These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 761 fasta sequence [AATCTCCTCGGCGCGACGCCACGCCACCGACCAACGCGACAAGGCGAGACGACGCGCACGCGACACACAGCCAGCGGAAGCAGCAGCAGGACGACGAGGAGGAGGAGGAGATAGCTTAGATCCCGCTCGCCTCTGATCCCCCC-GGATCCGATCCGAGATCCTCCACCCATGGC-GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT-GCAGC-ATGGAGTTCTGC-ATCTGCTTGCTTCTCACCA-TCCTTGGCTATGTCCCTG-GCATC-ATCTACGC-AGTCTATGTGCTTGTTGCT-CTTGACTCAGACC-AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC-TTC-AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC-TGTTGAATTGGTATCTGGTAACTTCGTC-TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACCT-AGTCATTTGGTC--GTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTC-AAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAAAAAAATTGGTGTTTGTATGTCAATACCGTTGCAATTCTTGCCTAT] [+] EMBL AB030211 [AATCTCCTCGGCGCGACGCCACGCCACCGACCAACGCGACAAGGCGAGACGACGCGCACGCGACACACAGCCAGCGGAAGCAGCAGCAGGACGACGAGGAGGAGGAGGAGATAGCTTAGATCCCGCTCGCCTCTGATCCCCCC GGATCCGATCCGAGATCCTCCACCCATGGC GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC TTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC TGTTGAATTGGTATCTGGTAACTTGGTC TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACCT AGTCATTTGGTC GTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTC AAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAAAAAAA ] [+] EMBL CA757219 [ CGCGCACGCGACACACAGCCAGCGGAAGCAGCAGCAGGACGAGGAGGAGGAGGAGGAGATAGCTTAGATCCCGCTCGCCTCTGATCCCCCCAGGATCCGATCCGAGATCCTCCACCCATGGC GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC TTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC TGTTGAATTGGTATCTGGTAACTTCGTC TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCANGGAGGACGAGGAGGCACCT AGTCATTTGGTC GTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATCATTTTATCTGGATCTCTTAACTCCTTATTTCAGTCTGTTAAATGCTC AAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTG ] [+] EMBL C73781 [ GACGAGGAGGAGGAGGAGATAGCTTAGATCCCGCTCGCCTCTGATCCCCCC GGATCCGATCCGAGATCCTCCACCCATGGC GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCACTTTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGCTTGTTGAATTGGTATCTGGTAACTTCGTCTTGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAG AGGAACAGTGGTT ] [+] EMBL OSC25552 [ tGAGGAGGAGGAGGAGATAGCTTAGATCCCGCTCGCCTCTGATCCCCCC GGATCCGATCCGAGATCCTCCACCCATGGC GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATACTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCC ] [+] EMBL AU183291 [ GCTTAGATCCCGCTCGCCTCTGATCCCCCC GGATCCGATCCGAGATCCTCCACCCATGGCAGTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC TTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC TGTTGAATTGGTATCTGGTAACTTCGTC TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGT ] [+] EMBL AK062410 [ TCGCCTCTGATCCCCCC GGATCCGATCCGAGATCCTCCACCCATGGC GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC TTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC TGTTGAATTGGTATCTGGTAACTTCGTC TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACCT AGTCATTTGGTC GTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTC AAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAATATTATTGGTG ] [+] EMBL CB681118 [ CCGGCCCTTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC TTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC TGTTGAATTGGTATCTGGTAACTTCGTC TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACCT AGTCATTTGGTC GTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTC AAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAATATTATTGGTGTTTGTATGTCAATACCGTTGCAATTCTTGCCTAT] [+] EMBL BI798084 [ gTCCTCCGCTTCGGATGCTGGCAGCAATGGAGTTCTGCAATCTGCTTGCTTCTCACCAGTCC TGGCTATGTCCCTGCGCATCAATCTACCCAAGTCTATGTCCTT TTGCTCCTTGACTCAGACCAAGTACCAGAGGGAATATCATACCCTTGCTTAGCCAGTCCAC TTCAAATTCTGTCGAAACCTATGCTCTATCCAGAACAACCAAGTTCT C TGTTGAATTGGTATCTGGTAACTTCGTC TGGGTTTTTTGATATGGC TTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACCTCAGTCATTTGGTCGTGTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATCATTTTATCTGCATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAACCACA AAGTTGTTGAGGGTAAAAAAAAaa ] consensusID : consensus_11867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [TTGGTCGTTAAATNNCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTNTCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAACTGTGGTCTGGTCTCCATTNTGTAATTTTGATTCAAGAAAATAAGTTGTTGNGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031254 [TTGGTCGTTAAATNNCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTNTCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAACTGTGGTCTGGTCTCCATTNTGTAATTTTGATTCAAGAAAATAAGTTGTTGNGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11867#0 AATCTCCTCGGCGCGACGCCACGCCACCGACCAACGCGACAAGGCGAGACGACGCGCACG 60 consensus_11867#1 ------------------------------------------------------------ consensus_11867#0 CGACACACAGCCAGCGGAAGCAGCAGCAGGACGACGAGGAGGAGGAGGAGATAGCTTAGA 120 consensus_11867#1 ------------------------------------------------------------ consensus_11867#0 TCCCGCTCGCCTCTGATCCCCCCGGATCCGATCCGAGATCCTCCACCCATGGCGTCCGGC 180 consensus_11867#1 ------------------------------------------------------------ consensus_11867#0 CGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTC 240 consensus_11867#1 ------------------------------------------------------------ consensus_11867#0 CTCCGCTTCGGATGCTGCAGCATGGAGTTCTGCATCTGCTTGCTTCTCACCATCCTTGGC 300 consensus_11867#1 ------------------------------------------------------------ consensus_11867#0 TATGTCCCTGGCATCATCTACGCAGTCTATGTGCTTGTTGCTCTTGACTCAGACCAGTAC 360 consensus_11867#1 ------------------------------------------------------------ consensus_11867#0 CAGAGGGAATATCATACCCTTGCTTAGGCAGTCCACTTCAATTCTGTCGAAACCTATGCT 420 consensus_11867#1 ------------------------------------------------------------ consensus_11867#0 CTATCCAGAACAGCCAAGTTCTGCTGTTGAATTGGTATCTGGTAACTTCGTCTGGGTTTT 480 consensus_11867#1 ------------------------------------------------------------ consensus_11867#0 TTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAG 540 consensus_11867#1 ------------------------------------------------------------ consensus_11867#0 GACGAGGAGGCACCTAGTCATTTGGTCGTTAAATCTCCCTATTCATCTGTTTTGTGCTAA 600 consensus_11867#1 ---------------------TTGGTCGTTAAATNNCCCTATTCATCTGTTTTGTGCTAA 39 ************* ************************ consensus_11867#0 ATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAACTG 660 consensus_11867#1 ATGTATAATTTTNTCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAACTG 99 ************ *********************************************** consensus_11867#0 TGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAAAAAA 720 consensus_11867#1 TGGTCTGGTCTCCATTNTGTAATTTTGATTCAAGAAAATAAGTTGTTGNGGGTAAAAAAA 159 **************** ******************************* *********** consensus_11867#0 ATTGGTGTTTGTATGTCAATACCGTTGCAATTCTTGCCTAT------ 761 consensus_11867#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 206 * * ** * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||