Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11858 cluster # 11858       Sequences # 9       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11858#0 length = 1460 sequences # 9  

consensusID : consensus_11858#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1460
fasta sequence
                              [GTACACATCTATCCATCGATCCAGTCCGCCCCGCAGCAGCAGCAGATAGCTAGCTAGCTAGCAAACAATGGCGGCGGATCATGAATTGCGAGCTGCAGCAGTGGTGATGGTGGTGGTGGTGGTGCTGGGCATGGTGTCGACGTCGTCGGCGCACGTGTTCGTGGGGGCGTACAACACGACGTGCCCGAACGCGGAGGACATCGTGTACAAGGAGATGACCAGCATCCTCGCCAAGTCGCCGGAGCTCGCCGGGCCGGTGCTGAGGCTCTTCTCCGTGGACTGCTTCGTGGGCGGCTGCGAGGGGTCCATCCTGCTGGACTCGACGCCGGGGAACAAGGCGGAGAAGGACTCGCCGCTGAACAAGGGAGTTAAAGGGTACGAGGTGGTGGACGCCATCAAGGCCAAGCTCGACGCCGCC-TGCCCCGGCATCGTCTCCTGCGCCGACACCCTCGCCCTCGCCGCCCGCGACGTCGTGCGCCTAACGAAAGGGCCGTACATCCCACTTCCGACAGGTCGGAGAGATGGCAACAGCTCTAACGCCGCCGATGTGGCCGCCAACTCTCCTGCCCCCGGCGCCACCGTCAACGACCTCCTCACCATCTTCGCCAAGTTCAACTTCACCGCCAAGGATCTTGCCGTCCTCTCAGGTGCGCACACGATCGGCAAGGCCCACTGCTCCGCCTTCTCCACCCGCCTCTACAGCAACTCCTCCTCCAACGGCGGCCCCACGCTGGACGCCAACTACACGACGGCGCTCCGCGGGCAGTGCAAGGTCGGCGACGTGGACACCCTCGTCGACCTCGACCCCCCAACCCCGACCACCTTCGACACCGACTACTACAAGCAGGTGGCCGCGCAGCGGGGCCTCCTCGCCACCGACGCCGCGCTTCTCCTCAACGCCGACACCAAGGCCTACGTCCTCCGCCAGGCCAACGCCACCTCCGACGACGAGTTCTTCGCCGACTTCATCGTCTCCTTCGTCAACATGAGCAAGATCGGCGTGCTCACCCACTCCCACGGCGAGATCAGGCACAAGTGCTCTGCTGTCAACCCGCCGTCGCCGCCGTCCTCCGCCGCCGCCTCCATGCTCGCCACCTCGCTCGCCGGCTCGCTTCTCTTCCTCCTCGCGGGGGTCCT-CGTGCTGCTCTTCTGATCGATCCATCGATCGATCTCACACATTTTACATGCATGCGTGCGTGCAAATTGGACAAACTGTTGTACTGATTGTTCGTACGTCGTTTCGTCGTCATTTCTGGATTTGTTTTACAAAAACCAATGATTTTTCCTTGATTTTCTTTTAATTTGTCATGTGTGCAGGGTTATAACCCTTGTTTGTTTACTTAATTTCCAAAGGGACAAATTTGTATCTTGGGAGATGAAATCTCCGATTGTTGTAACTGTGGCCGGACGGACGTCAATCAAGGGCCAAATGAATCGTGA-TTTGTTGTGAATAAAAAAAA]

[+] EMBL AK108824             [GTACACATCTATCCATCGATCCAGTCCGCCCCGCAGCAGCAGCAGATAGCTAGCTAGCTAGCAAACAATGGCGGCGGATCATGAATTGCGAGCTGCAGCAGTGGTGATGGTGGTGGTGGTGGTGCTGGGCATGGTGTCGACGTCGTCGGCGCACGTGTTCGTGGGGGCGTACAACACGACGTGCCCGAACGCGGAGGACATCGTGTACAAGGAGATGACCAGCATCCTCGCCAAGTCGCCGGAGCTCGCCGGGCCGGTGCTGAGGCTCTTCTCCGTGGACTGCTTCGTGGGCGGCTGCGAGGGGTCCATCCTGCTGGACTCGACGCCGGGGAACAAGGCGGAGAAGGACTCGCCGCTGAACAAGGGAGTGAAAGGGTACGAGGTGGTGGACGCCATCAAGGCCAAGCTCGACGCCGCC TGCCCCGGCATCGTCTCCTGCGCCGACACCCTCGCCCTCGCCGCCCGCGACGTCGTGCGCCTAACGAAAGGGCCGTACATCCCACTTCCGACAGGTCGGAGAGATGGCAACAGCTCTAACGCCGCCGATGTGGCCGCCAACTCTCCTGCCCCCGGCGCCACCGTCAACGACCTCCTCACCATCTTCGCCAAGTTCAACTTCACCGCCAAGGATCTTGCCGTCCTCTCAGGTGCGCACACGATCGGCAAGGCCCACTGCTCCGCCTTCTCCACCCGCCTCTACAGCAACTCCTCCTCCAACGGCGGCCCCACGCTGGACGCCAACTACACGACGGCGCTCCGCGGGCAGTGCAAGGTCGGCGACGTGGACACCCTCGTCGACCTCGACCCCCCAACCCCGACCACCTTCGACACCGACTACTACAAGCAGGTGGCCGCGCAGCGGGGCCTCCTCGCCACCGACGCCGCGCTTCTCCTCAACGCCGACACCAAGGCCTACGTCCTCCGCCAGGCCAACGCCACCTCCGACGACGAGTTCTTCGCCGACTTCATCGTCTCCTTCGTCAACATGAGCAAGATCGGCGTGCTCACCCACTCCCACGGCGAGATCAGGCACAAGTGCTCTGCTGTCAACCCGCCGTCGCCGCCGTCCTCCGCCGCCGCCTCCATGCTCGCCACCTCGCTCGCCGGCTCGCTTCTCTTCCTCCTCGCGGGGGTCCT CGTGCTGCTCTTCTGATCGATCCATCGATCGATCTCACACATTTTACATGCATGCGTGCGTGCAAATTGGACAAACTGTTGTACTGATTGTTCGTACGTCGTTTCGTCGTCATTTCTGGATTTGTTTTACAAAAACCAATGATTTTTCCTTGATTTTCTTTTAATTTGTCATGTGTGCAGGGTTATAACCCTTGTTTGTTTACTTAATTTCCAAAGGGACAAATTTGTATCTTGGGAGATGAAATCTCCGATTGTTGTAACTGTGGCCGGACGGACGTCAATCAAGGGCCAAATGAATCGTGA TT                  ]
[+] EMBL OSR17441A            [      ATCTATCCATCGATCCAGTCCGCCCCGCAGCAGCAGCAGATAGCTAGCTAGCTAGCAAACAATGGCGGCGGATCATGAATTGCGAGCTGCAGCAGTGGTGATGGTGGTGGTGGTGGTGCTGGGCATGGTGTCGACGTCGTCGGCGCACGTNTTCGTGGGGGCGTACAACACGACGTGCCCNAACGCGGAGGACATCGTGTACAAGGAGATGACCAGCATCCTCGCCAAGTCGCCGGAGCTCGCCGGGCCGGTGCTGAGGCTCTTCTCCGTGGACTGCTTCGTGGGCGGCTGCNAGGGGTCCATCCTGCTGGACTCGACGCCGGGGAACAAGGCGGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSR15572A            [                                                                          CGGATCATGAATTGCGAGCTGCAGCAGTGGTGATGGTGGTGGTGGTGGTGCTGGGCATGGTGTCGACGTCGTCGGCGCACGTTTTCGTGGGGGCGTACAACACGACGTGCCCGAACGCGGAGGACATCGTGTACAAGGAGATGACCAGCATNCTCGCCAAGTCGCCGGAGCTCGCCGGGCCGGTGCTGAGGCTCTTCTCCGTGGACTGCTTCGTGGGCGGCTGCGAGGGGTCCATCCTGCTGGACTCGACGCCGGGGAACAAGGCGGAGAAGGACTCGCCGCTGAACAAGGGAGTTAAAGGGTACGAGGTGGTGGACGCCATCAAGGCCAAGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSR21601A            [                                                                                                                                                                   GGGGCGTACAACACGACGTGCCCGAACGCGGAGGACATCGTGTACAAGGAGATGACCAGCATCCTCGCCAAGTCGCCGGAGCTCGCCGGGCCGGTGCTGAGGCTCTTCTCCGTGGACTGCTTCGTGGGCGGCTGCGAGGGGTCCATCCTGCTGGACTCGACGCCGGGGAACAAGGCGGAGAAGGACTCGCCGCTGAACAAGGGAGTTAAAGGGTACGAGGTGGTGGACGCCATCAAGGCCAAGCTCGACGCCGCCTTGCCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU083492             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CACGGCGAGATCAGGCACAAGTGCTCTGCTGTCAACCCGCCGTCGCCGCCGTCCTCCGCCGCCGCCTCCATGCTCGCCACCTCGCTCGCCGGCTCGCTTCTCTTCCTCCTCGCGGGGGTCCTCCGTGCTGCTCTTCTGATCGATCCATCGATCGATCTCACACATTTTACATGCATGCGTGCGTGCAAATTGGACAAACTGTTGTACTGATTGTTCGTACGTCGTTTCGTCGTCATTTCTGGATTTGTTTTACAAAAACCAATGATTTTTCCTTGATTTTCTTTTAATTTGTCATGTGTGCAGGGTTATAACCCTTGTTTGTTTACTTAATTTCCAAAGGGACAAATTTGTATCTTGGGAGATGAAATCTCCGATTGTTGTAACTGTGGCCGGACGGACGTCAATCAAGGGCCAAATGAATCGTGA TTTGTTGTGAATAAAAAAAA]
[+] EMBL C20485               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCCGCGGTCGCCGCNGTCTTCCGCCGCCGCTTCCATGNTCGCCACTTCGCTCGCCGGCTCGCTTCTCTTCCTCCTCGCGGGGGTCCT CGTGCTGCTCTTCTGATCGATCCATCGATCGATCTCACACATTTTACATGCATGCGTGCGTGCAAATTGGACAAACTGTTGTACTGATTGTTCGTACGTCGTTTCGTCGTCATTTCTGGATTTGTTTTACAAAAACCAATGATTTTTCCTTGATTTTCTTTTAATTTGTCATGTGTGCAGGGTTATAACCCTTGTTTGTTTACTTAATTTCCAAAGGGACAAATTTGTATCTTGGGAGATGAAATCTCCGATTGTTGTAACTGTGGCCGGACGGACGTCAATCAAGGGCCAAANGNATCGTGA T                   ]
[+] EMBL CF290978             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCCTCCGCCGCCGCCTCCATGCTCGCCACCTCGCTCGCCGGCTCGCTTCTCTTCCTCCTCGCGGGAGTCCC CGTGCTGCTCTTCTGATCGATCCATCGATCGATCTCACACATTTTACATGCATGCGTGCGTGCAAATTGGACAAACTGTTGTACTGATTGTTCGTACGTCGTTTCGTCGTCATTTCTGGATTTGTTTTACAAAAACCAATGATTTTTCCTTGATTTTCTTTTAATTTGTCATGTGTGCAGGGTTATAACCCTTGTTTGTTTACTTAATTTCCAAAGGGACAAATTTGTATCTTGGGAGATGAAATCTCCGATTGTTGTAACTGTGGCCGGACGGACGTCAATCAAGGGCCAAATGAATCGTGANTTTGTTGTGAATAAAAAAA ]
[-] EMBL CF290979             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCTCCGCCGCCGCCTCCATGCTCGCCACCTCGCTCGCCGGCTCGCTTCTCTTCCTCCTCGCGGGAGTCCC CGTGCTGCTCTTCTGATCGATCCATCGATCGATCTCACACATTTTACATGCATGCGTGCGTGCAAATTGGACAAACTGTTGTACTGATTGTTCGTACGTCGTTTCGTCGTCATTTCTGGATTTGTTTTACAAAAACCAATGATTTTTCCTTGATTTTCTTTTAATTTGTCATGTGTGCAGGGTTATAACCCTTGTTTGTTTACTTAATTTCCAAAGGGACAAATTTGTATCTTGGGAGATGAAATCTCCGATTGTTGTAACTGTGGCCGGACGGACGTCAATCAAGGGCCAAATGAATCGTGA TTTGTTGTGAATAAAAAAAA]
[+] EMBL C20495               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             tTCCGCCGCNGCTTCCATGTTCGCCACTTCGNTCGCCGGCTCGCTTCTCTTCCTCCTCGCGGGGGTCCT CGTGCTGCTCTTCTGATCGATCCATCGATCGATCTCACACATTTTACATGCATGCGTGCGTGCAAATTGGACAAACTGTTGTACTGATTGTTCGTACGTCGTTTCGTCGTCATTTCTGGATTTGTTTTACAAAAACCAATGATTTTTCCTTGATTTTCTTTTAATTTGTCATGTGTGCAGGGTTATAACCCTTGTTTGTTTACTTAATTTCCAAAGGGACAAATTTGTATCTTGGGAGATGAAATCTCCGATTGTTGTAACTGTGGCCGGACGGACGTCAATCAAGGGCCAAATGAATCGTGA T                   ]


>consensus_11858#0 GTACACATCTATCCATCGATCCAGTCCGCCCCGCAGCAGCAGCAGATAGCTAGCTAGCTA GCAAACAATGGCGGCGGATCATGAATTGCGAGCTGCAGCAGTGGTGATGGTGGTGGTGGT GGTGCTGGGCATGGTGTCGACGTCGTCGGCGCACGTGTTCGTGGGGGCGTACAACACGAC GTGCCCGAACGCGGAGGACATCGTGTACAAGGAGATGACCAGCATCCTCGCCAAGTCGCC GGAGCTCGCCGGGCCGGTGCTGAGGCTCTTCTCCGTGGACTGCTTCGTGGGCGGCTGCGA GGGGTCCATCCTGCTGGACTCGACGCCGGGGAACAAGGCGGAGAAGGACTCGCCGCTGAA CAAGGGAGTTAAAGGGTACGAGGTGGTGGACGCCATCAAGGCCAAGCTCGACGCCGCCTG CCCCGGCATCGTCTCCTGCGCCGACACCCTCGCCCTCGCCGCCCGCGACGTCGTGCGCCT AACGAAAGGGCCGTACATCCCACTTCCGACAGGTCGGAGAGATGGCAACAGCTCTAACGC CGCCGATGTGGCCGCCAACTCTCCTGCCCCCGGCGCCACCGTCAACGACCTCCTCACCAT CTTCGCCAAGTTCAACTTCACCGCCAAGGATCTTGCCGTCCTCTCAGGTGCGCACACGAT CGGCAAGGCCCACTGCTCCGCCTTCTCCACCCGCCTCTACAGCAACTCCTCCTCCAACGG CGGCCCCACGCTGGACGCCAACTACACGACGGCGCTCCGCGGGCAGTGCAAGGTCGGCGA CGTGGACACCCTCGTCGACCTCGACCCCCCAACCCCGACCACCTTCGACACCGACTACTA CAAGCAGGTGGCCGCGCAGCGGGGCCTCCTCGCCACCGACGCCGCGCTTCTCCTCAACGC CGACACCAAGGCCTACGTCCTCCGCCAGGCCAACGCCACCTCCGACGACGAGTTCTTCGC CGACTTCATCGTCTCCTTCGTCAACATGAGCAAGATCGGCGTGCTCACCCACTCCCACGG CGAGATCAGGCACAAGTGCTCTGCTGTCAACCCGCCGTCGCCGCCGTCCTCCGCCGCCGC CTCCATGCTCGCCACCTCGCTCGCCGGCTCGCTTCTCTTCCTCCTCGCGGGGGTCCTCGT GCTGCTCTTCTGATCGATCCATCGATCGATCTCACACATTTTACATGCATGCGTGCGTGC AAATTGGACAAACTGTTGTACTGATTGTTCGTACGTCGTTTCGTCGTCATTTCTGGATTT GTTTTACAAAAACCAATGATTTTTCCTTGATTTTCTTTTAATTTGTCATGTGTGCAGGGT TATAACCCTTGTTTGTTTACTTAATTTCCAAAGGGACAAATTTGTATCTTGGGAGATGAA ATCTCCGATTGTTGTAACTGTGGCCGGACGGACGTCAATCAAGGGCCAAATGAATCGTGA TTTGTTGTGAATAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)