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Oryza sativa
cluster # 11753 cluster # 11753       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11753#0 length = 1642 sequences # 4  
consensus_11753#1 length = 1362 sequences # 4  
consensus_11753#2 length = 665 sequences # 1  

consensusID : consensus_11753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1642
fasta sequence
                              [CAGACGCCGACCACCTCCTCCTCTCTAGCTTCTCCGACGACGCACTCCGGCGATCGAGCGGCCGGCAAGGAAGAAGAAGAAGAGAGAGCAGGTTGGAGAGGTCGTCCATGGCGTGGAAGGACAGCTACTTGGACCTCGTGCTGATCCCGGCGGGGATCGTGTTCCCGATCGTCTACCACGTCTGGCTGTGGCACGTCGTCCGCCGCCGCCCGCTCTCCTCCCCCGTCGGCATTAACACCGCCACCCGCCGCCTCTGGGTCTTGGGCATGATGAAGGACAACGAGAAGAAGGCGGTGCTGGTGGTGCAGTCGATGAGGAACGTGATAATGGGGTCGACGCTGATGGCGACGACGGCCATCCTCTTCTGCACCGGCGTCGCCGCCATCCTCAGCAGCACGTACACCGTCAAGAAGCCGCTCAGCGACGCCGTGTTCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTCACCCTCCTCCTCGCCTTCCTCCTCTCCTTCCTCTCCCACACCACCGCCATCTGCACCCTCAACCAGGCCACCTTCCTCCTCAACACCCTCTCTTCCTCCTCCTCCTTCGCCGCCGACATCGCCGGGCTGCCGGTGACCAAGGACTACGTCGCCGACGTGCTCGAGAGAGGATTCCTCCTCAACCTCGTCGGAAACCGGCTGTTCTACGCCGGCGTGCCGCTTCTCCTGTGGATCTTCGGCCCGGTCTTGGCTTGCCTCTGCTCCGTCGTCATGATCCCGATACTGCACAGCATCGACGTGGTTTACGTCGATGGGAGCAGCAAGGGCGAGGCCAACGCCAGAGTGGAGATGGTGTACGAGAGCGATGAGAGCGTCATGCAAGTTTGACCAATTTCGGACACGAGTCGGACTCTATAACCTGCCTACCCTCACGGAGAATATGTGGTGGTGCTCTCGTCTCGTCCTTCAAACTCGATCTTGAAGAAAAATGCGGGCAATTCTTGATCCAACAGTGACTGCACCTGTGTTGTGTGTGTCATGTTTGTGGCTTGGATTGTTTTGAGTATTCTTATTCAAGACATGTTTAGCATGGCACGGCCGGGAGAGTACTTGGTGCTGTAACAGAGACTCACTGATCGGTCAACTGTTAACGCACAGCAATGTACTGGTTACAACTGCTGTAATCTGTCAGAATAAGATGTTCTCCCCCATTGATTCACTA-----AAAAAAAAAAAAAAAAAAACTCGAGGGGGGGGCCCGGGACCTCATTTCGCGCTTATATGGGAGTCGCATTACGCCGGGCTTACTGGGCCGTGAGTTTAAAACGTTCTTACTGGGAAACCCCTGGGTGGACCCAATTAAATGCGCTTGCAGAAATGCCCTTATTGCAAGTTGGCTAATTGGTGAGAGGCCGAGCTCACGGCTTTCAAAATGTGTGGAAGCTGTTTGTGAATGGACGCGCTTGTTTTGACGTGTACAGCTCGTGCTTGTAGTACGGTAAGTGCGATACGGTGGCGTAGCCGGGGGGAGAGTTATGTTTAATGTGTTAAGTGACGTAGAAAGAGTCGGAAAGGAGGATGTGGAGGGGAGGAAGGGAGGGCGCGGGCGGGAGTAGAAAGTGTGGGTGGGATATAGAATAAGCGCAGGGGGGGAAGATAGAGGAGTTAGGGGT]

[+] EMBL AK108985             [CAGACGCCGACCACCTCCTCCTCTCTAGCTTCTCCGACGACGCACTCCGGCGATCGAGCGGCCGGCAAGGAAGAAGAAGAAGAGAGAGCAGGTTGGAGAGGTCGTCCATGGCGTGGAAGGACAGCTACTTGGACCTCGTGCTGATCCCGGCGGGGATCGTGTTCCCGATCGTCTACCACGTCTGGCTGTGGCACGTCGTCCGCCGCCGCCCGCTCTCCTCCCCCGTCGGCATTAACACCGCCACCCGCCGCCTCTGGGTCTTGGGCATGATGAAGGACAACGAGAAGAAGGCGGTGCTGGTGGTGCAGTCGATGAGGAACGTGATAATGGGGTCGACGCTGATGGCGACGACGGCCATCCTCTTCTGCACCGGCGTCGCCGCCATCCTCAGCAGCACGTACACCGTCAAGAAGCCGCTCAGCGACGCCGTGTTCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTCACCCTCCTCCTCGCCTTCCTCCTCTCCTTCCTCTCCCACACCACCGCCATCTGCACCCTCAACCAGGCCACCTTCCTCCTCAACACCCTCTCTTCCTCCTCCTCCTTCGCCGCCGACATCGCCGGGCTGCCGGTGACCAAGGACTACGTCGCCGACGTGCTCGAGAGAGGATTCCTCCTCAACCTCGTCGGAAACCGGCTGTTCTACGCCGGCGTGCCGCTTCTCCTGTGGATCTTCGGCCCGGTCTTGGCTTGCCTCTGCTCCGTCGTCATGATCCCGATACTGCACAGCATCGACGTGGTTTACGTCGATGGGAGCAGCAAGGGCGAGGCCAACGCCAGAGTGGAGATGGTGTACGAGAGCGATGAGAGCGTCATGCAAGTTTGACCAATTTCGGACACGAGTCGGACTCTATAACCTGCCTACCCTCACGGAGAATATGTGGTGGTGCTCTCGTCTCGTCCTTCAAACTCGATCTTGAAGAAAAATGCGGGCAATTCTTGATCCAACAGTGACTGCACCTGTGTTGTGTGTGTCATGTTTGTGGCTTGGATTGTTTTGAGTATTCTTATTCAAGACATGTTTAGCATGGCACGGCCGGGAGAGTACTTGGTGCTGTAACAGAGACTCACTGATCGGTCAACTGTTAACGCACAGCAATGTACTGGTTACAACTGCTGTAATCTGTCAGAATAAGATGTTCTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSR21181A            [                                    ACGACGCACTCCGNCGATCGAGCGGCCGGCAAGGAAGAAGAAGAAGAGAGAGCAGGTTGGAGAGGTCGTCCATGGCGTGGAAGGACAGCTACTTGGACCTCGTGCTGATCCCGGCGGGGATCGTGTTCCCGATCGTCTACCACGTCTGGCTGTGGCACGTCGTCCGCCGNCGNCCGCTCTCCTCCACCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BE039817             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCCGCTTCTCCTGTGGATCTTCGGCCCGGTCTTGGCTTGCCTCTGCTCCGTCGTCATGATCCCGATACTGCACAGCATCGACGTGGTTTACGTCGATGGGAGCAGCAAGGGCGAGGCCAACGCCAGAGTGGAGATGGTGTACGAGAGCGATGAGAGCGTCATGCAAGTTTGACCAATTTCGGACACGAGTCGGACTCTGTAACCTGGCTACTCTTACGGAGAATATGTGGTGGTGCTCTCGTCTCGTCCTGCAAACTCGATCTTGAAGAAAAATGCGGGCAATTCTTGATCCAACAGTGACTGCACCTGTGTTGTGTGTGTCATGTTTGTGGCTTGGATTGTTTTGAGTATTCTTATTCAAGACATGTTTAGCATGGCACGGCCGGGAGAGTACTTGGTGCTGTAACAGAGACTCACTGATCGGTCAACTGTTAACGCACAGCAATGTACTGGTTACAACTGCTGGAATCTGGCAGAATAAGATGTTCTCCCCCATTGATTCACTATTTGTAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGGCCCGGGACCTCATTTCGCGCTTATATGGGAGTCGCATTACGCCGGGCTTACTGGGCCGTGAGTTTAAAACGTTCTTACTGGGAAACCCCTGGGTGGACCCAATTAAATGCGCTTGCAGAAATGCCCTTATTGCAAGTTGGCTAATTGGTGAGAGGCCGAGCTCACGGCTTTCAAAATGTGTGGAAGCTGTTTGTGAATGGACGCGCTTGTTTTGACGTGTACAGCTCGTGCTTGTAGTACGGTAAGTGCGATACGGTGGCGTAGCCGGGGGGAGAGTTATGTTTAATGTGTTAAGTGACGTAGAAAGAGTCGGAAAGGAGGATGTGGAGGGGAGGAAGGGAGGGCGCGGGCGGGAGTAGAAAGTGTGGGTGGGATATAGAATAAGCGCAGGGGGGGAAGATAGAGGAGTTAGGGGT]
[+] EMBL AU031845             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTGCACAGCATCGACGTGGTTTACGTCGATGGGAGCAGCAAGGGCGAGGCCAACGCCAGAGTGGAGATGGTGTACGAGAGCGATGAGAGCGTCATGCAAGTTTGACCAATTTCGGACACGAGTCGGACTCTATAACCTGCCTACCCTCACGGAGAATATGTGGTGGTGCTCTCGTCTCGTCCTTCAAACTCGATCTTGAAGAAAAATGCGGGCAATTCTTGATCCAACAGTGACTGCACCTGTGTTGTGTGTGTCATGTTTGTGGCTTGGATTGTTTTGAGTATTCTTATTCAAGACATGTTTAGCATGGCACGGCCGGGAGAGTACTTGGTGCTGTAACAGAGACTCACTGATCGGTCAACTGTTAACGCACAGCAATGTACTGGTTACAACTGCTGTAATCTGTCAGAATAAGATGTTCTCCCCCATTGATTCACTA     AAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_11753#0 CAGACGCCGACCACCTCCTCCTCTCTAGCTTCTCCGACGACGCACTCCGGCGATCGAGCG GCCGGCAAGGAAGAAGAAGAAGAGAGAGCAGGTTGGAGAGGTCGTCCATGGCGTGGAAGG ACAGCTACTTGGACCTCGTGCTGATCCCGGCGGGGATCGTGTTCCCGATCGTCTACCACG TCTGGCTGTGGCACGTCGTCCGCCGCCGCCCGCTCTCCTCCCCCGTCGGCATTAACACCG CCACCCGCCGCCTCTGGGTCTTGGGCATGATGAAGGACAACGAGAAGAAGGCGGTGCTGG TGGTGCAGTCGATGAGGAACGTGATAATGGGGTCGACGCTGATGGCGACGACGGCCATCC TCTTCTGCACCGGCGTCGCCGCCATCCTCAGCAGCACGTACACCGTCAAGAAGCCGCTCA GCGACGCCGTGTTCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTCACCCTCC TCCTCGCCTTCCTCCTCTCCTTCCTCTCCCACACCACCGCCATCTGCACCCTCAACCAGG CCACCTTCCTCCTCAACACCCTCTCTTCCTCCTCCTCCTTCGCCGCCGACATCGCCGGGC TGCCGGTGACCAAGGACTACGTCGCCGACGTGCTCGAGAGAGGATTCCTCCTCAACCTCG TCGGAAACCGGCTGTTCTACGCCGGCGTGCCGCTTCTCCTGTGGATCTTCGGCCCGGTCT TGGCTTGCCTCTGCTCCGTCGTCATGATCCCGATACTGCACAGCATCGACGTGGTTTACG TCGATGGGAGCAGCAAGGGCGAGGCCAACGCCAGAGTGGAGATGGTGTACGAGAGCGATG AGAGCGTCATGCAAGTTTGACCAATTTCGGACACGAGTCGGACTCTATAACCTGCCTACC CTCACGGAGAATATGTGGTGGTGCTCTCGTCTCGTCCTTCAAACTCGATCTTGAAGAAAA ATGCGGGCAATTCTTGATCCAACAGTGACTGCACCTGTGTTGTGTGTGTCATGTTTGTGG CTTGGATTGTTTTGAGTATTCTTATTCAAGACATGTTTAGCATGGCACGGCCGGGAGAGT ACTTGGTGCTGTAACAGAGACTCACTGATCGGTCAACTGTTAACGCACAGCAATGTACTG GTTACAACTGCTGTAATCTGTCAGAATAAGATGTTCTCCCCCATTGATTCACTAAAAAAA AAAAAAAAAAAAACTCGAGGGGGGGGCCCGGGACCTCATTTCGCGCTTATATGGGAGTCG CATTACGCCGGGCTTACTGGGCCGTGAGTTTAAAACGTTCTTACTGGGAAACCCCTGGGT GGACCCAATTAAATGCGCTTGCAGAAATGCCCTTATTGCAAGTTGGCTAATTGGTGAGAG GCCGAGCTCACGGCTTTCAAAATGTGTGGAAGCTGTTTGTGAATGGACGCGCTTGTTTTG ACGTGTACAGCTCGTGCTTGTAGTACGGTAAGTGCGATACGGTGGCGTAGCCGGGGGGAG AGTTATGTTTAATGTGTTAAGTGACGTAGAAAGAGTCGGAAAGGAGGATGTGGAGGGGAG GAAGGGAGGGCGCGGGCGGGAGTAGAAAGTGTGGGTGGGATATAGAATAAGCGCAGGGGG GGAAGATAGAGGAGTTAGGGGT



consensusID : consensus_11753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1362
fasta sequence
                              [ATTCTCAATCCTAAGCAGGCACAATATATCATCACAAACTTGACAATATTATCACGTACTATATACTATCGAAGCATATATTTGTTCTGCACATATAGTAGCTAGCAATAGTAATTAGTACGTGATCTAAGAAAAGAGTGATCGATCTTCGATTTGATCGATAGTATCGTCAATCGTGTGTCCGATCCGATCCGCCATGGAGTGGAGGGACAGCTTCTTGGACCTGATCTTGATCCCTCTCAGCCTCCTCGTCCCCATGGCGTACCACGTCTGGCTGTGGCGCGCCGTCCGCCTCACCCCGCTCCGCACCGCCGCCGGCATCAACTCCGCCACCCGCCGCCTCTGGGCCATCAGCATGACCAAGGACAACGAGAAGAATGCGGTGCTGGTGGTGCAGTCGCTGCGGAACGTGATCATGGGGTCGACGCTGGTGGCGACGACGGCGATCCTCTTCTGCACGGGGATCGCGGCGGTGCTGAGCAGCACGTACACCATCAAGAAGCCGCTCAGCGACGCCGTCTTCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCCTCTTCCTCGTCGCCTTCCTCTCCCACTCCCTCGCCATCTGCTTCCTCAACGAGGCCAGCTTCCTCATCAACACCTCCCCCACCCTCCTCGCCGGCGGCGATGGCGCCGGTGACGACGGCGGCCGCCGCCTCCTCGGCCTTCCGTCGACGAGGGACTACATGGAGGAGGCGCTGGAGAAGGGGTTCACGCTCAACTTCGTCGGCAACCGCATCTTCTTCGCCGGCGTCCCGCTCCTCCTCTGGATCTTCGGCCCGCTCCTCGCCTTCCTCTCCTCCCTCGTCATGATCCCCA-TCCTCTACAACCTCGACGTCGTCAACGTCAAATCACATCGCGGCGGCGACTGCGGCTGCGGCTGCGGCAATGGGAAATCATCGGTGGACAAGAACGGCGCCGCAGCCGCCATGGATTGCACGCTTGTCTGACGAAGAAGCAAGCAAAGCAATCTTGGCTCGATCGATGATCGATCTATCTGCAGCGAGATTTGCTCCGGTCCAACAAAAAATACCTCGAGATACCGGTACCTACGGTACCTGCAGCATGCTTGTTCATGTGTGATATAAGTGCAGTGATGGTACAGTAGACTGCCACATTGGTAG-TTAATTTGGCTCTATAGCTAGTGCATATGCATGCGTGGACGAAAAAGCTAGTTTCTTGTGGATCAGCAACACGTACGTCAGTGGACGATATAAGTTGCTTCCTAGATGGTACTAGGAAATCCGTTCTTGAGTTCGTTGCATGCATATGACATGGAATCCAACAGCGCGTCTTGCTGTCATTTTTACCAAAA]

[+] EMBL BE230527             [ATTCTCAATCCTAAGCAGGCACAATATATCATCACAAACTTGACAATATTATCACGTACTATATACTATCGAAGCATATATTTGTTCTGCACATATAGTAGCTAGCAATAGTAATTAGTACGTGATCTAAGAAAAGAGTGATCGATCTTCGATTTGATCGATAGTATCGTCAATCGTGTGTCCGATCCGATCCGCCATGGAGTGGAGGGACAGCTTCTTGGACCTGATCTTGATCCCTCTCAGCCTCCTCGTCCCCATGGCGTACCACGTCTGGCTGTGGCGCGCCGTCCGCCTCACCCCGCTCCGCACCGCCGCCGGCATCAACTCCGCCACCCGCCGCCTCTGGGCCATCAGCATGACCAAGGACAACGAGAAGAATGCGGTGCTGGTGGTGCAGTCGCTGCGGAACGTGATCATGGGGTCGACGCTGGTGGCGACGACGGCGATCCTCTTCTGCACGGGGATCGCGGCGGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BE230032             [ATTCTCAATCCTAAGCAGGCACAATATATCATCACAAACTTGACAATATTATCACG CCTATATACTATCGAAGCATATATTTGTTCTGCACATATAGTAGCTAGCAATAGTAATTAGTACGTGATCTAAGAAAAGAGTGATCGATCTTCGATTTGATCGATAGTATCGTCAATCGTGTGTCCGATCCGATCCGCCATGGAGTGGAGGGACAGCTTCTTGGACCTGATCTTGATCCCTCTCATCCTCCTCGTCCCCATGGCGTACCACGTCTGGCTGTGGCGCGCCGTCCGCCTCACCCCGCTCCGGACCG CGCCGGCATCAACTCCG CACCCG CG CTCTGGGCCATCAGCATGACCAAGGACAACGAGAAGAATGCGGTGCTGGTGGTGCAATCNCTGCGGAACGTGATCATGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK107667             [                   CACAATATATCATCACAAACTTGACAATATTATCACGTACTATATACTATCGAAGCATATATTTGTTCTGCACATATAGTAGCTAGCAATAGTAATTAGTACGTGATCTAAGAAAAGAGTGATCGATCTTCGATTTGATCGATAGTATCGTCAATCGTGTGTCCGATCCGATCCGCCATGGAGTGGAGGGACAGCTTCTTGGACTTGATCTTGATCCCTCTCAGCCTCCTCGTCCCCATGGCGTACCACGTCTGGCTGTGGCGCGCCGTCCGCCTCACCCCGCTCCGCACCGCCGCCGGCATCAACTCCGCCACCCGCCGCCTCTGGGCCATCAGCATGACCAAGGACAACGAGAAGAAGGCGGTGCTGGTGGTGCAGTCGCTGCGGAACGTGATCATGGGGTCGACGCTGGTGGCGACGACGGCGATCCTCTTCTGCACGGGGATCGCGGCGGTGCTGAGCAGCACGTACACCATCAAGAAGCCGCTCAGCGACGCCGTCTTCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCCTCTTCCTCGTCGCCTTCCTCTCCCACTCCCTCGCCATCTGCTTCCTCAACGAGGCCAGCTTCCTCATCAACACCTCCCCCACCCTCCTCGCCGGCGGCGATGGCGCCGGTGACGACGGCGGCCGCCGCCTCCTCGGCCTTCCGTCGACGAGGGACTACATGGAGGAGGCGCTGGAGAAGGGGTTCACGCTCAACTTCGTCGGCAACCGCATCTTCTTCGCCGGCGTCCCGCTCCTCCTCTGGATCTTCGGCCCGCTCCTCGCCTTCCTCTCCTCCCTCGTCATGATCCCCA TCCTCTACAACCTCGACGTCGTCAACGTCAAATCACATCGCGGCGGCGACTGCGGCTGCGGCTGCGGCAATGGGAAATCATCGGTGGACAAGAACGGCGCCGCAGCCGCCATGGATTGCACGCTTGTCTGACGAAGAAGCAAGCAAAGCAATCTTGGCTCGATCGATGATCGATCTATCTGCAGCGAGATTTGCTCCGGTCCAACAAAAAATACCTCGAGATACCGGTACCTACGGTACCTGCAGCATGCTTGTTCATGTGTGATATAAGTGCAGTGATGGTACAGTAGACTGCCACATTGGTAG TTAATTTGGCTCTATAGCTAGTGCATATGCATGCGTGGACGAAAAAGCTAGTTTCTTGTGGATCAGCAACACGTACGTCAGTGGACGATATAAGTTGCTTCCTAGATGGTACTAGGAAATCCGTTCTTGAGTTCGTTGCATGCATATGACATGGAATCCAACAGCGCGTCTTGCTGT              ]
[+] EMBL BI802517             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCATGATCCCCAGTCCTCTACAACCTCGACGTCGTCAACGTCAAATCACATCGC GCGGCGACTGCGGCTGCGGCTGCGGCAATGGGAAATCATCGGTGGACAAGAACGGCGCCGCAGCCGCCATGGATTGCACGCTTGTCTGACGAAGAAGCAAGCAAAGCAATCTTGGCTCGATCGATGATCGATCTATCTGCAGCGAGATTTGCTCCGGTCCAACAAAAAATAACTCGAGATACCGGTAGCTACGGTACCTGCAGCATGCTTGTTCATGTGTGATATAAGTGTAGTGATGGTACAGTAGACTGCCACATTGGTAGCTTAATTTGGCTCTATAGCTAGTGCATATGCATGCGTGGACGAAAAAGCTAGTTTCTTGTGGATCAGCAACACGTACGTCAGTGGACGATATAAGTTGCTTCCTAGATGGTACTAGGAAATCCGTTCTTGAGTTCGTTGCATGCATATGACATGGAATCC ACAGCGCGTCTTGCTGTCATTTTTACCAAAA]


>consensus_11753#1 ATTCTCAATCCTAAGCAGGCACAATATATCATCACAAACTTGACAATATTATCACGTACT ATATACTATCGAAGCATATATTTGTTCTGCACATATAGTAGCTAGCAATAGTAATTAGTA CGTGATCTAAGAAAAGAGTGATCGATCTTCGATTTGATCGATAGTATCGTCAATCGTGTG TCCGATCCGATCCGCCATGGAGTGGAGGGACAGCTTCTTGGACCTGATCTTGATCCCTCT CAGCCTCCTCGTCCCCATGGCGTACCACGTCTGGCTGTGGCGCGCCGTCCGCCTCACCCC GCTCCGCACCGCCGCCGGCATCAACTCCGCCACCCGCCGCCTCTGGGCCATCAGCATGAC CAAGGACAACGAGAAGAATGCGGTGCTGGTGGTGCAGTCGCTGCGGAACGTGATCATGGG GTCGACGCTGGTGGCGACGACGGCGATCCTCTTCTGCACGGGGATCGCGGCGGTGCTGAG CAGCACGTACACCATCAAGAAGCCGCTCAGCGACGCCGTCTTCGGCGCCCACGGCGAGTA CATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCCTCTTCCTCGTCGCCTTCCTCTCCCA CTCCCTCGCCATCTGCTTCCTCAACGAGGCCAGCTTCCTCATCAACACCTCCCCCACCCT CCTCGCCGGCGGCGATGGCGCCGGTGACGACGGCGGCCGCCGCCTCCTCGGCCTTCCGTC GACGAGGGACTACATGGAGGAGGCGCTGGAGAAGGGGTTCACGCTCAACTTCGTCGGCAA CCGCATCTTCTTCGCCGGCGTCCCGCTCCTCCTCTGGATCTTCGGCCCGCTCCTCGCCTT CCTCTCCTCCCTCGTCATGATCCCCATCCTCTACAACCTCGACGTCGTCAACGTCAAATC ACATCGCGGCGGCGACTGCGGCTGCGGCTGCGGCAATGGGAAATCATCGGTGGACAAGAA CGGCGCCGCAGCCGCCATGGATTGCACGCTTGTCTGACGAAGAAGCAAGCAAAGCAATCT TGGCTCGATCGATGATCGATCTATCTGCAGCGAGATTTGCTCCGGTCCAACAAAAAATAC CTCGAGATACCGGTACCTACGGTACCTGCAGCATGCTTGTTCATGTGTGATATAAGTGCA GTGATGGTACAGTAGACTGCCACATTGGTAGTTAATTTGGCTCTATAGCTAGTGCATATG CATGCGTGGACGAAAAAGCTAGTTTCTTGTGGATCAGCAACACGTACGTCAGTGGACGAT ATAAGTTGCTTCCTAGATGGTACTAGGAAATCCGTTCTTGAGTTCGTTGCATGCATATGA CATGGAATCCAACAGCGCGTCTTGCTGTCATTTTTACCAAAA



consensusID : consensus_11753#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence
                              [AGGAANTATGCCCATGCATAAACNCATATAGTACTCCTAATAAGCAACANCTTGAACGGACANCANCTTTGGTAAAAATGACAGCAAAGACGCGCTGTTGGATTCCATGTCATATGCATGCANCGAACTCAAGANCGGATTTCNTAGTACCATCTAGGAAGCAACTTATATCGTCCACTGACGTACGTGTTGCTGATCCACAAGAAACTAGCTTTTTCGTCCACGCATGCATATGCACTAGCTATAGAGCCAAATTAACTACCAATGTGGCAGTCTACTGTACCATCACTACACTTATATCACACATGAACAAGCATGCTGCAGGTACCGTAGCTACCGGTATCTCGAGTTATTTTTTGTTGGACCGGAGCAAATCTCGCTGCAGATAGATCAGATCATCGATCGAGCCAAGATTGCTTTGCTTGCTTCTTCGTCAGACAAGCGTGCAATCCATGGCGGCTGCGGCGCCGTTCTTGTCCACCGATGATTTCCCATTGCCGCAGCCGCAGCCGCAGTCGCCGCCGCTCAGCGACGCCGTCTTCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCCTCTTCCTCGTCGCCTTCCTCTCCCACTCCCTCGCCATCTGCTTCCTCAACGAGGCCAGCTTCCTCATCAAC]

[-] EMBL CA766322             [AGGAANTATGCCCATGCATAAACNCATATAGTACTCCTAATAAGCAACANCTTGAACGGACANCANCTTTGGTAAAAATGACAGCAAAGACGCGCTGTTGGATTCCATGTCATATGCATGCANCGAACTCAAGANCGGATTTCNTAGTACCATCTAGGAAGCAACTTATATCGTCCACTGACGTACGTGTTGCTGATCCACAAGAAACTAGCTTTTTCGTCCACGCATGCATATGCACTAGCTATAGAGCCAAATTAACTACCAATGTGGCAGTCTACTGTACCATCACTACACTTATATCACACATGAACAAGCATGCTGCAGGTACCGTAGCTACCGGTATCTCGAGTTATTTTTTGTTGGACCGGAGCAAATCTCGCTGCAGATAGATCAGATCATCGATCGAGCCAAGATTGCTTTGCTTGCTTCTTCGTCAGACAAGCGTGCAATCCATGGCGGCTGCGGCGCCGTTCTTGTCCACCGATGATTTCCCATTGCCGCAGCCGCAGCCGCAGTCGCCGCCGCTCAGCGACGCCGTCTTCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCCTCTTCCTCGTCGCCTTCCTCTCCCACTCCCTCGCCATCTGCTTCCTCAACGAGGCCAGCTTCCTCATCAAC]


>consensus_11753#2 AGGAANTATGCCCATGCATAAACNCATATAGTACTCCTAATAAGCAACANCTTGAACGGA CANCANCTTTGGTAAAAATGACAGCAAAGACGCGCTGTTGGATTCCATGTCATATGCATG CANCGAACTCAAGANCGGATTTCNTAGTACCATCTAGGAAGCAACTTATATCGTCCACTG ACGTACGTGTTGCTGATCCACAAGAAACTAGCTTTTTCGTCCACGCATGCATATGCACTA GCTATAGAGCCAAATTAACTACCAATGTGGCAGTCTACTGTACCATCACTACACTTATAT CACACATGAACAAGCATGCTGCAGGTACCGTAGCTACCGGTATCTCGAGTTATTTTTTGT TGGACCGGAGCAAATCTCGCTGCAGATAGATCAGATCATCGATCGAGCCAAGATTGCTTT GCTTGCTTCTTCGTCAGACAAGCGTGCAATCCATGGCGGCTGCGGCGCCGTTCTTGTCCA CCGATGATTTCCCATTGCCGCAGCCGCAGCCGCAGTCGCCGCCGCTCAGCGACGCCGTCT TCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCCTCTTCC TCGTCGCCTTCCTCTCCCACTCCCTCGCCATCTGCTTCCTCAACGAGGCCAGCTTCCTCA TCAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11753#0      ------------------------------------------------------------
consensus_11753#1      ATTCTCAATCCTAAGCAGGCACAATATATCATCACAAACTTGACAATATTATCACGTACT 60
consensus_11753#2      ---AGGAANTATGCCCATGCATAAACNCATATAGTACTCCTAATAAGCAACANCTTGAAC 57
                                                                                   

consensus_11753#0      --------------------CAGACGCCGACCACCTCCTCCTCTCTAGCTTCTCCGACGA 40
consensus_11753#1      ATATACTATCGAAGCATATATTTGTTCTGCACATATAGTAGCTAGCAATAGTAATTAGTA 120
consensus_11753#2      GGACANCANCTTTGGTAAAAATGACAGCAAAGACGCGCTGTTGGATTCCATGTCATATGC 117
                                                       *     *                 *   

consensus_11753#0      CGCACTCCGGCGATCGAGCGGCCGGCAAGGAAGAAGAAGAAGAG--------AGAGCAGG 92
consensus_11753#1      CGTGATCTAAGAAAAGAGTGATCGATCTTCGATTTGATCGATAGTATCGTCAATCGTGTG 180
consensus_11753#2      ATGCANCGAACTCAAGANCGGATTTCNTAGTACCATCTAGGAAGCAACTTATATCGTCCA 177
                             *        **  *           *          **        *  *    

consensus_11753#0      TTGG-AGA-GGTCGTCCATGGCGTGGAAGGACAGCTACTTGGACCTCGTGCTGATCCCGG 150
consensus_11753#1      TCCG-ATCCGATCCGCCATGGAGTGGAGGGACAGCTTCTTGGACCTGATCTTGATCCCTC 239
consensus_11753#2      CTGACGTACGTGTTGCTGATCCACAAGAAACTAGCTTTTTCGTCCACGCATGCATATGCA 237
                                *     *                ****  ** * **        **     

consensus_11753#0      CGGGGATCGTGTTC----------CCGATC-----GTCTACCACGTC-TGGCTGTGGC-A 193
consensus_11753#1      TCAGCCTCCTCGTC----------CCCATG-----GCGTACCACGTC-TGGCTGTGGC-G 282
consensus_11753#2      CTAGCTATAGAGCCAAATTAACTACCAATGTGGCAGTCTACTGTACCATCACTACACTTA 297
                          *         *          ** **      *  ***     * *  **       

consensus_11753#0      CGTCGTCCGCCGCCGCCCGCTCTCCTC-CCCCGTCGGCATTAACACCGCCACCCGCCGCC 252
consensus_11753#1      CGCCGTCCGCCTCACCCCGCTCCGCAC-CGCCGCCGGCATCAACTCCGCCACCCGCCGCC 341
consensus_11753#2      TATCACACATGAACAAGCATGCTGCAGGTACCGTAGCTACCGGTATCTCGAGTTATTTTT 357
                          *   *         *   *  *     ***  *  *       * * *         

consensus_11753#0      TCTGGGTCTTGGGCATGATGAAGGACAACGAGAAGAAGGCGGTGCTGGTGGTGCAGTCGA 312
consensus_11753#1      TCTGGGCCATCAGCATGACCAAGGACAACGAGAAGAATGCGGTGCTGGTGGTGCAGTCGC 401
consensus_11753#2      TGTTGGACCGGAGCAAATCTCGCTGCAGATAGATCAGATCATCGATCGAGCCAAGATTGC 417
                       * * ** *    ***          **   ***  *   *   * * * *      * * 

consensus_11753#0      TGAGGA-ACGTGATAATGGGGTCGACGC-----TGATGGCGACGACGGCCATCCTCTTCT 366
consensus_11753#1      TGCGGA-ACGTGATCATGGGGTCGACGC-----TGGTGGCGACGACGGCGATCCTCTTCT 455
consensus_11753#2      TTTGCTTGCTTCTTCGTCAGACAAGCGTGCAATCCATGGCGGCTGCGGCGCCGTTCTTGT 477
                       *  *    * *  *  *  *     **         ***** *  ****     **** *

consensus_11753#0      GCACCGGCGTCGCCGCCATCCT-CAGCAGCACGTACACCGTCAAGAAGCCGCTCAGCGAC 425
consensus_11753#1      GCACGGGGATCGCGGCGGTGCT-GAGCAGCACGTACACCATCAAGAAGCCGCTCAGCGAC 514
consensus_11753#2      CCACCGATGATTTCCCATTGCCGCAGCCGCAGCCGCA--GTC--GCCGCCGCTCAGCGAC 533
                        *** *         *  * *   *** ***    **   **  *  *************

consensus_11753#0      GCCGTGTTCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTCACCCTCCTCCTC 485
consensus_11753#1      GCCGTCTTCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTC 574
consensus_11753#2      GCCGTCTTCGGCGCCCACGGCGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTC 593
                       ***** *****************************************  * ** ** ***

consensus_11753#0      GCCTTCCTCCTCTCCTTCCTCTCCCACACCACCGCCATCTGCACCCTCAACCAGGCCACC 545
consensus_11753#1      CTCTTCCTCGTCGCCTTCCTCTCCCACTCCCTCGCCATCTGCTTCCTCAACGAGGCCAGC 634
consensus_11753#2      CTCTTCCTCGTCGCCTTCCTCTCCCACTCCCTCGCCATCTGCTTCCTCAACGAGGCCAGC 653
                         ******* ** ************** **  **********  ******* ****** *

consensus_11753#0      TTCCTCCTCAACACCCTCTCTTCCTCCTCCTCCTTCGCCGCCGACATCG----------- 594
consensus_11753#1      TTCCTCATCAACACCTCCCCCACCCTCCTCGCCGGCGGCGATGGCGCCGGTGACGACGGC 694
consensus_11753#2      TTCCTCATCAAC------------------------------------------------ 665
                       ****** *****                                                

consensus_11753#0      -------------CCGGGCTGCCGGTGACCAAGGACTACGTCGCCGACGTGCTCGAGAGA 641
consensus_11753#1      GGCCGCCGCCTCCTCGGCCTTCCGTCGACGAGGGACTACATGGAGGAGGCGCTGGAGAAG 754
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      GGATTCCTCCTCAACCTCGTCGGAAACCGGCTGTTCTACGCCGGCGTGCCGCTTCTCCTG 701
consensus_11753#1      GGGTTCACGCTCAACTTCGTCGGCAACCGCATCTTCTTCGCCGGCGTCCCGCTCCTCCTC 814
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      TGGATCTTCGGCCCGGTCTTGGCTTGCCTCTGCTCCGTCGTCATGATCCCGATACTGCAC 761
consensus_11753#1      TGGATCTTCGGCCCGCTCCTCGCCTTCCTCTCCTCCCTCGTCATGATCCCCATCCTCTAC 874
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      AGCATCGACGTGGTTTACGTCGATGGGAGCAGCAAGGGCGAGGCCAACGCCAGAGTGGAG 821
consensus_11753#1      AACCTCGACGTCGTCAACGTCAAATCACATCGCGGCGGCGA--------CTGCGGCTGCG 926
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      ATGGTGTACGAGAGCGATGAGAGCGTCATGCAAGTTTGACCAATTTCGGACACGAGTCGG 881
consensus_11753#1      GCTGCG-------GCAATGGGAA-ATCATC---GGTGGACAAGAACGGCGCCGCAGCCGC 975
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      ACTCTATAACCTGCCTACCCTCACGGAGAATATGTGGTGGTGCTCTCGTCTCGTCCTTCA 941
consensus_11753#1      CATGGATTGCACGCTTGTC-TGACGAAGAAGCAAGCAAAGCAATCTTGGCTCGATCGATG 1034
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      AACTCGATCTTGAAGAAAAATGCGGGCAATTCTTGATCCAACAGTGACTGCACCTGTGTT 1001
consensus_11753#1      A--TCGATCT--ATCTGCAGCGAGATTTGCTCC-GGTCCAACAAAAAATAC-CTCGAGAT 1088
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      GTGTGTGTCATGTTTGTGGCTTGGATTGTTTTGAGTATTCTTATTCAAGACATGTTTAGC 1061
consensus_11753#1      ACCGGTACC-----TACGG-------TACCTGCAGCATGCTTGTTCATGTGTGATATA-- 1134
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      ATGGCACGGCCGGGAGAGTACTTGGTGCTGTAACAGAGACTCACTGATCGGTCAACTGTT 1121
consensus_11753#1      AGTGCAGTGATGGTACAGTAGAC--TGCCACATTGGTAGTTAATT--TGGCTCTATAGCT 1190
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      AACGCACAGCAATGTACTGGTTACAACTGCTGTAATCTGTCAGAATAAGATGTTCTCCCC 1181
consensus_11753#1      AGTGCATATGCATGCG-TGGACGAAAAAGCTAGTTTCTTGTGGATCAGCAACACGTACGT 1249
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      CATTGATTCACTAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGGCCCGGGACCTCATTT 1241
consensus_11753#1      CAGTGG-------------ACGATATAAGTTGCTTCCTAGATGGTACTAGGAAATCCGTT 1296
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      CGCGCTTATATGGGAGTCGCATTACGCCGGGCTTACTGGGCCGTGAGTTTAAAACGTTCT 1301
consensus_11753#1      CTTGAGTTCGTTGCATGCATATGACATGGAATCCAACAG--CGCGTCTTGCTGTCATTTT 1354
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      TACTGGGAAACCCCTGGGTGGACCCAATTAAATGCGCTTGCAGAAATGCCCTTATTGCAA 1361
consensus_11753#1      TACCAAAA---------------------------------------------------- 1362
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      GTTGGCTAATTGGTGAGAGGCCGAGCTCACGGCTTTCAAAATGTGTGGAAGCTGTTTGTG 1421
consensus_11753#1      ------------------------------------------------------------
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      AATGGACGCGCTTGTTTTGACGTGTACAGCTCGTGCTTGTAGTACGGTAAGTGCGATACG 1481
consensus_11753#1      ------------------------------------------------------------
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      GTGGCGTAGCCGGGGGGAGAGTTATGTTTAATGTGTTAAGTGACGTAGAAAGAGTCGGAA 1541
consensus_11753#1      ------------------------------------------------------------
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      AGGAGGATGTGGAGGGGAGGAAGGGAGGGCGCGGGCGGGAGTAGAAAGTGTGGGTGGGAT 1601
consensus_11753#1      ------------------------------------------------------------
consensus_11753#2      ------------------------------------------------------------
                                                                                   

consensus_11753#0      ATAGAATAAGCGCAGGGGGGGAAGATAGAGGAGTTAGGGGT 1642
consensus_11753#1      -----------------------------------------
consensus_11753#2      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)