These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 908 fasta sequence [CCTCGGCGGCGGCGCGCAGTCGCTCGTGTCGCAGACGGCGGCGGCGTACGGGAATTCCTTCTCGTACTGCCTCCCGCCGACATCGGGCTCGTCCGGGTTCCTCACGCTCGGCGGCGGCGGCGGCGTGTCGGGGTTCGTGACGACGCGGATGCTCAGGAGCAGGCAAATCCCGACGTTCTACGGCGCGAGGCTGCAGGACATCGCCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC-GACCCGAACGGGATCAT-GTACGGCAACT-GCCTCGCGTTCGCCGCCACCGGCGA-CGACGGGACCACCGGCATCATCGGGAAC-GTGCAGCAGCGGACGTTCGAGGTCCTG-TACGACGTCGGCAGCAGCACG-CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA-GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG-GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA-TTTTTTATGAATAATAAAGACTTTATACTGATTAATTCAAAAAAAA] [+] EMBL AK101967 [CCTCGGCGGCGGCGCGCAGTCGCTCGTGTCGCAGACGGCGGCGGCGTACGGGAATTCCTTCTCGTACTGCCTCCCGCCGACATCGGGCTCGTCCGGGTTCCTCACGCTCGGCGGCGGCGGCGGCGTGTCGGGGTTCGTGACGACGCGGATGCTCAGGAGCAGGCAAATCCCGACGTTCTACGGCGCGAGGCTGCAGGACATCGCCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC GACCCGAACGGGATCAT GTACGGCAACT GCCTCGCGTTCGCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTATGAATAATAAAGACTTTATACTGATTAATTCgatcg ] [+] EMBL AK105989 [CCTCGGCGGCGGCGCGCAGTCGCTCGTGTCGCAGACGGCGGCGGCGTACGGGAATTCCTTCTCGTACTGCCTCCCGCCGACATCGGGCTCGTCCGGGTTCCTCACGCTCGGCGGCGGCGGCGGCGTGTCGGGGTTCGTGACGACGCGGATGCTCAGGAGCAGGCAAATCCCGACGTTCTACGGCGCGAGGCTGCAGGACATCGCCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC GACCCGAACGGGATCAT GTACGGCAACT GCCTCGCGTTCGCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTATGAATAATAAAGACTTTATAC ] [-] EMBL CB644348 [ ATGCTCAGGAGCAGGCAAATCCCGACGTTCTACGGCGCGAGGCTGCAGGACATCGCCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC GACCCGAACGGGATCAT GTACGGCAACT GCCTCGCGTTCGCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTATGAATAATAAAGACTTTATACTGATTAAAAAAAAAAAA ] [-] EMBL CB646755 [ CCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC GACCCGAACGGGATCAT GTACGGCAACT GCCTCGCGTTCGCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTATGAATAATAAAGACTTTATACT ] [-] EMBL CB647128 [ CGGGCTGTCGCCGTCGGTGTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGCGTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTC GACCCGAACGGGATCAT GTACGGCAACT GCCTCGCGTTCGCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTAGGAATAATA ] [+] EMBL BI811839 [ gcCCGCCATCGACCTCTGACCCG ACGGGATCATGGTGCGGCAACTGGCCTCGCGTTCGCCGCCACC GCGATCGACGGGACCACCGGCATCATCGGGAACGGTGCAACATCGGACTTTCGA GTCCTGTTACGACGTCGGCAGCAGCACGTCTCGGCTTCC GTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTA CACGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTTTGTGTTGCGAGGTAAGATTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCT AAAAAATATTATATTAGGAGTGAACTTTTCATGATTTTTTTATGAATAATAAAGACTTTATACTGATTAA AAAAAAAA] [+] EMBL AU183948 [ ATCAT GTACGGCAACT GCCTCGCGTTCCCCGCCACCGGCGA CGACGGGACCACCGGCATCATCGGGAAC GTGCAGCAGCGGACGTTCGAGGTCCTG TACGACGTCGGCAGCAGCACG CTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCA GTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTG GTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGA TTTTTTATGAATAATAAAGACTTTATACTGATTAATTCAAAAAAAA] consensusID : consensus_11832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTCGACCCGAACGGGATCATGTACCGGCACTGCCTCGCGTTCGCCGCCACCCGGCGACGACGGGACCACCCGGCATCATCGGGAACGTGCCACGCCACGCCGGACCGTTCGAGGTCCCTGTACCGACGTCGGCCAGCCAGCACCGCCTCGGCTTCCGGTCCCGGCGCCGTGTTGACCCGGGGCCGGGCCGGCGCCGACCGCCCGGCGCCCTGGCCGGGCCCGGGCAACCACGACACACGTAGAGGCCACAGAGGGTACCCGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACCAGATATAATGATATATATTGCCATTGTAATCCCACACCCAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTAAAAAAAAAA] [+] EMBL BQ907407 [CAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTCGACCCGAACGGGATCATGTACCGGCACTGCCTCGCGTTCGCCGCCACCCGGCGACGACGGGACCACCCGGCATCATCGGGAACGTGCCACGCCACGCCGGACCGTTCGAGGTCCCTGTACCGACGTCGGCCAGCCAGCACCGCCTCGGCTTCCGGTCCCGGCGCCGTGTTGACCCGGGGCCGGGCCGGCGCCGACCGCCCGGCGCCCTGGCCGGGCCCGGGCAACCACGACACACGTAGAGGCCACAGAGGGTACCCGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACCAGATATAATGATATATATTGCCATTGTAATCCCACACCCAAATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTAAAAAAAAAA] consensusID : consensus_11832#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [CCGGATTCCCGGGGACCCGCGCGTCCGCGGACGCGTGGCGCGGCGCCGCCATCGACCGTGACCCGGCGGATCATGTGCGGCGAGCGTGCCGTCGCGTTCGGCCGCCACCGGCGATCGACGGGACCACCGGCATCATCGGGTACGTCATCAGTCGGACGTTTCGAGGTCCTGTACGTACTGTCGGCACAGCACGCTCGGCTTCCGGTCCGCGCGTTTGACCGGGCGGCGGCGCGACGCCGGCGCCTGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCAGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAAT] [+] EMBL BI807790 [CCGGATTCCCGGGGACCCGCGCGTCCGCGGACGCGTGGCGCGGCGCCGCCATCGACCGTGACCCGGCGGATCATGTGCGGCGAGCGTGCCGTCGCGTTCGGCCGCCACCGGCGATCGACGGGACCACCGGCATCATCGGGTACGTCATCAGTCGGACGTTTCGAGGTCCTGTACGTACTGTCGGCACAGCACGCTCGGCTTCCGGTCCGCGCGTTTGACCGGGCGGCGGCGCGACGCCGGCGCCTGCGGGCCGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCAGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11832#0 CCTCGGCGGCGGCGCGCAGTCGCTCGTGTCGCAGACGGCGGCGGCGTACGGGAATTCCTT 60 consensus_11832#1 ------------------------------------------------------------ consensus_11832#2 ------------------------------------------------------------ consensus_11832#0 CTCGTACTGCCTCCCGCCGACATCGGGCTCGTCCGGGTTCCTCACGCTCGGCGGCGGCGG 120 consensus_11832#1 ------------------------------------------------------------ consensus_11832#2 ------------------------------------------------------------ consensus_11832#0 CGGCGTGTCGGGGTTCGTGACGACGCGGATGCTCAGGAGCAGGCAAATCCCGACGTTCTA 180 consensus_11832#1 ------------------------------------------------------------ consensus_11832#2 ------------------------------------------------------------ consensus_11832#0 CGGCGCGAGGCTGCAGGACATCGCCGTGGGCGGGAAGCAGCTCGGGCTGTCGCCGTCGGT 240 consensus_11832#1 ------------------------------------------------------------ consensus_11832#2 ------------------------------------------------------------ consensus_11832#0 GTTCGCCGCCGGGTCCGTGGTGGACTCCGGCACGATCATCACGCGGCTGCCGCCGACGGC 300 consensus_11832#1 ------------------------------------------------------------ consensus_11832#2 ------------------------------------------------------------ consensus_11832#0 GTACTCGGCGCTGTCGTCGGCGTTCAAGGCCGGCATGAAGCAGTACCGGTCGGCGCCGGC 360 consensus_11832#1 ------------------------------------------------------------ consensus_11832#2 ------------------------------------------------------------ consensus_11832#0 CAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGAC 420 consensus_11832#1 CAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCCATACCGAC 60 consensus_11832#2 ------------------------------------------CCGGATTCCCGGG--GAC 16 ** *** ** *** consensus_11832#0 CGTCGCGCTGGTGTTCTCCGG---CGGCGCCGCCATCGACCTCGACCCGAACGGGATCAT 477 consensus_11832#1 CGTCGCGCTGGTGTTCTCCGG---CGGCGCCGCCATCGACCTCGACCCGAACGGGATCAT 117 consensus_11832#2 CCGCGCGTCCGCGGACGCGTGGCGCGGCGCCGCCATCGACCGTGACCCGGC--GGATCAT 74 * **** * * * * * ***************** ****** ******* consensus_11832#0 GTACGGCAACTG---CCTCGCGTTCG-CCGCCACC-GGCGA-CGACGGGACCACC-GGCA 530 consensus_11832#1 GTACCGGCACTG---CCTCGCGTTCG-CCGCCACCCGGCGA-CGACGGGACCACCCGGCA 172 consensus_11832#2 GTGCGGCGAGCGTGCCGTCGCGTTCGGCCGCCACC-GGCGATCGACGGGACCACC-GGCA 132 ** * * * * * ********* ******** ***** ************* **** consensus_11832#0 TCATCGGGAACGTGCAGCAGC------GGACGTTCGAGGTCC-TGTAC-GAC-GTCGGCA 581 consensus_11832#1 TCATCGGGAACGTGCCACGCCACGCCGGACCGTTCGAGGTCCCTGTACCGAC-GTCGGCC 231 consensus_11832#2 TCATCGGGTACGTCATCAGTC-----GGACGTTTCGAGGTCC-TGTACGTACTGTCGGCA 186 ******** **** * * ********** ***** ** ****** consensus_11832#0 G--CAGCACG--CTCGGCTTCCGGTCC-GGCGC-GTGTTGACC-GGGGCGGG--CGGCGC 632 consensus_11832#1 AGCCAGCACCGCCTCGGCTTCCGGTCCCGGCGCCGTGTTGACCCGGGGCCGGGCCGGCGC 291 consensus_11832#2 ---CAGCACG--CTCGGCTTCCGGTCCGCGCGT----TTGACC--GGGCGG---CGGCGC 232 ****** *************** *** ****** **** * ****** consensus_11832#0 -GACG--CCGGCGCC-TGGCGGG--CCGGGCAAC-ACGACACACGTAGAGGCCA-AGAGG 684 consensus_11832#1 CGACCGCCCGGCGCCCTGGCCGGGCCCGGGCAACCACGACACACGTAGAGGCCACAGAGG 351 consensus_11832#2 -GACG--CCGGCGCC--TGCGGG--CCGGGCAAC-ACGACACACGTAGAGGCCA-AGAGG 283 *** ******** ** ** ********* ******************* ***** consensus_11832#0 GTAGCAGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCG 744 consensus_11832#1 GTACCCGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCG 411 consensus_11832#2 GTAGCAGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCGAGGTAAGAGTCG 343 *** * ****************************************************** consensus_11832#0 TGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAA 804 consensus_11832#1 TGACGTGTGATGATGACCAGATATAATGATATATATTGCCATTGTAATCCCACACCCAAA 471 consensus_11832#2 TGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAAT------------ 391 ***************** ********************* ******** consensus_11832#0 ATATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGATT 864 consensus_11832#1 -TATTATATTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTAAAAAAA 530 consensus_11832#2 ------------------------------------------------------------ consensus_11832#0 TTTTATGAATAATAAAGACTTTATACTGATTAATTCAAAAAAAA 908 consensus_11832#1 AAA----------------------------------------- 533 consensus_11832#2 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||