These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1304 fasta sequence [AAGCGCCGTTGAGCACTTCCGCTTCCGGCCACCGCGGGGTCGCCGGATATGGCCCAGGCACCAGCGCGCGCCGCTTCCGTCGTGCGGCTCTTCGACGCGCACTGCCACCTGCAGGACCCGCGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT-TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT-GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGCTGTGTGATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCTCTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACTACCCGTTATATTGTACTCTCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAACATTTGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGAAAGTGGTTATTTCGTTAAGGAGGCACTATCTTGGCAATGTTGTCTAAGTGTGATTTTACATTTCTTGAGAGGAGAACAGCAGGTCAGCAAGGTATCTAAATAACTATTAAATGCACCACG] [+] EMBL AK065648 [AAGCGCCGTTGAGCACTTCCGCTTCCGGCCACCGCGGGGTCGCCGGATATGGCCCAGGCACCAGCGCGCGCCGCTTCCGTCGTGCGGCTCTTCGACGCGCACTGCCACCTGCAGGACCCGCGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGCTTTGTGATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCTCTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACTACCCGTTATATTGTACTCCCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAACATTTGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGGAAGTGGTTATTTCGTTAAGGAGGCACTATCTTGGCAATGTTGTCTAAGTGTGATTTTACATTTCTTGAGAGGAGAACAGCAGGTCAGCAAGGTATCTAAATAACTATTAAATGCACCACG] [+] EMBL AK104763 [ TCCGGCCACCGCGGGGTCGCCGGATATGGCCCAGGCACCAGCGCGCGCCGCTTCCGTCGTGCGGCTCTTCGACGCGCACTGCCACCTGCAGGACCCGCGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGCTGTGTGATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCTCTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACTACCCGTTATATTGTACTCTCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAACATTTGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGAAAGTGG ] [+] EMBL AK061538 [ TCCGGCCACCGCGGGGTCGCCGGATATGGCCCAGGCACCAGCGCGCGCCGCTTCCGTCGTGCGGCTCTTCGACGCGCACTGCCACCTGCAGGACCCGCGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGCTGTGTGATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCTCTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACTACCCGTTATATTGTACTCTCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAACATTTGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGAAAGTGG ] [+] EMBL CF323330 [ CGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGTNTACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAATGGGAGAAAGTAAAAAAGATTCTAATTCACGGGCAT ] [+] EMBL CF323827 [ CGCGCTTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAGTACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCGGATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCAT ] [+] EMBL BE230254 [ TCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGCGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGG ] [+] EMBL BE230242 [ TCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGCGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGTTCACAATGAAGTGGAAGC ] [+] EMBL BE229963 [ TCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGCGAACTGGACCTTTCCCAGCTGGTGTGTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGT TACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAAATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAAT GGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTGGTATGAAGTATGTCGCCTCACTGCT ] consensusID : consensus_11816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence [GCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTNGTCTNGACAAAGGTTCACATGGAAAAACCATTGACTTTGGNGAACAGGTTGAAGNTTTNCAGCAGCAACTTGAACTTTCTNAGGGGTTGNACAAAGNCCNTTTNN] [+] EMBL D43498 [GCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAGATTNGTCTNGACAAAGGTTCACATGGAAAAACCATTGACTTTGGNGAACAGGTTGAAGNTTTNCAGCAGCAACTTGAACTTTCTNAGGGGTTGNACAAAGNCCNTTTNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11816#0 AAGCGCCGTTGAGCACTTCCGCTTCCGGCCACCGCGGGGTCGCCGGATATGGCCCAGGCA 60 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 CCAGCGCGCGCCGCTTCCGTCGTGCGGCTCTTCGACGCGCACTGCCACCTGCAGGACCCG 120 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 CGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGC 180 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 TTCGCCGTCAACGGCACTTCCGAGAAAGACTGGCACCTGGTGAAGCAGATGGCCGAGGAG 240 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 TACCCGTCCGTCGTCCCCTGCTTCGGCCTCCACCCATGGTGGGTACCGGAGAGATCGCCG 300 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 GATTGGATGGATTCGCTCCGGCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG 360 consensus_11816#1 --------------------GCGGTTCTTCGCTGAAACACCAGAGGCGGCTGTTGGGGAG 40 **************************************** consensus_11816#0 ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATTGACTTTGGAGAACAGGTTGAAGTT 420 consensus_11816#1 ATTNGTCTNGACAAAGGTTCACATGGAAAAACCATTGACTTTGGNGAACAGGTTGAAGNT 100 *** **** *********************************** ************* * consensus_11816#0 TTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAA-GCCTGTTTCTGTTCATTGTGT 479 consensus_11816#1 TTNCAGCAGCAACTTGAACTTTCTNAGGGGTTGNACAAAGNCCNTTTNN----------- 149 ** ****************** ** *** **** **** * * *** consensus_11816#0 GCGCGCCTTTGGTGATCTTCTGGAGATACTAAAGAGAACTGGACCTTTCCCAGCTGGTGT 539 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 GTTGCTGCATTCGTATCTAGGATCTGCAGAAATGGTGTCCAGCCTTGAAATTTTAGGCTG 599 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 TTACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCT 659 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 AAAATCAATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGAA 719 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 ATTGGATGATATTTCTCTATTAGCAGTACCTGTGGATAGCTCAAGTGCAGATAATGGAGA 779 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 AAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCC 839 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 ATCTAATATCCACATTGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGA 899 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 ACTTGCTGAAGTGACATACAAGAATGCGACCAAGCTGTTCTCTTATCATGGATCCAAAGT 959 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 TCACAATGAAGTGGAAGCTGTGTGATTGGGTGGGCATCCAATTTGAACCATGTTGTTCCT 1019 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 CTGAAATTATGAACCCTGGTGCGTGCATTCTGCCTCTGAACACTACCCGTTATATTGTAC 1079 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 TCTCTCCTTTTTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACTAACCAACATTAAA 1139 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 CATTTGGGGAAGGCGGTAGTATATTAGTAATTGCAACATAAAAGAAAGTGGTTATTTCGT 1199 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 TAAGGAGGCACTATCTTGGCAATGTTGTCTAAGTGTGATTTTACATTTCTTGAGAGGAGA 1259 consensus_11816#1 ------------------------------------------------------------ consensus_11816#0 ACAGCAGGTCAGCAAGGTATCTAAATAACTATTAAATGCACCACG 1304 consensus_11816#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||