These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1504 fasta sequence [GCTTAGAGAGCAGACAACAAACTTTTGTCCTGATTCATCTAAACTCTTACCTGACTGCAATCAAGGCCAATTGTAATCCAATAATCTCTGATCTTGTTCTGGTTGCACGTTGAGATGATGGTGCCCTCTTCACGGAAAGTCCGTGTTTTCTGCTCTGATCCTGATGCCACTGACTCCTCTGATGAAGATGACCAGAATAAGAAGGAAAGGAGATTTTCAAGGGAAATACTAATTCCAATGGAAAACTCCAAGGCATCCAAACCTGTTAAGACCCTTGTTCAATGTGGCACAAAGACTGTAAAGGATTCCGAGAAGGAACCGACGAGCAAATACAGGGGTGTGCGCCGGCGGGCGTGGGGCAAATGGGCTGCAGAAATACGTGACCCTGTGCGAAAATCAAGGAAATGGATTGGCACATTTAACAGTGAGGAGGAGGCCGCTGCGGCATATCTTGCACAATCAAACCAGTTCCATGAAGAGTTGATGGCCTTGAAAATCCAATCTTCTGTATCAGAGCAGGAAGATTTGTCAAGCTCTGTTACTATATCCTGCGTGTCCTCATCTCAGTCATGTGACCAGAAGATTCAGGCAAAGCCACAAGAACACAAGAGAGTGTCAGTGGTGGTTAACCGTGAGACCGTTGAGCAGAAGTTTAAGGCACAGCCACAAGCTCAGAAGATTAAGGCACAGCCAGAAGTGCAGAAGAGAGTGTCAGTGAAGATTAGCCATGAGACTGAGGATGAGCACTTGCTGAACTTGCCGTCCACGCC-TAAAGGCAAA--GAGATTT-CGATGGG-CGCTGTT-CTTGGCAGGA-TAGAT-GAGATTCCTGT-GAGCAACTGTGTGGG-CCATATTGAT-GAATTT-CCACCT-GATGATTT-CACTAGGCTTGCAGATGCG-TTCCCAGTTAGTGATTTTATCGGCATGGCAGATGTGCCACTGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTC-GACCT-CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATTGTAAATACCCTTACTAATTTTAGGCAATGAACAGCTAAGAATAGTTCATTGTTGAACAAAAATGATTAATT] [+] EMBL AK100575 [GCTTAGAGAGCAGACAACAAACTTTTGTCCTGATTCATCTAAACTCTTACCTGACTGCAATCAAGGCCAATTGTAATCCAATAATCTCTGATCTTGTTCTGGTTGCACGTTGAGATGATGGTGCCCTCTTCACGGAAAGTCCGTGTTTTCTGCTCTGATCCTGATGCCACTGACTCCTCTGATGAAGATGACCAGAATAAGAAGGAAAGGAGATTTTCAAGGGAAATACTAATTCCAATGGAAAACTCCAAGGCATCCAAACCTGTTAAGACCCTTGTTCAATGTGGCACAAAGACTGTAAAGGATTCCGAGAAGGAACCGACGAGCAAATACAGGGGTGTGCGCCGGCGGGCGTGGGGCAAATGGGCTGCAGAAATACGTGACCCTGTGCGAAAATCAAGGAAATGGATTGGCACATTTAACAGTGAGGAGGAGGCCGCTGCGGCATATCTTGCACAATCAAACCAGTTCCATGAAGAGTTGATGGCCTTGAAAATCCAATCTTCTGTATCAGAGCAGGAAGATTTGTCAAGCTCTGTTACTATATCCTGCGTGTCCTCATCTCAGTCATGTGACCAGAAGATTCAGGCAAAGCCACAAGAACACAAGAGAGTGTCAGTGGTGGTTAACCGTGAGACCGTTGAGCAGAAGTTTAAGGCACAGCCACAAGCTCAGAAGATTAAGGCACAGCCAGAAGTGCAGAAGAGAGTGTCAGTGAAGATTAGCCATGAGACTGAGGATGAGCACTTGCTGAACTTGCCGTCCACGCC TAAAGGCAAA GAGATTT CGATGGG CGCTGTT CTTGGCAGGA TAGAT GAGATTCCTGT GAGCAACTGTGTGGG CCATATTGAT GAATTT CCACCT GATGATTT CACTAGGCTTGCAGATGCG TTCCCAGTTAGTGATTTTATCGGCATGGCAGATGTGCCACTGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTC GACCT CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACGGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTT ] [+] EMBL C26495 [GCTTAGAGAGCAGACAACAAACTTTTGTCCTGATTCATCTAAACTCTTACCTGACTGCAATCAAGGCCAATTGTAATCCAATAATCTCTGATCTTGTTCTGGTTGCACGTTGAGATGATGGTGCCCTCTTCACGGAAAGTCCGTGTTTTCTGCTCTGATCCTGATGCCACTGACTCCTCTGATGAAGATGACCAGAATAAGAAGGAAAGGAGATTTTCAAGGGAAATACTAATTCCAATGGAAAACTCCAAGGCATCCAAACCTGTT AGGNCCTTG TCAA ] [+] EMBL CB642065 [ AAGTCCGTGTTTTCTGCTCTGATCCTGATGCCACTGACTCCTCTGATGAAGATGACCAGAATAAGAAGGAAAGGAGATTTTCAAGGGAAATACTAATTCCAATGGAAAACTCCAAGGCATCCAAACCTGTTAAGACCCTTGTTCAATGTGGCACAAAGACTGTAAAGGATTCCGAGAAGGAACCGACGAGCAAATACAGGGGTGTGCGCCGGCGGGCGTGGGGCAAATGGGCTGCAGAAATACGTGACCCTGTGCGAAAATCAAGGAAATGGATTGGCACATTTAACAGTGAGGAGGAGGCCGCTGCGGCATATCTTGCACAATCAAACCAGTTCCATGAAGAGTTGATGGCCTTGAAAATCCAATCTTCTGTATCAGAGCAGGAAGATTTGTCAAGCTCTGTTACTATATCCTGCGTGTCCTCATCTCAGTCATGTGACCAGAAGATTCAGGCAAAGCCACAAGAACACAAGAGAGTGTCAGTGGTGGTTAACCGTGAGACCGTTGAGCAGAAGTTTAAGGCACAGCCACAAGCTCAGAAGATTAAGGCACAGCCAGAAGTGCAGAAGAGAGTGTCAGTGAAGATTAGCCATGAGACTGAGGATGAGCACTTGCTGAACTTGCCGTCCACGCC TAAAGGCAAA GAGATTT CGATGGG CGCTGTT CTTGGCAGGA TAGAT GAGATTCCTGT GAGCAACTGTGTGGG CCATATTGAT GAATTT CCACCT GATGATTT CACTANGCTTGCAGATGCG TTCCCAGTTAGTGATTTTATCGGCATGGCAGATGTGCCACTGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCC ] [+] EMBL AU056308 [ ccngcCCACCCCTTAAAGNCAAAAGGAGATTTCCGATGGGCCGCTGTTCCTTGNCAGGATTAGATGGAGATCCCTGTGGAGCAACTGTGTGGGCCCATATTGATGGAATTTCCCACCTGGATGATTTNCACTAGGCTTGCAGATGCGTTTCCCANTTAGTGATTTTANCGGCATGGCAGATGTCCCA TGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTC GACCTNCAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATAaaaaaa ] [-] EMBL CB642066 [ T GAGATTCCTGT GAGCAACTGTGTGGG CCATATTGAT GAATTT CCACCT GATGATTT CACTAGGCTTGCAGATGCG TTCCCAGTTAGTGATTTTATCGGCATGGCAGATGTGCCACTGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATTTGAAGTTC GACCT CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTTTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATTTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCCCCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATTTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATTGTAAATACCCTTACTAATTTTAGGCAATGAACAGCTAAGAATAGTTCATTGTTGAACAAAAATGATTAATT] [+] EMBL AU068404 [ CAG TAGTGA TTTA CGGCAT GCAGATGTNCCACTGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTC GACCT CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAAaaaaaaaa ] [+] EMBL AU181401 [ TGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTC GACCT CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTTCTTGTGATaaaaaa ] [-] EMBL OS2033A [ AGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTCGGCCCT CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTG ] consensusID : consensus_11972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [GNGAATCCTNCACCTAAGAAANGATTGGGGNTTTTGGGAANGGATNCGGNCANGNGGGCAAGNNGATTCACCGNGGTTCATGGGTGAANNGGNTCCAGTAGGGATTNTNGGCNGGGAGAGGGCATGGGGGGGAAANATGGCCTGGCANAANTTACCACCTGCCGTGCCTNTTAACAANATTGGAAGTTGGACCTTCATGCGGAATTCAATGGGNAGGGTTGGATTTGGTTTCATTGGGAACAGGAATTCAACTGTCTTGGATGGGCTGGAATCCTGTTCTATGGGGAAAACTTCTTGTTGATGGAATGGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTTCAACATTGCTGGCAGGCGGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATTGTAAAT] [-] EMBL BE229113 [GNGAATCCTNCACCTAAGAAANGATTGGGGNTTTTGGGAANGGATNCGGNCANGNGGGCAAGNNGATTCACCGNGGTTCATGGGTGAANNGGNTCCAGTAGGGATTNTNGGCNGGGAGAGGGCATGGGGGGGAAANATGGCCTGGCANAANTTACCACCTGCCGTGCCTNTTAACAANATTGGAAGTTGGACCTTCATGCGGAATTCAATGGGNAGGGTTGGATTTGGTTTCATTGGGAACAGGAATTCAACTGTCTTGGATGGGCTGGAATCCTGTTCTATGGGGAAAACTTCTTGTTGATGGAATGGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTTCAACATTGCTGGCAGGCGGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATTGTAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11972#0 GCTTAGAGAGCAGACAACAAACTTTTGTCCTGATTCATCTAAACTCTTACCTGACTGCAA 60 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 TCAAGGCCAATTGTAATCCAATAATCTCTGATCTTGTTCTGGTTGCACGTTGAGATGATG 120 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 GTGCCCTCTTCACGGAAAGTCCGTGTTTTCTGCTCTGATCCTGATGCCACTGACTCCTCT 180 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 GATGAAGATGACCAGAATAAGAAGGAAAGGAGATTTTCAAGGGAAATACTAATTCCAATG 240 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 GAAAACTCCAAGGCATCCAAACCTGTTAAGACCCTTGTTCAATGTGGCACAAAGACTGTA 300 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 AAGGATTCCGAGAAGGAACCGACGAGCAAATACAGGGGTGTGCGCCGGCGGGCGTGGGGC 360 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 AAATGGGCTGCAGAAATACGTGACCCTGTGCGAAAATCAAGGAAATGGATTGGCACATTT 420 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 AACAGTGAGGAGGAGGCCGCTGCGGCATATCTTGCACAATCAAACCAGTTCCATGAAGAG 480 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 TTGATGGCCTTGAAAATCCAATCTTCTGTATCAGAGCAGGAAGATTTGTCAAGCTCTGTT 540 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 ACTATATCCTGCGTGTCCTCATCTCAGTCATGTGACCAGAAGATTCAGGCAAAGCCACAA 600 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 GAACACAAGAGAGTGTCAGTGGTGGTTAACCGTGAGACCGTTGAGCAGAAGTTTAAGGCA 660 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 CAGCCACAAGCTCAGAAGATTAAGGCACAGCCAGAAGTGCAGAAGAGAGTGTCAGTGAAG 720 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 ATTAGCCATGAGACTGAGGATGAGCACTTGCTGAACTTGCCGTCCACGCCTAAAGGCAAA 780 consensus_11972#1 ------------------------------------------------------------ consensus_11972#0 GAGATTTCGATGGGCGCTGTTCTTGGCAGGATAGATGAGATTCCTGTGAGCAACTGTGTG 840 consensus_11972#1 ---------GNGAATCCTNCACCTAA-GAAANGATTGGGGNTTTTGGGAANGGATNC--- 47 * ** * * * ** * * ** ** * consensus_11972#0 GGCCATATTGATGAATTTCCACCTGATGATTTCACTAGGCTTGCAGATGCGTTCCCAGTT 900 consensus_11972#1 GGNCANGNGGGCAAGNNGATTCACCGNGGTTC--ATGGGT-----GAANNGGNTCCAGT- 99 ** ** * * * * ** * ** ** * ***** consensus_11972#0 AGTGATTTTATCGGCATGGCAGATGTGCCACTGGGCGATGATTACATTGGCCTTGCAGAC 960 consensus_11972#1 AGGGATTNTN--GGCNGGGAGAGGGCA----TGGGGGGGAAANA---TGGCCTGGCANAA 150 ** **** * *** ** * **** * * * ****** *** * consensus_11972#0 ATCAGCCACCTGCCGCTGCCTATCAC--AGATCTGAAGTTCGACCTCAATGCAGAACTCA 1018 consensus_11972#1 NTTA-CCACCTGCCG-TGCCTNTTAACAANATTGGAAGTTGGACCTTCATGCGGAATTCA 208 * * ********** ***** * * * ** ****** ***** **** *** *** consensus_11972#0 ACTGGGACGGGTTCGACTTTGCTTCATTGG-AACAAGAACTCAACTGTCTTTGATGG-CT 1076 consensus_11972#1 A-TGGGNAGGGTTGGATTTGGTTTCATTGGGAACAGGAATTCAACTGTCTTGGATGGGCT 267 * **** ***** ** ** * ******** **** *** *********** ***** ** consensus_11972#0 TGAATCCTGTTCTATGTG-AAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTC 1135 consensus_11972#1 GGAATCCTGTTCTATGGGGAAAACTTCTTGTTGATGGAATGGAGTGCAGGAGGTAGATTC 327 *************** * ***** ********** **** ******************* consensus_11972#0 AGGTATCCATCTTTC--ACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCT 1193 consensus_11972#1 AGGTATCCATCTTTTCAACATTGCTGGCAGGCGGAGTGTATGATCTGGAGATTTTCATCT 387 ************** *************** *************************** consensus_11972#0 CCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATT 1253 consensus_11972#1 CCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATT 447 ************************************************************ consensus_11972#0 TATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTG 1313 consensus_11972#1 TATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTG 507 ************************************************************ consensus_11972#0 ATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTG 1373 consensus_11972#1 ATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTG 567 ************************************************************ consensus_11972#0 TTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATT 1433 consensus_11972#1 TTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATT 627 ************************************************************ consensus_11972#0 GTAAATACCCTTACTAATTTTAGGCAATGAACAGCTAAGAATAGTTCATTGTTGAACAAA 1493 consensus_11972#1 GTAAAT------------------------------------------------------ 633 ****** consensus_11972#0 AATGATTAATT 1504 consensus_11972#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||