These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1301 fasta sequence [GAGGTGGGAAGCCAAAGTGGGAGAAGCAAAAATATTCTCAGGGCAGGTAAGGTAAGCGAAGGCGAGAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGGGGATGAGCGCGGCGGCGGAGGAGGCGGCTGCGGCGGCGGCGGCGGAGGAGGTGGAGGGGGTGGAGGCGGGGAAGAAGGGCGTGGCGGATGCGAAGGGGAAGGGGAAGGAGAAGGTGGTGGTGGCGGAGGAGGATTCTGCGGTGGCGGCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTAC-TGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGG-TATCAAGAAACT---GATTCCAGAAG-CATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAAACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTAGGCCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAGACAGTTAGCTCTTTACAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTATCCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGAAGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGTA] [+] EMBL AK065847 [GAGGTGGGAAGCCAAAGTGGGAGAAGCAAAAATATTCTCAGGGCAGGTAAGGTAAGCGAAGGCGAGAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGGGGATGAGCGCGGCGGCGGAGGAGGCGGCTGCGGCGGCGGCGGCGGAGGAGGTGGAGGGGGTGGAGGCGGGGAAGAAGGGCGTGGCGGATGCGAAGGGGAAGGGGAAGGAGAAGGTGGTGGTGGCGGAGGAGGATTCTGCGGTGGCGGCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTAC TGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGG TATCAAGAAACT GATTCCAGAAG CATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAAACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTAGGCCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAGACAGTTAGCTCTTTACAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTATCCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGAAGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGT ] [+] EMBL CB634137 [ TCTGCGGCGGCGGCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAATCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTAC TGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGG TATCAAGAAACT GATTCCAGAAG CATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTA ] [+] EMBL AU056458 [ TCTGCGGTGGCGGCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTAC TGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGGTTATCAAGAAACTGCAGATTCCAGAAGCCATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCC ] [+] EMBL C72739 [ GCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTAC TGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGANGCTATACTTGTTTGAGGCACAANGCTGG TATCAAG AACT GANTCCAGAAG CATTTCCTGTATAGAAATGAAAGCTGAA GNCCAGCTTCCCGGAAAAG ] [+] EMBL C72738 [ CGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGCGCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGAGGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTACTTGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGANGCACAAAGCTGG TATCAAGAACCT GCTTCCAGAAG CATTTCCTGTATAGAAATGAAANCTGAAGG CAACCTTCCCGG ] [+] EMBL CB630860 [ ATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAAACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTAGGCCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAGACAGTTAGCTCTTTACAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTATCCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGAAGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGT ] [-] EMBL CB683446 [ ACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTAGGCCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAGACAGTTAGCTCTTTTCAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTATCCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGAAGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGTA] [-] EMBL CB634138 [ ATTGGTGAACGATGGAACAATTTAGGCCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAGACAGTTAGCTCTTTACAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTATCCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGAAGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGTA] consensusID : consensus_11956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [ATTCTCCCGGCAGGTAAGGTAAGCGAAGGCGAGAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTACTGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGGTATCAAGAAACTGATTCCAGAAGCATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAAACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTACGCCCTGAAGAGTAA] [+] EMBL CB660189 [ATTCTCCCGGCAGGTAAGGTAAGCGAAGGCGAGAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGTGCCAATTATTGGTGGAAAAGACCTTGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTCCGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTACTGCGACAAATGCTTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTTGTTTGAGGCACAAGGCTGGTATCAAGAAACTGATTCCAGAAGCATTTCCTGTATAGAAATGAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGACCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGGCTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCACCGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCATACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAAACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGAATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTACGCCCTGAAGAGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11956#0 GAGGTGGGAAGCCAAAGTGGGAGAAGCAAAAATATTCTCAGGGCAGGTAAGGTAAGCGAA 60 consensus_11956#1 ------------------------------------------------------------ consensus_11956#0 GGCGAGAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGGGGATGAGCGCGGCGGCGGA 120 consensus_11956#1 ------------------------------------------------------------ consensus_11956#0 GGAGGCGGCTGCGGCGGCGGCGGCGGAGGAGGTGGAGGGGGTGGAGGCGGGGAAGAAGGG 180 consensus_11956#1 ------------------------------------------------------------ consensus_11956#0 CGTGGCGGATGCGAAGGGGAAGGGGAAGGAGAAGGTGGTGGTGGCGGAGGAGGATTCTGC 240 consensus_11956#1 ------------------------------------------------------------ consensus_11956#0 GGTGGCGGCGGGCTCCGGGGGAAGCGGAGGCGGGAGGAGGACGTTGGTGGCGTACCCGGC 300 consensus_11956#1 ------------------------------------------------------------ consensus_11956#0 GCGGGTTGCGGGGTACAAGGACGTGGTGGCGGACGCGGCGGTCTTCAGGAGGGCGCTCGA 360 consensus_11956#1 ----------------------------ATTCTCCCGGCAGGTAAGGTAAGCGAAGGCGA 32 * **** * ** * *** consensus_11956#0 GGGGTTGCACGCCCAGATGGGGACAAAGCTCAAGGTGCCAATTATTGGTGGAAAAGACCT 420 consensus_11956#1 GAAGAGAAGAGACGAGAAGAGAAGAGAGAGAAGGGTGCCAATTATTGGTGGAAAAGACCT 92 * * * * *** * * * * ** * *************************** consensus_11956#0 TGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTC 480 consensus_11956#1 TGATCTTCATCAGCTGTTTAAGGAGGTCACTTCACGAGGTGGCATTGATAAGGTGAAGTC 152 ************************************************************ consensus_11956#0 CGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTACTGCGACAAATGC 540 consensus_11956#1 CGATAATAGATGGAGGGAAGTAACAGCATCATTTATTTTCCCTGCTACTGCGACAAATGC 212 ************************************************************ consensus_11956#0 TTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTT 600 consensus_11956#1 TTCTTTTATGTTGAAGAAATACTACATGTCACTATTATACCATTTTGAGAGGCTATACTT 272 ************************************************************ consensus_11956#0 GTTTGAGGCACAAGGCTGGTATCAAGAAACTGATTCCAGAAGCATTTCCTGTATAGAAAT 660 consensus_11956#1 GTTTGAGGCACAAGGCTGGTATCAAGAAACTGATTCCAGAAGCATTTCCTGTATAGAAAT 332 ************************************************************ consensus_11956#0 GAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGA 720 consensus_11956#1 GAAAGCTGAAGGTCAAGCTTCCCGGAAAAGGAAAAGAGGAAGCAATTCTTGTTCTTCAGA 392 ************************************************************ consensus_11956#0 CCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGG 780 consensus_11956#1 CCTAGCTGCTTCTTTGGATAATGATGTACAAGTGATAATTGATGGTAAGTTTGAACATGG 452 ************************************************************ consensus_11956#0 CTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCAC 840 consensus_11956#1 CTACATAGTTACCGTTATCATGGGCTCAAAATCAACGAAAGCGGTACTCTATAATTGCAC 512 ************************************************************ consensus_11956#0 CGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCAT 900 consensus_11956#1 CGAAGAACCTGCAGTGCCAACTGCGGTGCCTCATGTTGCAATTGACAGCGCTGAGGGCAT 572 ************************************************************ consensus_11956#0 ACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAA 960 consensus_11956#1 ACGTCCTCGCCGCCGCCGCCGTAGGAAGAAGTTAAGTACAACAGACCCCAACCATCCTAA 632 ************************************************************ consensus_11956#0 ACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGA 1020 consensus_11956#1 ACCAAACAGGAGCGGCTACAATTTCTTCTTCCAAGATCAGCACAGGAAGCTCAAGCCAGA 692 ************************************************************ consensus_11956#0 ATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTAGG 1080 consensus_11956#1 ATATCCTGGACAAGACAGGCTTATCAGCAAGATGATTGGTGAACGATGGAACAATTTACG 752 ********************************************************** * consensus_11956#0 CCCTGAAGATAAAGCAGTATATCAAGAAAAAGGTGTAGAGGACAAGGCAAGGTACCAGAG 1140 consensus_11956#1 CCCTGAAGAGTAA----------------------------------------------- 765 ********* ** consensus_11956#0 ACAGTTAGCTCTTTACAGAGAACAGAGAACAGGCCAGCCAATCAGCAACGCGGTGCCTAT 1200 consensus_11956#1 ------------------------------------------------------------ consensus_11956#0 CCAGCAGAGACTTCCTCAGAAAGAAGTGACGATTGATGAGGTGGACTCTAAAGTCAGTGA 1260 consensus_11956#1 ------------------------------------------------------------ consensus_11956#0 AGGTGATATCCTGCTGTCCAACCAAGGATACAGCAGCAGTA 1301 consensus_11956#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||