cluster # 11876

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11876 cluster # 11876 Sequences # 9 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11876#0 length = 1029 sequences # 9
consensusID : consensus_11876#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1029
fasta sequence
                              [AGACGGTCGCCTCGCTCTCGCGCGCCGCGCTCGCCGGCGCGCCCGCCGCTACACGCGCGACAGCGTCGCCCGTGAACAGGGCCGTGGTCCCTGCGGCGTCCCGGCCGCGCGGGGGACGCCTTTGCTGCCGACGCTCGCTGACGGCCGTCTCCGCGGCGGCAGGGGCTTCCCCTCCCGTCTCCCCGTCGCCTAGCCCCGATGGCGGCTCCCCCGGCGTGTGGGACGCTCTCGGCGGCGTGTCCGTGCTCGCCGCCGGCACCGGCGAAGCCGTTCAGCTCAGGGACCTGTGGGACCCCACCGAGGGGGTGGCCGTGGTGGCGCTGCTCCGGCACTTCGGGTGCTTCTGCTGCTGGGAGCTGGCCTCTGTTCTGAAGGAATCCATGGCGAAATTCGACGCTGCCGGGGCCAAGCTGATCGCCATCGGCGTCGGGACTCCTGACAAAGCTCGCATTCTCGCCGATGGGCTGCCGTTCCCT-GTTGATAGCTTGTACGCTGACCCCGAGCGCAAGGCTTACGACGTATTGGGGCTTTACCATGGTCTGGGTCGGACA-TTAATCAGTCCTGCGAAGATGTACTCGGGGCTTAATT-CCATCAAGAAGGTAACCA-AGAACTACACGCTCAAGGGCACACCA-GCAGA-CCTGA-CGGGTATCTTGCAG-CAGGGTGGTATGCTTGTGTT-CAGAGGGAAAGAGTTGCTGTACTCATGGA-AAGA-CAAAGG-CA-CGG-GTGATCATGCTCCTCTGGAT-GATGTCCTCAACGCTTGCT-GCAATCAAACTTCTT-GAGGTCTCTAG-CAGTCGGAAGATG-TGTATGTAAATATATGAAATGCTCAGCATGCCAAA-CAGAGAGCAATTAGACTC-AACAGTACTAGATGTTCGATT-AATTATGCA-TTGTTGG-TTTGCTTATGTACTTAGCATGATATTGGATTAGCTACCCAATGGACATGACACTACAGTCTGAACTCTGAACTTCTGATGTATAAGGTA-CAGTTACACCTAATCAATTAGATATCTCTACTCAA--AAAAAAAAAAAAAAAAA]

[+] EMBL AK108483             [AGACGGTCGCCTCGCTCTCGCGCGCCGCGCTCGCCGGCGCGCCCGCCGCTACACGCGCGACAGCGTCGCCCGTGAACAGGGCCGTGGTCCCTGCGGCGTCCCGGCCGCGCGGGGGACGCCTTTGCTGCCGACGCTCGCTGACGGCCGTCTCCGCGGCGGCAGGGGCTTCCCCTCCCGTCTCCCCGTCGCCTAGCCCCGATGGCGGCTCCCCCGGCGTGTGGGACGCTCTCGGCGGCGTGTCCGTGCTCGCCGCCGGCACCGGCGAAGCCGTTCAGCTCAGGGACCTGTGGGACCCCACCGAGGGGGTGGCCGTGGTGGCGCTGCTCCGGCACTTCGGGTGCTTCTGCTGCTGGGAGCTGGCCTCTGTTCTGAAGGAATCCATGGCGAAATTCGACGCTGCCGGGGCCAAGCTGATCGCCATCGGCGTCGGGACTCCTGACAAAGCTCGCATTCTCGCCGATGGGCTGCCGTTCCCT GTTGATAGCTTGTACGCTGACCCCGAGCGCAAGGCTTACGACGTATTGGGGCTTTACCATGGTCTGGGTCGGACA TTAATCAGTCCTGCGAAGATGTACTCGGGGCTTAATT CCATCAAGAAGGTAACCA AGAACTACACGCTCAAGGGCACACCA GCAGA CCTGA CGGGTATCTTGCAG CAGGGTGGTATGCTTGTGTT CAGAGGGAAAGAGTTGCTGTACTCATGGA AAGA CAAAGG CA CGG GTGATCATGCTCCTCTGGAT GATGTCCTCAACGCTTGCT GCAATCGAACTTCTT GAGGTCTCTAG CAGTCGGAAGATG TGTATGTAAATATATGAAATGCTCAGCATGCCAAA CAGAGAGCAATTAGACTC AACAGTACTAGATGTTCGATT AATTATGCA TTGTTGG TTTGCTTATGTACTTAGCATGATATTGGATTAGCTACCCAATGGACATGACA                                                                                            ]
[+] EMBL CB662861             [             GCTCTCGCGCGCCGCGCTCGCCGGCGCGCCCGCCGCTACACGCGCGACAGCGTCGCCCGTGAACAGGGCCGTGGTCCCTGCGGCGTCCCGGCCGCGCGGGGGACGCCTTTGCTGCCGACGCTCGCTGACGGCCGTCTCCGCGGCGGCAGGGGCTTCCCCTCCCGTCTCCCCGTCGCCTAGCCCCGATGGCGGCTCCCCCGGCGTGTGGGACGCTCTCGGCGGCGTGTCCGTGCTCGCCGCCGGCACCGGCGAAGCCGTTCAGCTCAGGGACCTGTGGGACCCCACCGAGGGGGTGGCCGTGGTGGCGCTGCTCCGGCACTTCGGGTGCTTCTGCTGCTGGGAGCTGGCCTCTGTTCTGAAGGAATCCATGGCGAAATTCGACGCTGCCGGGGCCAAGCTGATCGCCATCGGCGTCGGGACTCCTGACAAAGCTCGCATTCTCGCCGATGGGCTGCCGTTCCCT GTTGATAGCTTGTACGCTGACCCCGAGCGCAAGGCTTACGACGTATTGGGGCTTTACCATGGTCTGGGTCGGACA TTAATCAGTCCTGCGAAGATGTACTCGGGGCTTAATT CCATCAAGAAGGTAACCA AGAACTACACGCTCAAGGGCACACCA GCAGA CCTGA CGGGTATCTTGCAG CAGGGTGGTATGCTTGTGTT CAGAGGGAAAGAGTTGCTGTACTCATGGA AAGA CAAAGG CA CGG GTGATCATGCTCCTCTGGAT GATGTCCTCAACGCTTGCT GCAATCGAACTTCTT GAGGTCTCTAG CAGTCGGAAGATG TGTATGTAAATA                                                                                                                                                                                                                                   ]
[-] EMBL CB662862             [                                                                                                                                                                                                                                                                                                    CCCCACCGAGGGGGTGGCCGTGGTGGCGCTGCTCCGGCACTTCGGGTGCTTCTGCTGCTGGGAGCTGGCCTCTGTTCTGAAGGAATCCATGGCGAAATTCGACGCTGCCGGGGCCAAGCTGATCGCCATCGGCGTCGGGACTCCTGACAAAGCTCGCATTCTCGCCGATGGGCTGCCGTTCCCT GTTGATAGCTTGTACGCTGACCCCGAGCGCAAGGCTTACGACGTATTGGGGCTTTACCATGGTCTGGGTCGGACA TTAATCAGTCCTGCGAAGATGTACTCGGGGCTTAATT CCATCAAGAAGGTAACCA AGAACTACACGCTCAAGGGCACACCA GCAGA CCTGA CGGGTATCTTGCAG CAGGGTGGTATGCTTGTGTT CAGAGGGAAAGAGTTGCTGTACTCATGGA AAGA CAAAGG CA CGG GTGATCATGCTCCTCTGGAT GATGTCCTCAACGCTTGCT GCAATCGAACTTCTT GAGGTCTCTAG CAGTCGGAAGATG TGTATGTAAATATATGAAATGCTCAGCATGCCAAA CAGAGAGCAATTAGACTC AACAGTACTAGATGTTCGATT AATTATGCA TTGTTGG TTTGCTTATGTACTTAGCATGATATTGGATTAGCTACCCAATGGACATGACACTACAGTCTGAACTCTGAACTTCTGATGTATAAGGTA CAGTTACACCTAATCAATTAGATATCTCTCCTCAA  AAAAAAAAAAAg     ]
[+] EMBL BI813193             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             tGGCT CCGTTCCCTGGTTGATAGCTTGTACGCCGACCCCGAGCGCAAGGCTTACGACGTATTGGGGCTTTACCAT GTCT GGTCGGACA TTAATCAGTCCTGCGAAGATGTACTCGGGGCTTAATT CCATCAAGAAGGTAACCA AGAACTACACGCTCAAGGGCACACCA GCAGA CCTGA CGGGTATCTTGCAG CAGGGTGGTATGCTTGTGTT CAGAGGGAAAGAGTTGCTGTACTCATGGA AAGA CAAAGG CA CGG GTGATCATGCTCCTCTGGAT GATGTCCTCAACGCTTGCT GC ATCAAACTTCTT GAGCTCTCTAG CAGTCGGAAGATG TGTATGTAAATATATGAAATGCTCAGCATGCCAAA CAGAGAGCAATTAGACTC AACAGTACTAGATGTTCGATT AATTATGCA TTGTTGG TTTGCTTATGTACTTAGCATGATATTGGATTAGCTACCCCCTGGACATGACACTACAaaaaaaa                                                                                ]
[+] EMBL BM419781             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCGCAAGGCTTACGACGTATTGGGGCTTTACCATGGTCTGGGTCGGACACTTAATCAGTCCTGCGAAGATGTACTCGGGGCTTAATT CCATCAAGAAGGTAACCA AGAACTACACGCTCAAGGGCACACCA GCAGA CCTGA CGGGTATCTTGCAG CAGGGTGGTATGCTTGTGTT CAGAGGGAAAGAGTTGCTGTACTCATGGA AAGA CAAAGG CA CGG GTGATCATGCTCCTCTGGAT GATGTCCTCAACGCTTGCT GCAATCAAACTTCTT GAGGTCTCTAG CAGTCGGAAGATG TGTATGTAAATATATGAAATGCTCAGCATGCCCAA CAGAGAGC ATTAGACTC  ACAGTACTAGATGTTCGATT AATTATGCACTTGTTGG TTTGCTTATGTACTTAGCATGATATTGGATTAGCTACCC ATGGACATGACACTAC GTCTGAACTCTGAACTTCTGATGTATAAGGTA CAGTTACACCTAATCAATTAGATATCTCTACTCAATTAAAAACAGAAAAAAAAA]
[+] EMBL BM420057             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCAT GTCTGGTTCGGACA TTAATCAGTCCTGCGAAGATGTACTCGGGGCTTAATT CCATCAAGAAGGTAACCA AGAACTACACGCTCAAGGGCACACCA GCAGA CCTGA CGGGTATCTTGCAG CAGGGTGGTATGCTTGTGTT CAGAGGGAAAGAGTTGCTGTACTCATGGA AAGA CAAAGG CA CGG GTGATCATGCTCCTCTGGAT GATGTCCTCAACGCTTGCT GCAATCAAACTTCTT GAGGTCTCTAG CAGTCGGAAGATG TGTATGTAAATATATGAAATGCTCAGCATGCCAAA CAGAGAGCAATTAGACTC AACAGTACTAGATGTTCGATT AATTATGCA TTGTTGG TTTGCTTATGTACTTAGCATGATATTGGATTAGCTACCCAATGGACATGACACTACAGTCTGAACTCTGAACTTCTGATGTATAAGGTA CAGTTACACCTAATCAATTAGATATCTCTACTCAATTAAAAACAGAAAAAAAAA]
[+] EMBL BM420709             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACTCGGGGCTTAATTCCCATCAAGAAGGTAACCANAGAACTACACGCTCAAGGGCACACCACGCAGACCCTGACCGGGTATCTTGCAGCCAGGGTGGTATGCTTGTGTTCCAGAGGGAAAGAGTTGCTGTACTCATGGA AAGACCAAAGGCCACCGG GTGATCATGCTCCTCTGGAT GATGTCCTCAACGCTTGCT GCAATCAAACTTCTT GAGGTCTCTAGCCAGTCGGAAGATG TGTATGTAAATATATGAAATGCTCAGCATGCCAAACCAGAGAGCAATTAGACTC AACAGTACTAGATGTTCGATT AATTATGCA TTGTTGG TTTGCTTATGTACTTAGCATGATATTGGATTAGCTACCCAATGGACATGACACTACAGTCTGAACTCTGAACTTCTGATGTATAAGGTA CAGTTACACCTAATCAATTAGATATCTCTACTCAA  TTAAAAAA         ]
[+] EMBL BI801906             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TAATT CCATCAAGAAGGTAACCA AGAACTACACGCTCAAGGGCACACCA GCAGA CCTGA CGGGTATCTTGCAG CA GGTGGTATGCTTGTGTT CAGAGGGAAAGAGTTGCTGTACTCATGGA AAGA CCAAGG CA CGGCGTGATCATGCTCCTCTGGATCGATGTCCTCAACGCTTGCTCGCAATCAAACTTCTT GAGGTCTCTAG CAGTCGGAAGATG TGTATGTAAATATATGAAATGCTCAGCATGCC AA CAGAGAGCCATTAGACTCTAACAGTACTAGATGTTCGATT AATTATGCA TTGTTGG TTTGCTTATGTACTTAGCATGATATTGGATTAGCTACCCAATGGACATGACACTACAGTCTGAACTCTGAACTTCTGATGTATAAGGTACCAGTTACACCTAATCCATTAGATATCTCTACTCAA  TTAAAAAAAAA      ]
[+] EMBL BI804774             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGGCACACCA GCAGA CCTGA CGGGTATCTTGCAGACAGGGTGGTATGCTTGTGTTCCAGAGGGAAAGAGTTGCTGTACTCATGGACAAGACCCAAGG CA CGG GTGATCATGCTCCTCTGGAT GATGTCCTCAACGCTTGCT GCAATCCAACTTCTTCGAGGTCTCTAG CAGTCGGAAGATGCTGTATGTAAATATATGAAATGCTCAGCATGCC AA CAGAGAGCAATTAGACTC AACAGTACTAGATGTTCGATTCAATTATGCA TTGTTGGCTTTGCTTATGTACTTAGCATGATATTGGATTAGCTACCCCATGGACATGAaaaaaaaaa                                                                                     ]




>consensus_11876#0
AGACGGTCGCCTCGCTCTCGCGCGCCGCGCTCGCCGGCGCGCCCGCCGCTACACGCGCGA
CAGCGTCGCCCGTGAACAGGGCCGTGGTCCCTGCGGCGTCCCGGCCGCGCGGGGGACGCC
TTTGCTGCCGACGCTCGCTGACGGCCGTCTCCGCGGCGGCAGGGGCTTCCCCTCCCGTCT
CCCCGTCGCCTAGCCCCGATGGCGGCTCCCCCGGCGTGTGGGACGCTCTCGGCGGCGTGT
CCGTGCTCGCCGCCGGCACCGGCGAAGCCGTTCAGCTCAGGGACCTGTGGGACCCCACCG
AGGGGGTGGCCGTGGTGGCGCTGCTCCGGCACTTCGGGTGCTTCTGCTGCTGGGAGCTGG
CCTCTGTTCTGAAGGAATCCATGGCGAAATTCGACGCTGCCGGGGCCAAGCTGATCGCCA
TCGGCGTCGGGACTCCTGACAAAGCTCGCATTCTCGCCGATGGGCTGCCGTTCCCTGTTG
ATAGCTTGTACGCTGACCCCGAGCGCAAGGCTTACGACGTATTGGGGCTTTACCATGGTC
TGGGTCGGACATTAATCAGTCCTGCGAAGATGTACTCGGGGCTTAATTCCATCAAGAAGG
TAACCAAGAACTACACGCTCAAGGGCACACCAGCAGACCTGACGGGTATCTTGCAGCAGG
GTGGTATGCTTGTGTTCAGAGGGAAAGAGTTGCTGTACTCATGGAAAGACAAAGGCACGG
GTGATCATGCTCCTCTGGATGATGTCCTCAACGCTTGCTGCAATCAAACTTCTTGAGGTC
TCTAGCAGTCGGAAGATGTGTATGTAAATATATGAAATGCTCAGCATGCCAAACAGAGAG
CAATTAGACTCAACAGTACTAGATGTTCGATTAATTATGCATTGTTGGTTTGCTTATGTA
CTTAGCATGATATTGGATTAGCTACCCAATGGACATGACACTACAGTCTGAACTCTGAAC
TTCTGATGTATAAGGTACAGTTACACCTAATCAATTAGATATCTCTACTCAAAAAAAAAA
AAAAAAAAA
clustalw multiple alignements is not computed in this case