These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11982#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1505 fasta sequence [GCATGCAAAAATGGACCTGGTGCAATTGACTGGTACAAAGGGCTACAACCTTTGATGACTCATGCCAAAACAAAGGGTTCTATAAAGGTCAAGCGTCACAGAGAATTGGCTAGTTTATTGGAAGAAGAGCTATCTCGCAGGGGAACTTCAGTGGTACCATCTGGCGAACAATTTAGGAAATGGAAAGGATTGCGGGAAAGCACTGATCGTGAGATTGTTTGGCCACCAATGGTGGTTGTTATGAACACTGTATTGGAACAAGATGAGGATGATAAGTGGAAAGGTATGGGGAACCAAGAGCTAATTGATTATTTCAGTGAATATGCTGCAAGCAAAGCACGCCATGCCTATGGTCCAAATGGGCACCGTGGCATGAGTGTGCTAATCTTTGACAGCTCGGCTGTGGGCTATATGGAAGCAGAACGTTTGCATGATCACTTTGTTCGTCAAAGAACAGACAGGAATACATGGAACAGTGCTCA-CAAGGTTACATTCTTACCTGGTGGGAAAAGGCAGCTGTATGGTTTCTTAGCTACAAAAGATGACATGGAGACATTCAATAGACATTGCCACGG-AAAATCCCGTTTGAAATATGAGATGAGATCTTATAATGAGATGGTGGTTACCCAAATGAAGCAGATGAGCGAAGACAACCAGCAACTGAATTACCTGAAGAACAAAATGGTTAAGAAAGAGCAGCACTCTAAATTAGTAGAGGATACATTGAGTGTTGTTACCCAGAAACTTAGGGAGACAATGGAAGAGAATACTATTGTACGAAATAAAGCCAAAGAAAAGCACTTGGAGTATGAGAAAGAGATGAAGTACCAGGAGGAATTTTTCCATGATCAAATCG-AAAAAATTCACAAGGCCACAGAGGAGAAAGAAATCAAGTTTGAGAAGTTGCTGCAAGAGGAGCGAGCAAAGGCTAGACAAAGTGATGTTGACTCTGGAAGTACTGAAGATCGCAGGCAAAGGAAGGAAAAGATTCAGAACTTCATAGACTGCCAGGTGAAGGATGTTGAGGAATTTGAAGCCGAACGAGACAAACTGATCAAATTGCATGAAGAGAAGAAGGTGAAGCTCAAGAAGGAGTACCTGGCGAAGGAATTTGAGCTTGAGAAGGAGCTGGACACAGCCCTCACTTCCCTGATGGATAAACACAAGCCGGACATCTTCAAATCCTCCACCTCGCCTTCGACATGAAGAACTGCGGCTTACCATACATTTCCTGCTCATCTACAATAGCTAAGACTCCCATTTCCTAAGTACCCGTAAAACTTCTAGCGATGCGAAAGCATCATTCTGTTTGGGTGGATGCATGCCTTTGGAAGGAAACCTGAACCAGTTCCGTATTATATGGAGTA-CT-ATCAGTTT-ATGGTTGCTGATGAACTGATGACT-G-TGCGCTGCGCTTTTACAGCAAGCGTGGAAATCGAATATATATCTAGTTTATCTCATCATTCTGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK064995 [GCATGCAAAAATGGACCTGGTGCAATTGACTGGTACAAAGGGCTACAACCTTTGATGACTCATGCCAAAACAAAGGGTTCTATAAAGGTCAAGCGTCACAGAGAATTGGCTAGTTTATTGGAAGAAGAGCTATCTCGCAGGGGAACTTCAGTGGTACCATCTGGCGAACAATTTAGGAAATGGAAAGGATTGCGGGAAAGCACTGATCGTGAGATTGTTTGGCCACCAATGGTGGTTGTTATGAACACTGTATTGGAACAAGATGAGGATGATAAGTGGAAAGGTATGGGGAACCAAGAGCTAATTGATTATTTCAGTGAATATGCTGCAAGCAAAGCACGCCATGCCTATGGTCCAAATGGGCACCGTGGCATGAGTGTGCTAATCTTTGACAGCTCGGCTGTGGGCTATATGGAAGCAGAACGTTTGCATGATCACTTTGTTCGTCAAAGAACAGACAGGAATACATGGAACAGTGCTCACCAAGGTTACATTCTTACCTGGTGGGAAAAGGCAGCTGTATGGTTTCTTAGCTACAAAAGATGACATGGAGACATTCAATAGACATTGCCACGG AAAATCCCGTTTGAAATATGAGATGAGATCTTATAATGAGATGGTGGTTACCCAAATGAAGCAGATGAGCGAAGACAACCAGCAACTGAATTACCTGAAGAACAAAATGGTTAAGAAAGAGCAGCACTCTAAATTAGTAGAGGATACATTGAGTGTTGTTACCCAGAAACTTAGGGAGACAATGGAAGAGAATACTATTGTACGAAATAAAGCCAAAGAAAAGCACTTGGAGTATGAGAAAGAGATGAAGTACCAGGAGGAATTTTTCCATGATCAAATCGAAAAAAATTCACAAGGCCACAGAGGAGAAAGAAATCAAGTTTGAGAAGTTGCTGCAAGAGGAGCGAGCAAAGGCTAGACAAAGTGATGTTGACTCTGGAAGTACTGAAGATCGCAGGCAAAGGAAGGAAAAGATTCAGAACTTCATAGACTGCCAGGTGAAGGATGTTGAGGAATTTGAAGCCGAACGAGACAAACTGATCAAATTGCATGAAGAGAAGAAGGTGAAGCTCAAGAAGGAGTACCTGGCGAAGGAATTTGAGCTTGAGAAGGAGCTGGACACAGCCCTCACTTCCCTGATGGATAAACACAAGCCGGACATCTTCAAATCCTCCACCTCGCCTTCGACATGAAGAACTGCGGCTTACCATACATTTCCTGCTCATCTACAATAGCTAAGACTCCCATTTCCTAAGTACCCGTAAAACTTCTAGCGATGCGAAAGCATCATTCTGTTTGGGTGGATGCATGCCTTTGGAAGGAAACCTGAACCAGTTCCGTATTATATGGAGTA CT ATCAGTTT ATGGTTGCTGATGAACTGATGACT G TGCGCTGCGCTTTTACAGCAAGCGTGGAAATCGAATATATATCTAGTTTATCTCATCATTCTGCTCT ] [+] EMBL AK064217 [GCATGCAAAAATGGACCTGGTGCAATTGACTGGTACAAAGGGCTACAACCTTTGATGACTCATGCCAAAACAAAGGGTTCTATAAAGGTCAAGCGTCACAGAGAATTGGCTAGTTTATTGGAAGAAGAGCTATCTCGCAGGGGAACTTCAGTGGTACCATCTGGCGGACAATTTAGGAAATGGAAAGGATTGCGGGAAAGCACTGATCGTGAGATTGTTTGGCCACCAATGGTGGTTGTTATGAACACTGTATTGGAACAAGATGAGGATGATAAGTGGAAAGGTATGGGGAACCAAGAGCTAATTGATTATTTCAGTGAATATGCTGCAAGCAAAGCACGCCATGCCTATGGTCCAAATGGGCACCGTGGCATGAGTGTGCTAATCTTTGACAGCTCGGCTGTGGGCTATATGGAAGCAGAACGTTTGCATGATCACTTTGTTCGTCAAAGAACAGACAGGAATACATGGAACAGTGCTCA CAAGGTTACATTCTTACCCGGTGGGAAAAGGCAGCTGTATGGTTTCTTAGCTACAAAAGATGACATGGAGACATTCAATAGACATTGCCACGG AAAATCCCGTTTGAAATATGAGATGAGATCTTATAATGAGATGGTGGTTACCCAAATGAAGCAGATGAGCGAAGACAACCAGCAACTGAATTACCTGAAGAACAAAATGGTTAAGAAAGAGCAGCACTCTAAATTAGTAGAGGATACATTGAGTGTTGTTACCCAGAAACTTAGGGAGACAATGGAAGAGAATACTATTGTACGAAATAAAGCCAAAGAAAAGCACTTGGAGTATGAGAAAGAGATGAAGTACCAGGAGGAATTTTTCCAT ] [+] EMBL CA998756 [GCATGCATAAATGGACCTGGTGCAATTGACTGGTACAAAGGGCTACAACCTTTGATGACTCATGCCAAAACAAAGGGTTCTATAAAGGTCAAGCGTCACAGAGAATTGGCTAGTTTATTGGAAGAAGAGCTATCTCGCAGGGGAACTTCAGTGGTACCATCTGGCGAACAATTTAGGAAATGGAAAGGATTGCGGGAAAGCACTGATCGTGAGATTGTTTGGCCACCAATGGTGGTTGTTATGAACACTGTATTGGAACAAGATGAGGATGATAAGTGGAAAGGTATGGGGAACCAAGAGCTAATTGATTATTTCAGTGAATATGCTGCAAGCAAAGCACGCCATGCCTATGGTCCCAATGGGCACCGTGGCATGAGTGTGCTAATCTTTGACAGCTCGGCTGTGGGCTATATGGAAGCAGAACGTTTGCATGATCACTTTGTTCGTCAAAGAACAGACA ] [+] EMBL AK061975 [ GGAACAAGATGAGGATGATAAGTGGAAAGGTATGGGGAACCAAGAGCTAATTGATTATTTCAGTGAATATGCTGCAAGCAAAGCACGCCATGCCTATGGTCCAAATGGGCACCGTGGCATGAGTGTGCTAATCTTTGACAGCTCGGCTGTGGGCTATATGGAAGCAGAACGTTTGCATGATCACTTTGTTCGTCAAAGAACAGACAGGAATACATGGAACAGTGCTCA CAAGGTTACATTCTTACCTGGTGGGAAAAGGCAGCTGTATGGTTTCTTAGCTACAAAAGATGACATGGAGACATTCAATAGACATTGCCACGG AAAATCCCGTTTGAAATATGAGATGAGATCTTATAATGAGATGGTGGTTACCCAAATGAAGCAGATGAGCGAAGACAACCAGCAACTGAATTACCTGAAGAACAAAATGGTTAAGAAAGAGCAGCACTCTAAATTAGTAGAGGATACATTGAGTGTTGTTACCCAGAAACTTAGGGAGACAATGGAAGAGAATACTATTGTACGAAATAAAGCCAAAGAAAAGCACTTGGAGTATGAGAAAGAGATGAAGTACCAGGAGGAATTTTTCCATGATCAAATCG AAAAAATTCACAAGGCCACAGAGGAGAAAGAAATCAAGTTTGAGAAGTTGCTGCAAGAGGAGCGAGCAAAGGCTAGACAAAGTGATGTTGACTCTGGAAGTACTGAAGATCGCAGGCAAAGGAAGGAAAAGATTCAGAACTTCATAGACTGCCAGGTGAAGGATGTTGAGGAATTTGAAGCCGAACGAGACAAACTGATCAAATTGCATGAAGAGAAGAAGGTGAAGCTCAAGAAGGAGTACCTGGCGAAGGAATTTGAGCTTGAGAAGGAGCTGGACACAGCCCTCACTTCCCTGATGGATAAACACAAGCCGGACATCTTCAAATCCTCCACCTCGCCTTCGACATGAAGAACTGCGGCTTACCATACATTTCCTGCTCATCTACAATAGCTAAGACTCCCATTTCCTAAGTACCCGTAAAACTTCTAGCGATGCGAAAGCATCATTCTGTTTGGGTGGATGCATGCCTTTGGAAGGAAACCTGAACCAGTTCCGTATTATATGGAGTA CT ATCAGTTT ATGGTTGCTGATGAACTGATGACT G TGCGCTGCGCTTTTACAGCAAGCGTGGAAATCGAATATATATCTAGT ] [+] EMBL AA751662 [ GGGAACCAAGAGCTAATTGATTATTTCAGTGAATATGCTGCAAGCAAAGCACGCCATGCCTATGGTCCAAATGGGCACCGTGGCATGAGTGTGCTAATCTTTGACAGCTCGGCTGTGGGCTATATGGAAGCAGAACGTTTGCATGATCACTTTGTTCGTCAAAGAACAGACAGGAATACATGGAACAGTGCTCA CAAGGTTACATTCTTACCTGGTGGGAAAAGGCAGCTGTATGGTTTCTTAGCTACAAAAGATGACATGGAGACATTCNNTANACATTGCCACGGAAAAATCCCGTTTGAAATATGAGATGAGATCTTATAATGAGATGGTGGTTACCCAAATGAAGCAGATGAGCGAAGACAACCA ] [+] EMBL AA750278 [ AAAGAGATGAAGTACCAGGAGGAATTTTTCCATGATCAAATCG AAACAATTCACACGGCCACAGAGGAGAAAGAAATCAAGTTTGAGAAGTTGCTGCAAGAGGAGC AGCAAAGGCTAGACAAAGTGATGTTGACTCTGG AGTACTGAAGATCGCAGGCAAAGGAAGGAAAAGATTCAGAACTTCATAGACTGCCA GTGAAGGATG ] [+] EMBL AU083445 [ CAAAGTGATGTTGACTCTGGAAGTACTGAAGATCGCAGGCAAAGGAAGGNAAAGATTCAGAACTTCATAGACTGCCAGGTGAAGGATGTTGAGGAATTTGAAGCCGAACGAGACAAACTGATCAAATTGCATGAAGAGAAGAAGGTGAAGCTCAAGAAGGAGTACCTGGCGAAGGAATTTGAGCTTGAGAAGGAGCTGGACACAGCCCTCACTTCCCTGATGGATAAACACAAGCCGGACATCTTCAAATCCTCCACCTCGCCTTCGACATGAAGAACTGCGGCTTACCATACATTTCCTGCTCATCTACAATAGCTAAGACTCCCATTTCCTAAGTACCCGTAAAACTTCTAGCGATGCGAAAGCATCATTCTGTTTGGGTGGATGCATGCCTTTGGAAGGAAACCTGAACCAGTTCCGTATTATATGGAGTA CT ATCAGTTT ATGGTTGCTGATGAACTGATGACT GNTTCG TGCGCTTTTACAGCAAGCGTGGAAATCGAATATATATCTAGTTTATCTCATCAaaaa ] [+] EMBL BI806331 [ AAACCCAAGCCGGACATCTTC AATCCTCCACCTCGCCTTCGACATGAAGAACTGCGGCTTACCATACATTTCCTGCTCATCTAC ATAGCTAAGACTCCCATTTCCTAAGTACCCGTAAAACTTCTAGCGATGCGAAAGCATCATTCTGTTTGGGTGGAT CAT CCTTTGGAAGGAAACCTGAACC GTTCCGTATTATATGGAGTACCTAATCGTTTTAATGGTTGCTGATGAACTGATGACT G TGC CTGCGCTTTTATACCAg ] [+] EMBL AU067958 [ ACCNCGCCTTCGACATGAAGAACTGCGGCTTNCCATACATTTCCTGCTCATCTNCAATAGCTAAGACTCCCATTTCCTAAGTNCCCGTAAAACTTCTAGCGATGCGAAAGCATCATTCTGTTTGGGTGGATGCATGCCTTTGGAAGGAAACCTGAACCAGTTCCGTATTATATGGAGTA CT ATCAGTTT ATGGTTGCTGATGAACTGATGACTNN TTNG TGCGCTTTTACNGCAAGCGTGGAAATCGAATATATATCTAGTTTATCTCATCATTCTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||