTTCACCTGGCACAGGCACCAGNGGTTCTTCACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGT] [-] EMBL AU173442 [TTTTTTTTTTTTTTTTTTTTTANAAAATATCGGGAATATGANATCCGGAGCCGACCATAATAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAATCATNTANAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGTAGGCATNTAATTAAGTTGGATATAGCGTAGCANATTTGGTTATATCAGGCGTGCTTGCTGCACCTGAGGTTTCTCATGCAGGGGAGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACGTCGCAGCGGCGCCCGGGGATGCATTTCACCTCCGCCTCCCGCTTCACCTGGCACAGGCACCAGNGGTTCTTCACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTGAAGTAGGTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11720#0 --------TTTTTTTTTTTTT------------GAATATGAGATCCGGAGCCGACCATAA 40 consensus_11720#1 TTTTTTTTTTTTTTTTTTTTTANAAAATATCGGGAATATGANATCCGGAGCCGACCATAA 60 ************* ******** ****************** consensus_11720#0 TAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAA 100 consensus_11720#1 TAATAATATATAGGACAATGAGCAGTATACATCAGGTTGGGATTGATTGCTTCAACAAAA 120 ************************************************************ consensus_11720#0 TCATCTAGAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGT 160 consensus_11720#1 TCATNTANAAAAAAAACATAGGATGCAGTAACAAACAGAGTAACATAACTTGGAGGCAGT 180 **** ** **************************************************** consensus_11720#0 AGGCATCTAATTAAGTTGGATATAGCGTAGCAGATTTGGTTATATCAGGCGTGCTTGCTG 220 consensus_11720#1 AGGCATNTAATTAAGTTGGATATAGCGTAGCANATTTGGTTATATCAGGCGTGCTTGCTG 240 ****** ************************* *************************** consensus_11720#0 CACCTGAGGTTTCTCATGCAGGGGAGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACG 280 consensus_11720#1 CACCTGAGGTTTCTCATGCAGGGGAGGTCCATGTCGGCGATCTTGAGGGCCTTGGGCACG 300 ************************************************************ consensus_11720#0 TCGCAGCGGCGCCCGGGGATGCATTTCACCTCCGCCTCCCGCTTCACCTGGCACAGGCAC 340 consensus_11720#1 TCGCAGCGGCGCCCGGGGATGCATTTCACCTCCGCCTCCCGCTTCACCTGGCACAGGCAC 360 ************************************************************ consensus_11720#0 CAGTGGTTCTTCACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTG 400 consensus_11720#1 CAGNGGTTCTTCACCACCCCGCAGCAGCCTTCCCTGATCCCGCGCCTCAGGCAGTTGGTG 420 *** ******************************************************** consensus_11720#0 AAGTAGGTCGTCTGCGTCGCGCAGTCCTCCTCCGGCTCCGCCGCGTAGTTCGCCGCCGCC 460 consensus_11720#1 AAGTAGGTCGT------------------------------------------------- 431 *********** consensus_11720#0 GCCGCCGCCATCATCAACACCGACATCACCACCACGGCCATCTTCCTCCTCATGGCCGAC 520 consensus_11720#1 ------------------------------------------------------------ consensus_11720#0 TCCATGGAGCTACACAGATCAAGATTTCAGCTACAGCTTATAG 563 consensus_11720#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||