These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 879 fasta sequence [CAGCTTGCCTATGAAGCCGTCTTCTTCTTTAAAAAAATGTAGAGGCTACATCCACTTATTCACGTATGTCCCATTCTGAAGTTCCACTTATTCACGTATGTCCCATTCTGAAGTGCAAATTACAAGAACATAAACTTCTATGAAGTCCAGATCAACATCACCATCTCGAACTATACACTTCAGAGAAATTATTGTAACCTATCTTGACAGGAAGTAGTTGCAAATGTACACCTATCTTTGCGTATAGTGTGTTTGGCTGTCCATCTGTAGTAGTTCCATTGGAAAACCCCATAACTACCTGATGGTAGCGTGGAGTCATTCATTCCCAGAAGACCGTGCATTTGCCTCAATCCAGTCAAAAG-CGAGTGGGCTAAGGAAGGCATCTGGGATTCCGAAGGAACTGACAATAGCAAGTGCGTGGGGCCTGAGTTCACTGCACAGTGTCATCACTTCTTTCCTAGCAGCGGCTACATTCTCTCGCGATAGGCAACCATATCTCAAAAAGGATGCAGATTCGTCTATGCAAACCATAACATATAAAGACCTTAGTAAGCCCAATATATCCTTTAAAGAACCAGTAGGAATATTCTTCTCATCCTCCAAAAATATTTGCAAAATTGTGCGCTCAGTAAATGCTCTAGCTAAGTCTTCAGCGAGTTGGTAGCTCAGCATCAAAGCCTTCTCTCTGTTTTCTCCTTGTGCCAGATAGTTAGAAACCTCCGTGGTGAATCGTTTCAGTAAATCTCGCTCCCTCAAGCAGAGCAAGTCCATCTGGAAACTGGAGCTTCTTAGTGTGCCACTTGTCAGATAATCAGGAATAAC-AGGGCAAGGACCATTCAAGTGTTCCAAGCCCAATCCCTTGAATGGTTGATTCTTCCT] [+] EMBL CB666502 [CAGCTTGCCTATGAAGCCGTCTTCTTCTTTAAAAAAATGTAGAGGCTACATCCACTTATTCACGGATGTCCCATTCTGAAGTTCCACTTATTCACGTATGTCCCATTCTGAAGTGCAAATTACAAGAACATAAACTTCTATGAAGTCCAGATCAACATCACCATCTCGAACTATACACTTCAGAGAAATTATTGTAACCTATCTTGACAGGAAGTAGGTGCAAATGTACACCTATCTTTGCGTATAGTGTGTTTGGCTGTCCATCTGTAGTAGTTCCATTGGAAAACCCCATAACTACCTGATGGTAGCGTGGAGTCATTCATTCCCAGAAGACCGTGCATTTGCCTCAATCCAGTCAAAAG CGAGTGGGCTAAGGAAGGCATCTGGGATTCCGAAGGAACTGACAATAGCAAGTGCGTGGGGCCTGAGTTCACTGCACAGTGTCATCACTTCTTTCCTAGCAGCGGCTACATTCTCTCGCGATAGGCAACCATATCTCAAAAAGGATGCAGATTCTTCTATGCAAACCATAACATATAAAGACCTTAGTAAGCCCAATATATCCTTTAAAGAACCAGTAGGAATATTCTTCTCATCCTCCAAAAATATTTGCAAAATTGTGCGCTCAGTAAATGCTCTAGCTAAGTCTTCAGCGAGTTGGTAGCTCAGCATCAAAGCCTTCTCTCTGTTTTCTCCTTGTGCCAGATAGTTAGAAACCTCCGTGGTGAATCGTTTCAGTAAATCTCGCTCCCTCAAGCAGAGCAAGTCCATCTGGAAACTGGAGCTTCTTAGTGTGCCACTTGTCAGATAATCAGGAATAAC AGGGCAAGGg ] [+] EMBL CB666457 [CAGCTTGGCTATGAAGCCGTCTTCTTCTTTAAAAAAATGTAGAGGCTACATCCACTTATTCACGTATGTCCCATTCTGAAGTTCCACTTATTCACGTATGTCCCATTCTGAAGTGCAAATTACAAGAACATAAACTTCTATGAAGTCCAGATCAACATCACCATCTCGAACTATACACTTCAGAGAAATTATTGTAACCTATCTTGACAGGAAGTAGTTGCAAATGTACACCTATCTTTGCGTATAGTGTGTTTGGCTGTCCATCTGTAGTAGTTCCATTGGAAAACCCCATAACTACCTGATGGTAGCGTGGAGTCATTCATTCCCAGAAGACCGTGCATTTGCCTCAATCCAGTCAAAAG CGAGTGGGCTAAGGAAGGCATCTGGGATTCCGAAGGAACTGACAATAGCAAGTGCGTGGGGCCTGAGTTCACTGCACAGTGTCATCACTTCTTTCCTAGCAGCGGCTACATTCTCTCGCGATAGGCAACCATATCTCAAAAAGGATGCAGATTCGTCTATGCAAACCATAACATATAAAGACCTTAGTAAGCCCAATATATCCTTTAAAGAACCAGTAGGAATATTCTTCTCATCCTCCAAAAATATTTGCAAAATTGTGCGCTCAGTAAATGCTCTAGCTAAGTCTTCAGCGAGTTGGTAGCTCAGCATCAAAGCCTTCTCTCTGTTTTCTCCTTGTGCCAGATAGTTAGAAACCTCCGTGGTGAATCGTTTCAGTAAATCTCGCTCCCTCAAGCAGAGCAAGTCCATCTGGAAACTGGAGCTTCTTAGTGTGCCACTTG ] [+] EMBL CB662239 [ AAAAATGTAGAGGCTACATCCACTTATTCACGTATGTCCCATTCTGAAGTTCCACTTATTCACGTATGTCCCATTCTGAAGTGCAAATTACAAGAACATAAACTTCTATGAAGTCCAGATCAACATCACCATCTCGAACTATACACTTCAGAGAAATTATTGTAACCTATCTTGACAGGAAGTAGTTGCAAATGTACACCTATCTTTGCGTATAGTGTGTTTGGCTGTCCATCTGTAGTAGTTCCATTGGAAAACCCCATAACTACCTGATGGTAGCGTGGAGTCATTCATTCCCAGAAGACCGTGCATTTGCCTCAATCCAGTCAAAAG CGAGTGGGCTAAGGAAGGCATCTGGGATTCCGAAGGAACTGACAATAGCAAGTGCGTGGGGCCTGAGTTCACTGCACAGTGTCATCACTTCTTTCCTAGCAGCGGCTACATTCTCTCGCGATAGGCAACCATATCTCAAAAAGGATGCAGATTCGTCTATGCAAACCATAACATATAAAGACCTTAGTAAGCCCAATATATCCTTTAAAGAACCAGTAGGAATATTCTTCTCATCCTCCAAAAATATTTGCAAAATTGTGCGCTCAGTAAATGCTCTAGCTAAGTCTTCAGCGAGTTGGTAGCTCAGCATCAAAGCCTTCTCTCTGTTTTCTCCTTGTGCCAGATAGTTAGAAACCTCCGTGGTGAATCGTTTCAGTAAATCTCGCTCCCTCAAGCAGAGCAAGTCCATCTGGAAACTGGAGCTTCTTAGTGTGCCACTTGTCAGATAATCAGGAATAACNAGGGC AGGACCATTCAAGTGTTCCAAGCCC ATCCCTTGAATGGTTGATTCTc ] [-] EMBL AA752520 [ GGCTACACCCACTTATTCACGTATG CCCATTCTGAAG TCCACTTATTCACGTATGTCCCATTCTGAAGTGCAAATTACAAGAACATAAACTTCTATGAAGTCCAGATCAACATCACCATCTCGAACTATACACTTCAGAGAAATTATTGTAACCTATCTTGACAGGAAGTAGTTGCAAATGTACACCTATCTTTGCGTATAGTGTGTTTGGCTGTCCATCTGTAGTAGTTCCATTGGHAYACCCCATAACTACCTGATGGTAGCGTGGAGTCATTCATTCCCAGAAGACCGTGCATTTGCCTCAATCCAGTCAAAAG CGAGTGGGCTAAGGAAGGCATCTGGGATTCCGAAGGAACTGACAATAGCAAGTGCGTGGGGCCTGAGTTCACTGCACAGTGTCATCACTTCTTTCCTAGCAGCGGCTACATTCTCTCGCGATAGGCAACCATATCTCAAAAAGGATGCAGATTCGTC ] [-] EMBL BI118860 [ TTGCGTATAGTGTGTTTGGCTGTCCATCTGTAGTAGTTCCATTGGAAAACCCCATAACTACCTGATGGTAGCGTGGAGTCATTCATTCCCAGAAGACCGTGCATTTGCCTCAATCCAATCAAAAGCCAAGTGGGCTAAGGGAGGCATCTGGGATTCCGAAGGAACTGACAATAGCAAGTGCGTGGGGCCTGAGTTCACTGCACAGTGTCATCACTTCTTTCCTAGCAGCGGCTACATTCTCTCGCGATAGGC ACCATATCTCAAAAAGGATGCAGATTCGTCTATGCAAACCATAACATATAAAGACCTTAGTAAGCCCAATATATCCTTTAAAGAACCAGTAGGAATATTCTTCTCATCCTCCAAAAATATTTGCAAAATTGTGCGCTCAGTAAATGCTCTAGCTAAGTCTTCAGCGAGTTGGTAGCTCAGCATCAAAGCCTTCTCTCTGTTTTCTCCTTGTGCCAGATAATTAGAAACCTCCGTGGTGAATCGTTTCAGTAAATCTCGCTCCCTCAAGCAGAGCAAGTCCATCTGGAAACTGGAGCTTCTTAGTGTGCCACTTGTCAGATAATCAGGAATAAC AGGGCAAGGACCATTCAAGTGTTCCAAGCCCAATCCCTTGAATGGTTGATTCTTCCT] [-] EMBL CA999449 [ ATTCATTCCCAGAAGACCGTGCATTTGCCTCAATCCAGTCAAAAG CGAGTGGGCTAAGGAAGGCATCTGGGATTCCGAAGGAACTGACAATAGCAAGTGCGTGGGGCCTGAGTTCACTGCACAGTGTCATCACTTCTTTCCTAGCAGCGGCTACATTCTCTCGCGATAGGCAACCATATCTCAAAAAGGATGCAGATTCGT ] [-] EMBL CB666458 [ ATTGTGCGCTCAGTAAATGCTCTAGCTAAGTCTTCAGCGAGTTGGTAGCTCAGCATCAAAGCCTTCTCTCTGTTTTCTCCTTGTGCCAGATAGTTAGAAACCTCCGTGGTGAATCGTTTCAGTAAATCTCGCTCCCTCAAGCAGAGCAAGTCCATCTGGAAACTGGAGCTTCTTAGTGTGCCACTTGTCAGATAATCAGGAATAAC AGGGCAAGGACCATTCAAGTGTTCCAAGCCCAATCCCTTGAATGGTTGATTCTTCCT] [-] EMBL CB666503 [ TCAGCATCAAAGCCTTCTCTCTGTTTTCTCCTTGTGCCAGATAGTTAGAAACCTCCGTGGTGAATCGTTTCAGTAAATCTCGCTCCCTCAAGCAGAGCAAGTCCATCTGGAAACTGGAGCTTCTTAGTGTGCCACTTGTCAGATAATCAGGAATAAC AGGGCAAGGACCATTCAAGTGTTCCAAGCCCAATCCCTTGAATGGTTGATTCTTCCT] [-] EMBL CB662240 [ GAAACATCGGTGGTGAATCGTTTCAGTAAATCTCGCTCCCTCAAGCAGAGCAAGTCCATCTGGAAACTGGAGCTTCTTAGTGTGCCACTTGTCAGATAATCAGGAATAAC AGGGCAAGGACCATTCAAGTGTTCCAAGCCCAATCCCTTGAATGGTTGATTCTTCCT] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||