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Oryza sativa
cluster # 12018 cluster # 12018       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12018#0 length = 1841 sequences # 8  
consensus_12018#1 length = 769 sequences # 2  

consensusID : consensus_12018#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1841
fasta sequence
                              [TTTTTTCTTTCTTCCCAGACTTTTTCTCCAAGTTCAACTCCGCCTCCTCCCTCCTCCCTCCCCCCGATCTCGGGAGCCATGTCGTGGCGGTGGGCTCTCGCGCGGCGCGTCGCCGCGCTGGGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGCAGCGGCTCTTCTCCTCGGCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGCCGCACTACCAGATTCGGAGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGCGATGGTTACATGATGCTCAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAACAGCAGGATCCATTTGAGTTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGATCCATGGTAGCTGCTGAGGTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGGGAGCTGAGGGTAAAAGATTCAGACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAATTCCCCTTATCAGATTCAACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCACGAGACAGCAAAATATTGCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATGATGATGTACTGGATGATGCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGGGGAACAAGCTTTCTGTTCTGGCTGGTGACTTCCTCCTGTCTAGAGCATGTGTGGCACTTGCAGCGCTTGGGAACACAGAGGTGGTATCTCTAATGGCTACTGCTGTAGAACATCTAGTTACTGGTGAAACCATGCAAATCTCCACAAGTAGAGAGCAAAGGCGAAGTATGGATTACTACTTGCAGAAGACGTACTACAAAACAGCATCATTGATATCAAATAGCTGCAAGGCTGTCGCTATTCTTGCAGGGCACACTGCTGATGTGTCAATGCTCGCATATGAATATGGTCGAAACCTGGGTTTAGCCTTCCAGTTGATCGACGATGTTCTTGATTTCACAGGCACTTCTGCATCCCTTGGGAAGGGTTCATTAACTGATATCCGTCATGGAATCATTACCGCACCTATGCTTTATGCGATGGAAGAATTCCCACAACTACATGAAGTTGTTGACAGGGGTTTTGACAATCCTGCAAATGTTGAGCTTGCTCTTGACTACCTACAGAAGAGCCGCGGGATTGAAAAGACGAAAGAGCTTGCAAGAGAACATGCTAACCGTGCAATCAAAGCCATAGAAGCTCTCCCAGACAGCGATGATGAAGATGTTCTGACATCAAGGCGTGCTCTTATTGACATCACAGAGAGAGTCATCACTAGAACAAAATAGCAACTGTTAGCATTCACAAGGTGGAGAACTGGAGATAAGGCTGATTTTCGCCACAGGCGTGGTGTTCCACATGGAAATTTTTGTACACTTTGGTCATTGCATTCTTTTTCATTGTCCAAGTTTTGTGTAGCGTGGATCAAAATTAGGATCTGAATCTATGGATCGGTATTCCTCAGGATCACCCCCACTCTGCAGCTCTAGTGTTCTTAGTT-ACGGGTTGCAGCAAAATCTGTGCATTAGTATTACTGATTGCAATTATCACCAGACTGTAGCACTGTAGCCATATAAGTGGAAGCTTGAAACATAATATACGAGGAAAATGGATCGGCTCTCCTATCATGAGAGCACGATTTCGATATGTTTCCCCACACTTCTCTTGTTGCTTCTGAAGAGAAATCTTGTATGCTTAACTTTGATTGTTTTCAATCTTCCAAGATTAGGCGCATTACAAAATATATTGATGTGACCCA]

[+] EMBL AK071299             [TTTTTTCTTTCTTCCCAGACTTTTTCTCCAAGTTCAACTCCGCCTCCTCCCTCCTCCCTCCCCCCGATCTCGGGAGCCATGTCGTGGCGGTGGGCTCTCGCGCGGCGCGTCGCCGCGCTGGGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGCAGCGGCTCTTCTCCTCGGCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGCCGCACTACCAGATTCGGAGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGCGATGGTTACATGATGCTCAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAACAGCAGGATCCATTTGAGTTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGATCCATGGTAGCTGCTGAGGTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGGGAGCTGAGGGTAAAAGATTCAGACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAATTCCCCTTATCAGATTCAACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCACGAGACAGCAAAATATTGCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATGATGATGTACTGGATGATGCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGGGGAACAAGCTTTCTGTTCTGGCTGGTGACTTCCTCCTGTCTAGAGCATGTGTGGCACTTGCAGCGCTTGGGAACACAGAGGTGGTATCTCTAATGGCTACTGCTGTAGAACATCTAGTTACTGGTGAAACCATGCAAATCTCCACAAGTAGAGAGCAAAGGCGAAGTATGGATTACTACTTGCAGAAGACGTACTACAAAACAGCATCATTGATATCAAATAGCTGCAAGGCTGTCGCTATTCTTGCAGGGCACACTGCTGATGTGTCAATGCTCGCATATGAATATGGTCGAAACCTGAGTTTAGCCTTCCAGTTGATCGACGATGTTCTTGATTTCACAGGCACTTCTGCATCCCTTGGGAAGGGTTCATTAACTGATATCCGTCATGGAATCATTACCGCACCTATGCTTTATGCGATGGAAGAATTCCCACAACTACATGAAGTTGTTGACAGGGGTTTTGACAATCCTGCAAATGTTGAGCTTGCTCTTGACTACCTACAGAAGAGCCGCGGGATTGAAAAGACGAAAGAGCTTGCAAGAGAACATGCTAACCGTGCAATCAAAGCCATAGAAGCTCTCCCAGACAGCGATGATGAAGATGTTCTGACATCAAGGCGTGCTCTTATTGACATCACAGAGAGAGTCATCACTAGAACAAAATAGCAACTGTTAGCATTCACAAGGTGGAGAACTGGAGATAAGGCTGATTTTCGCCACAGGCGTGGTGTTCCACATGGAAATTTTTGTACACTTTGGTCATTGCATTCTTTTTCATTGTCCAAGTTTTGTGTAGCGTGGATCAAAATTAGGATCTGAATCTATGGATCGGTATTCCTCAGGATCACCCCCACTCTGCAGCTCTAGTGTTCTTAGTT ACGGGTTGCAGCAAAATCTGTGCATTAGTATTACTGATTGCAATTATCACCAGACTGTAGCACTGTAGCCATATAAGTGGAAGCTTGAAACATAATATACGAGGAAAATGGATCGGCTCTCCTATCATGAGAGCACGATTTCGATATGTTTCCCTACACTTCTCTTGTTGCTTCTGAAGAGAAATCTTGTATGCTTAACTTTGATTGTTTTCAATCTTCCAAGATTAGGCGCATTACAAAATATATTGATGTGACCCA]
[+] EMBL AK059456             [                      TTTCTCCAAGTTCAACTCCGCCTCCTCCCTCCTCCCTCCCCCCGATCTCGGGAGCCATGTCGTGGCGGTGGGCTCTCGCGCGGCGCGTCGCCGCGCTGGGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGCAGCGGCTCTTCTCCTCGGCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGCCGCACTACCAGATTCGGAGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGCGATGGTTACATGATGCTCAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAACAGCAGGATCCATTTGAGTTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGATCCATGGTAGCTGCTGAGGTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGGGAGCTGAGGGTAAAAGATTCAGACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAATTCCCCTTATCAGATTCAACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCACGAGACAGCAAAATATTGCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATGATGATGTACTGGATGATGCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGGGGAACAAGCTTTCTGTTCTGGCTGGTGACTTCCTCCTGTCTAGAGCATGTGTGGCACTTGCAGCGCTTGGGAACACAGAGGTGGTATCTCTAATGGCTACTGCTGTAGAACATCTAGTTACTGGTGAAACCATGCAAATCTCCACAAGTAGAGAGCAAAGGCGAAGTATGGATTACTACTTGCAGAAGACGTACTACAAAACAGCATCATTGATATCAAATAGCTGCAAGGCTGTCGCTATTCTTGCAGGGCACACTGCTGATGTGTCAATGCTCGCATATGAATATGGTCGAAACCTGGGTTTAGCCTTCCAGTTGATCGACGATGTTCTTGATTTCACAGGCACTTCTGCATCCCTTGGGAAGGGTTCATTAACTGATATCCGTCATGGAATCATTACCGCACCTATGCTTTATGCGATGGAAGAATTCCCACAACTACATGAAGTTGTTGACAGGGGTTTTGACAATCCTGCAAATGTTGAGCTTGCTCTTGACTACCTACAGAAGAGCCGCGGGATTGAAAAGACGAAAGAGCTTGCAAGAGAACATGCTAACCGTGCAATCAAAGCCATAGAAGCTCTCCCAGACAGCGATGATGAAGATGTTCTGACATCAAGGCGTGCTCTTATTGACATCACAGAGAGAGTCATCACTAGAACAAAATAGCAACTGTTAGCATTCACAAGGTGGAGAACTGGAGATAAGGCTGATTTTCGCCACAGGCGTGGTGTTCCACATGGAAATTTTTGTACACTTTGGTCATTGCATTCTTTTTCATTGTCCAAGTTTTGTGTAGCGTGGATCAAAATTAGGATCTGAATCTATGGATCGGTATTCCTCAGGATCACCCCCACTCTGCAGCTCTAGTGTTCTTAGTT ACGGGTTGCAGCAAAATCTGTG                                                                                                                                                                                                                                            ]
[+] EMBL CB677274             [                                                                        GGAGCCTTGTCGTGGCGGTGGGCTCTCGCGCGGCGCGTCGCCGCGCTGGGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGCAGCGGCTCTTCTCCTCGGCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGCCGCACTACCAGATTCGGAGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGCGATGGTTACATGATGCTCAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAACAGCAGGATCCATTTGAGTTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGATCCATGGTAGCTGCTGAGGTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGGGAGCTGAGGGTAAAAGATTCACACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAATTCCCCTTATCAGATTCAACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCACGAGACAGCAAAATATTGCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATGATGATGTACTGGATGATGCTGACACTACGCGTGGCGTCAGTTCGGTGAATTGCATTATGGGGAACAAGCTTTCTGTTCTGGCTGGTGACTTCCTCCTGTCTAGAGCATGTGTGGCACTTGCAGCGCTTGGGAACACAGAGGTGGTATCTCTAATGGCTACTGCTGTAGAACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA305649             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACAGCATCATTGATATCAAATAGCTGCAAGGCTGTCGCTATTCTTGCAGGGCACACTGCTGATGTGTCAATGCTCGCATATGAATATGGTCGAAACCTGGGTTTAGCCTTCCAGTTGATCGACGATGTTCTTGATTTCACAGGCACTTCTGCATCCCTTGGGAAGGGTTCATTAACTGATATCCGTCATGGAATCATTACCGCACCTATGCTTTATGCGATGGAAGAATTCCCACAACTACATGAAGTTGTTGACAGGGGTTTTGACAATCCTGCAAATGTTGAGCTTGCTCTTGACTACCTACAGAAGAGCCGCGGGATTGAAAAGACGAAAGAGCTTGCAAGAGAACATGCTAACCGTGCAATCAAAGCCATAGAAGCTCTCCCAGACAGCGATGATGAAGATGTTCTGACATCAAGGCGTGCTCTTATTGACATCACAGAGAGAGTCATCACTAGAACAAAATAGCAACTGTTAGCATTCACAAGGTGGAGAACTGGAGATAAGGCTGATTTTCGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB679297             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GATATCAAATAGCTGCAAGGCTGTCGCTATTCTTGCAGGGCACACTGCTGATGTGTCAATGCTCGCATATGAATATGGTCGAAACCTGGGTTTAGCCTTCCAGTTGATCGACGATGTTCTTGATTTCACAGGCACTTCTGCATCCCTTGGGAAGGGTTCATTAACTGATATCCGTCATGGAATCATTACCGCACCTATGCTTTATGCGATGGAAGAATTCCCACAACTACATGAAGTTGTTGACAGGGGTTTTGACAATCCTGCAAATGTTGAGCTTGCTCTTGACTACCTACAGAAGAGCCGCGGGATTGAAAAGACGAAAGAGCTTGCAAGAGAACATGCTAACCGTGCAATCAAAGCCATAGAAGCTCTCCCAGACAGCGATGATGAAGATGTTCTGACATCAAGGCGTGCTCTTATTGACATCACAGAGAGAGTCATCACTAGAACAAAATAGCAACTGTTAGCATTCACAAGGTGGAGAACTGGAGATAAGGCTGATTTTCGCCACAGGCGTGGTGTTCCACATGGAAATTTTTGTACACTTTGGTCATTGCATTCTTTTTCATTGTCCAAGTTTTGTGTAGCGTGGATCAAAATTAGGATCTGAATCTATGGATCGGTATTCCTCAGGATCACCCCCACTCTGCAGCTCTAGTGTTCTTAGTT ACGGGTTGCAGCAAAATCTGTGCATTAGTATTACTGATTGCAATTATCACCAGACTGTAGCACTGTAGCCATATAAGTGGAAGCTTGAAACATAATATACGAGGAAAATGGATCGGCTCTCCTATCATGAGAGCACGATTTCGATATG                                                                                                              ]
[-] EMBL CB677275             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AACTGATATCCGTCATGGAATCATTCCCGCACCTATGCTTTATGCGATGGAAGAATTCCCACAACTACATGAAGTTGTTGACAGGGGTTTTGACAATCCTGCAAATGTTGAGCTTGCTCTTGACTACCTACAGAAGAGCCGCGGGATTGAAAAGACGAAAGAGCTTGCAAGAGAACATGCTAACCGTGCAATCAAAGCCATAGAAGCTCTCCCAGACAGTGATGATGAAGATGTTTTGACATCAAGGCGTGCTCTTATTGACATCACAGAGAGAGTCATCTCTAGAACAAAATAGCAACTGTTAGCATTCCCAAGGTGGAGAACTGGAGATAAGCCTGATTTTCGCCCCAGGCGTGGTGTTCCACATGGAAATTTTTGTACACTTTGGTCATTGCATTCTTTTTCATCGTCCAAGTTTTGTGTAGCGGGGATCAAAATTAGGATCTGAATCTATGGATCGGTATTCCTCAGGATCACCCCCACTCTGCAGCTCTAGTGTTCTTAGTTCCCGGGTTGCAGCAAAATCTGTGCATTAGTATTACTGATTGCAATTATCACCAGACTGTAGCCCTGTACCCATATAAGTGGAAGCTTGAAACATAATATGCGAGGAAAATGGATCGGCTTTCCTATCATGAGAGCACGATTTCGATATGTTTCCCCACCCTTCTCTaaagggt                                                                                      ]
[+] EMBL BQ908533             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTTGTTGACAGGGGTTTTGACAATCCTGCAAATGTTGAGCTTGCTCTTGACTACCTACAGAAGAGCCGCGGGATTGAAAAGACGAAAGAGCTTGCAAGAGAACATGCTAACCGTGCAATCAAAGCCATAGAAGCTCTCCCAGACAGCGATGATGAAGATGTTCTGACATCAAGGCGTGCTCTTATTGACATCACAGAGAGAGTCATCACTAGAACAAAATAGCAACTGTTAGCATTCACAAGGTGGAGAACTGGAGATAAGGCTGATTTTCGCCACAGGCGTGGTGTTCCACATGGAAATTTTTGTACACTTTGGTCATTGCATTCTTTTTCATTGTCCAAGTTTTGTGTAGCGTGGATCAAAATTAGGATCTGAATCTATGGATCGGTATTCCTCAGGATCACCCCCACTCTGCAGCTCTAGTGTTCTTAGTT ACGGGTTGCAGCAAAATCTGTGCATTAGTATTACTGATTGCAATGATCACCAGACTGTAGCACTGTAGCCATATAAGTGGAAGCTTGAAACATAATATACGAGGAAAATGGATCGGCTCTCCTATCATGAGAGCACGATTTCGATATGTTTCCaaaaa                                                                                                    ]
[+] EMBL CA755221             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAGCCATAGAAGCTCTCCCAGACAGCGATGATGAAGATGTTCTGACATCAAGGCGTGCTCTTATTGACATCACAGAGAGAGTCATCACTAGAACAAAATAGCAACTGTTAGCATTCACAAGGTGGAGAACTGGAGATAAGGCTGATTTTCGCCACAGGCGTGGTGTTCCACATGGAAATTTTTGTACACTTTGGTCATTGCATTCTTTTTCATTGTCCAAGTTTTGTGTAGCGTGGATCAAAATTAGGATCTGAATCTATGGATCGGTATTCCTCAGGATCACCCCCACTCTGCAGCTCTAGTGTTCTTAGTT ACGGGTTGCAGCAAAATCTGTGCATTAGTATTACTGATTGCAATTATCACCAGACTGTAGCACTGTAGCCATATNAGTGGAAGCTTGAAACATAATATACGAGGAAAATGGATCGGCTCTCCTATCATGAGAGCACGATTTCGATAaaaaaaa                                                                                                         ]


>consensus_12018#0 TTTTTTCTTTCTTCCCAGACTTTTTCTCCAAGTTCAACTCCGCCTCCTCCCTCCTCCCTC CCCCCGATCTCGGGAGCCATGTCGTGGCGGTGGGCTCTCGCGCGGCGCGTCGCCGCGCTG GGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGCAGCGGCTCTTCTCCTCG GCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGCCGCACTACCAGATTCGG AGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGCGATGGTTACATGATGCT CAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAACAGCAGGATCCATTTGAG TTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGATCCATGGTAGCTGCTGAG GTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGGGAGCTGAGGGTAAAAGA TTCAGACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAATTCCCCTTATCAGATTCA ACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCACGAGACAGCAAAATATT GCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATGATGATGTACTGGATGAT GCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGGGGAACAAGCTTTCTGTT CTGGCTGGTGACTTCCTCCTGTCTAGAGCATGTGTGGCACTTGCAGCGCTTGGGAACACA GAGGTGGTATCTCTAATGGCTACTGCTGTAGAACATCTAGTTACTGGTGAAACCATGCAA ATCTCCACAAGTAGAGAGCAAAGGCGAAGTATGGATTACTACTTGCAGAAGACGTACTAC AAAACAGCATCATTGATATCAAATAGCTGCAAGGCTGTCGCTATTCTTGCAGGGCACACT GCTGATGTGTCAATGCTCGCATATGAATATGGTCGAAACCTGGGTTTAGCCTTCCAGTTG ATCGACGATGTTCTTGATTTCACAGGCACTTCTGCATCCCTTGGGAAGGGTTCATTAACT GATATCCGTCATGGAATCATTACCGCACCTATGCTTTATGCGATGGAAGAATTCCCACAA CTACATGAAGTTGTTGACAGGGGTTTTGACAATCCTGCAAATGTTGAGCTTGCTCTTGAC TACCTACAGAAGAGCCGCGGGATTGAAAAGACGAAAGAGCTTGCAAGAGAACATGCTAAC CGTGCAATCAAAGCCATAGAAGCTCTCCCAGACAGCGATGATGAAGATGTTCTGACATCA AGGCGTGCTCTTATTGACATCACAGAGAGAGTCATCACTAGAACAAAATAGCAACTGTTA GCATTCACAAGGTGGAGAACTGGAGATAAGGCTGATTTTCGCCACAGGCGTGGTGTTCCA CATGGAAATTTTTGTACACTTTGGTCATTGCATTCTTTTTCATTGTCCAAGTTTTGTGTA GCGTGGATCAAAATTAGGATCTGAATCTATGGATCGGTATTCCTCAGGATCACCCCCACT CTGCAGCTCTAGTGTTCTTAGTTACGGGTTGCAGCAAAATCTGTGCATTAGTATTACTGA TTGCAATTATCACCAGACTGTAGCACTGTAGCCATATAAGTGGAAGCTTGAAACATAATA TACGAGGAAAATGGATCGGCTCTCCTATCATGAGAGCACGATTTCGATATGTTTCCCCAC ACTTCTCTTGTTGCTTCTGAAGAGAAATCTTGTATGCTTAACTTTGATTGTTTTCAATCT TCCAAGATTAGGCGCATTACAAAATATATTGATGTGACCCA



consensusID : consensus_12018#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 769
fasta sequence
                              [CTCCTCTCTCCTCCCTCCCCCCGATCTCGGGAGCCATGTCGTGGCGGTGGGCTCTCGCGCGGCGCGTCGCCGCGCTGGGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGCAGCGGCTCTTCTCCTCGGCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGCCGCACTACCAGATTCGGAGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGCGATGGTTACATGATGCTCAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAACAGCAGGATCCATTTGAGTTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGATCCATGGTAGCTGCTGAGGTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGGGAGCTGAGGGTAAAAGATTCAGACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAATTCCCCTTATCAGATTCAACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCACGAGACAGCAAAATATTGCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATGATGATGTACTGGATGATGCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGGGGAACAAGGTATTGTAAGTCACACGAACTGCATACGCAGTGTACTAAGTGAGTATTAGATACTCTCATCAAGAACACACACATCACCTTATACACACACAAAAGGATAG]

[+] EMBL CB679296             [CTCCTCTCTCCTCCCTCCCCCCGATCTCGGGAGCCATGTCGTGGCGGTGGGCTCTCGCGCGGCGCGTCGCCGCGCTGGGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGCAGCGGCTCTTCTCCTCGGCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGCCGCACTACCAGATTCGGAGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGCGATGGTTACATGATGCTCAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAACAGCAGGATCCATTTGAGTTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGATCCATGGTAGCTGCTGAGGTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGGGAGCTGAGGGTAAAAGATTCAGACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAATTCCCCTTATCAGATTCAACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCACGAGACAGCAAAATATTGCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATGATGATGTACTGGATGATGCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGGGGAACAAGGTATTGTAAGTCACACGAACTGCATACGCAGTGTACTAAGTGAGTATTAGATACTCTCATCAAGAACACACACATCACCTTATACACACACAAAAGGATAG]
[+] EMBL CB682812             [CTCCCCCCTCCTCCCTCCCCCCGATCTCGGGAGCCATGTCGTGGCGGTGGGCTCTCGCGCGGCGCGTCGCCGCGCTGGGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGCAGCGGCTCTTCTCCTCGGCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGCCGCACTACCAGATTCGGAGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGCGATGGTTACATGATGCTCAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAACAGCAGGATCCATTTGAGTTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGATCCATGGTAGCTGCTGAGGTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGGGAGCTGAGGGTAAAAGATTCAGACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAATTCCCCTTATCAGATTCAACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCACGAGACAGCAAAATATTGCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATGATGATGTACTGGATGATGCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGGGGAACAAGGTATTGTAAGTCACACGAACTGCATACGCAGTGTACTAAGTGAGTATTAGATACTC                                             ]


>consensus_12018#1 CTCCTCTCTCCTCCCTCCCCCCGATCTCGGGAGCCATGTCGTGGCGGTGGGCTCTCGCGC GGCGCGTCGCCGCGCTGGGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGC AGCGGCTCTTCTCCTCGGCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGC CGCACTACCAGATTCGGAGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGC GATGGTTACATGATGCTCAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAAC AGCAGGATCCATTTGAGTTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGAT CCATGGTAGCTGCTGAGGTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGG GAGCTGAGGGTAAAAGATTCAGACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAAT TCCCCTTATCAGATTCAACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCA CGAGACAGCAAAATATTGCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATG ATGATGTACTGGATGATGCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGG GGAACAAGGTATTGTAAGTCACACGAACTGCATACGCAGTGTACTAAGTGAGTATTAGAT ACTCTCATCAAGAACACACACATCACCTTATACACACACAAAAGGATAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12018#0      TTTTTTCTTTCTTCCCAGACTTTTTCTCCAAGTTCAACTCCGCCTCCTCCCTCCTCCCTC 60
consensus_12018#1      -------------------------------------------CTCCTCTCTCCTCCCTC 17
                                                                  ****** **********

consensus_12018#0      CCCCCGATCTCGGGAGCCATGTCGTGGCGGTGGGCTCTCGCGCGGCGCGTCGCCGCGCTG 120
consensus_12018#1      CCCCCGATCTCGGGAGCCATGTCGTGGCGGTGGGCTCTCGCGCGGCGCGTCGCCGCGCTG 77
                       ************************************************************

consensus_12018#0      GGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGCAGCGGCTCTTCTCCTCG 180
consensus_12018#1      GGCGCGACGAGCGGCGGTGGGGACGGCGCCACCGCCCAGGCGCAGCGGCTCTTCTCCTCG 137
                       ************************************************************

consensus_12018#0      GCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGCCGCACTACCAGATTCGG 240
consensus_12018#1      GCGGCTGCCCTCCTCGGGAGGCACCCTCCACCGCCGTCGCCGCCGCACTACCAGATTCGG 197
                       ************************************************************

consensus_12018#0      AGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGCGATGGTTACATGATGCT 300
consensus_12018#1      AGCAAGGTGGTGGGTTGCAGAGGAGCTACTTTCGTGAGCTCGCGATGGTTACATGATGCT 257
                       ************************************************************

consensus_12018#0      CAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAACAGCAGGATCCATTTGAG 360
consensus_12018#1      CAGTACCAGGTTCGCCAGGATGGGTTATCAAGGTCTGAGGAACAGCAGGATCCATTTGAG 317
                       ************************************************************

consensus_12018#0      TTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGATCCATGGTAGCTGCTGAG 420
consensus_12018#1      TTGGTTGCTGATGAGTTGTCACTTCTTGCAAATAGGCTACGATCCATGGTAGCTGCTGAG 377
                       ************************************************************

consensus_12018#0      GTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGGGAGCTGAGGGTAAAAGA 480
consensus_12018#1      GTCCCCAAACTGGCATCAGCTGCTGAGTATTTTTTTAAGGTGGGAGCTGAGGGTAAAAGA 437
                       ************************************************************

consensus_12018#0      TTCAGACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAATTCCCCTTATCAGATTCA 540
consensus_12018#1      TTCAGACCCACGGTATTATTGTTGATGGCATCAGCTCTGAAATTCCCCTTATCAGATTCA 497
                       ************************************************************

consensus_12018#0      ACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCACGAGACAGCAAAATATT 600
consensus_12018#1      ACAGAAGTGGGAGTTTTAACTATACTGGCAAATAAGCTCCGCACGAGACAGCAAAATATT 557
                       ************************************************************

consensus_12018#0      GCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATGATGATGTACTGGATGAT 660
consensus_12018#1      GCCGAGATAACTGAAATGATTCATGTTGCAAGCCTTCTACATGATGATGTACTGGATGAT 617
                       ************************************************************

consensus_12018#0      GCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGGGGAACAAGCT-TTCTGT 719
consensus_12018#1      GCTGACACTAGGCGTGGCGTCAGTTCGTTGAATTGCATTATGGGGAACAAGGTATTGTAA 677
                       *************************************************** * ** *  

consensus_12018#0      TCTGGCTGGTGACTTCCTCCTGTCTAGAGCATGTGTGGCACTTGCAGCGCTTGGGAACAC 779
consensus_12018#1      GTCACACGAACTGCATACGCAGTGTACTAAGTGAGTATTAGATACTCTCATCAAGAACAC 737
                              *           * ** **     ** **   *  * *     *   ******

consensus_12018#0      AGAGGTGGTATCTCTAATGGCTACTGCTGTAGAACATCTAGTTACTGGTGAAACCATGCA 839
consensus_12018#1      ACACAT--CACCTTATACACACACAAAAGGATAG-------------------------- 769
                       * *  *   * **   *     **    * * *                           

consensus_12018#0      AATCTCCACAAGTAGAGAGCAAAGGCGAAGTATGGATTACTACTTGCAGAAGACGTACTA 899
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      CAAAACAGCATCATTGATATCAAATAGCTGCAAGGCTGTCGCTATTCTTGCAGGGCACAC 959
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      TGCTGATGTGTCAATGCTCGCATATGAATATGGTCGAAACCTGGGTTTAGCCTTCCAGTT 1019
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      GATCGACGATGTTCTTGATTTCACAGGCACTTCTGCATCCCTTGGGAAGGGTTCATTAAC 1079
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      TGATATCCGTCATGGAATCATTACCGCACCTATGCTTTATGCGATGGAAGAATTCCCACA 1139
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      ACTACATGAAGTTGTTGACAGGGGTTTTGACAATCCTGCAAATGTTGAGCTTGCTCTTGA 1199
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      CTACCTACAGAAGAGCCGCGGGATTGAAAAGACGAAAGAGCTTGCAAGAGAACATGCTAA 1259
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      CCGTGCAATCAAAGCCATAGAAGCTCTCCCAGACAGCGATGATGAAGATGTTCTGACATC 1319
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      AAGGCGTGCTCTTATTGACATCACAGAGAGAGTCATCACTAGAACAAAATAGCAACTGTT 1379
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      AGCATTCACAAGGTGGAGAACTGGAGATAAGGCTGATTTTCGCCACAGGCGTGGTGTTCC 1439
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      ACATGGAAATTTTTGTACACTTTGGTCATTGCATTCTTTTTCATTGTCCAAGTTTTGTGT 1499
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      AGCGTGGATCAAAATTAGGATCTGAATCTATGGATCGGTATTCCTCAGGATCACCCCCAC 1559
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      TCTGCAGCTCTAGTGTTCTTAGTTACGGGTTGCAGCAAAATCTGTGCATTAGTATTACTG 1619
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      ATTGCAATTATCACCAGACTGTAGCACTGTAGCCATATAAGTGGAAGCTTGAAACATAAT 1679
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      ATACGAGGAAAATGGATCGGCTCTCCTATCATGAGAGCACGATTTCGATATGTTTCCCCA 1739
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      CACTTCTCTTGTTGCTTCTGAAGAGAAATCTTGTATGCTTAACTTTGATTGTTTTCAATC 1799
consensus_12018#1      ------------------------------------------------------------
                                                                                   

consensus_12018#0      TTCCAAGATTAGGCGCATTACAAAATATATTGATGTGACCCA 1841
consensus_12018#1      ------------------------------------------
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)