These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2236 fasta sequence [AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATACCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAGTAAGGTTTTCTCTTTTTATCTATAGATTGAATGGGGGAGATGCGATGGCCCAAATGCGTGCGAATGTGGGCGCTGGATTTTTGGGCTCATGCTGGCCGCTTGCGTGGGAGATTTAGGGTGCGCTTTCAGTCTATAGGATTAGATTCTTATCGTTTTTCGTTAGCACGCTTTTCAAACTGCTAAATGATGTATTTCGTGGGAAAACTTTCTATAAAGAAGTTGTTTAAAAAAGTCCAACAAATTTATTCATCAAAAATTTATATATTAATACTTAATTAATTATATGTTAATCACATTTCTCGTTTTACATTCGGCTAATCAGCCCATCCTATCTACTGAAACGAGCACACCCTTATTCTAGTCTTCTGCAATTTTTACTATAATACATAGGGTTTCTAAAATTTACACTTAAATTAGACATAAAAGAGCCCTCCGGTGCAGTGATGTGCACATTTATCTTTTACTTTTGGAATGGTGACATCTTGTCCGCGTATTTCATTTGTTATTGTCCCGAACTTCTGCAAAAGACCAAAAGAACCTCGGCATCATTAAAATCTAAACGTTCAAAACCATCCAATTTTCAACCTTTTTGGTTTGGATTCACTACCAGAAAACTTATCTTTTTATCTAATACCCCAAACCACAACTACACCGGATATATTAAGAACCAATACTAAAAAACTCTTTAGTACCGGTTCTAAAAGCCCAAGTCTCCGAAATATATTTAGCACCGGTTTGTGTTATCAACCGGTAATAAAAATACATCTTTAGTATGGGCTGGTAACACTAACCACGACTAAAGTTGTCTTTAGGATTAGTTAAAAAGAAGCATCACTATCCAAGTTAGACGTGTGTAGTAGGTGGGATGGTAACGTGTGTGAAAGGCTGAGATCATGAGAGATCTTGAGTCTAAATCTCACATCCCACATATTTTTTTGCCTTAGTATATATCTTTAGTACCGGTTCATTCTACCGATACTATAAATTAAATAAAGAACCGGTACTGAAGATCATATCTCTCCTAGCGATTAACATAACTCTTGATAGTGATTAACAAATATAACTCTAATTTAGCGATCACGCATAAGGATGAAAGCAATTTCAAAATTTCAAAATTAATAAATGACTTCAAAAACTCCTAAAAAATTACCCTTGCTATAAAGTATTTATATCCTACATAAATGTGTGCTTAAATCTAAAAAAATTTTATTCCTACAAGACAAATAAACTTTGTTTTGTTCTAGAACAAATTTATGTGCATCTTAAATACGGTTTTGTGGAATTTCTATGAGACTATTTCAGCTGTAGGAATGCACTGTGTGAGAGGCACAGGTCACTGGTGGAGAAACCTTTTTTACTCCCAGTTGGTAACCCCCTTTAGTCCTGGATTTCCAACCAGGAGTAGGAATCCGGGACTAAAGATGCCCATCTTTAGTCCCGGTTGAAATAACCGGGACTAAATCTTTAGTCCCGGTTGGTAGCAAAAACCGGGATTAAAGAGAAAGTTCTTTACACCAACCAGGACTAAAGAGGGATAGCGGCAGTCTAGATGGTCCCTTTTCTTTTTTCTTGTTTCTTTTTTATTTTCTCCCGAATCGGGTGGCATTCACATCCCAAATCAAACCCCAAATCCCCAAATCAAAGTAACATCCCAATCCACATCACAAATCTTAAAGTTACTAACATACACAAATCAAATACATCACAAATCCTAAAAAAATTACACACAAATCAAATACATCACAGACTATACATCTCAGACCCATACAATCCATCACAAAATTATACATATTAGTGAAT] [+] EMBL AK065811 [AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATACCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAGTAAGGTTTTCTCTTTTTATCTATAGATTGAATGGGGGAGATGCGATGGCCCAAATGCGTGCGAATGTGGGCGCTGGATTTTTGGGCTCATGCTGGCCGCTTGCGTGGGAGATTTAGGGTGCGCTTTCAGTCTATAGGATTAGATTCTTATCGTTTTTCGTTAGCACGCTTTTCAAACTGCTAAATGATGTATTTCGTGGGAAAACTTTCTATAAAGAAGTTGTTTAAAAAAGTCCAACAAATTTATTCATCAAAAATTTATATATTAATACTTAATTAATTATATGTTAATCACATTTCTCGTTTTACATTCGGCTAATCAGCCCATCCTATCTACTGAAACGAGCACACCCTTATTCTAGTCTTCTGCAATTTTTACTATAATACATAGGGTTTCTAAAATTTACACTTAAATTAGACATAAAAGAGCCCTCCGGTGCAGTGATGTGCACATTTATCTTTTACTTTTGGAATGGTGACATCTTGTCCGCGTATTTCATTTGTTATTGTCCCGAACTTCTGCAAAAGACCAAAAGAACCTCGGCATCATTAAAATCTAAACGTTCAAAACCATCCAATTTTCAACCTTTTTGGTTTGGATTCACTACCAGAAAACTTATCTTTTTATCTAATACCCCAAACCACAACTACACCGGATATATTAAGAACCAATACTAAAAAACTCTTTAGTACCGGTTCTAAAAGCCCAAGTCTCCGAAATATATTTAGCACCGGTTTGTGTTATCAACCGGTAATAAAAATACATCTTTAGTATGGGCTGGTAACACTAACCACGACTAAAGTTGTCTTTAGGATTAGTTAAAAAGAAGCATCACTATCCAAGTTAGACGTGTGTAGTAGGTGGGATGGTAACGTGTGTGAAAGGCTGAGATCATGAGAGATCTTGAGTCTAAATCTCACATCCCACATATTTTTTTGCCTTAGTATATATCTTTAGTACCGGTTCATTCTACCGATACTATAAATTAAATAAAGAACCGGTACTGAAGATCATATCTCTCCTAGCGATTAACATAACTCTTGATAGTGATTAACAAATATAACTCTAATTTAGCGATCACGCATAAGGATGAAAGCAATTTCAAAATTTCAAAATTAATAAATGACTTCAAAAACTCCTAAAAAATTACCCTTGCTATAAAGTATTTATATCCTACATAAATGTGTGCTTAAATCTAAAAAAATTTTATTCCTACAAGACAAATAAACTTTGTTTTGTTCTAGAACAAATTTATGTGCATCTTAAATACGGTTTTGTGGAATTTCTATGAGACTATTTCAGCTGTAGGAATGCACTGTGTGAGAGGCACAGGTCACTGGTGGAGAAACCTTTTTTACTCCCAGTTGGTAACCCCCTTTAGTCCTGGATTTCCAACCAGGAGTAGGAATCCGGGACTAAAGATGCCCATCTTTAGTCCCGGTTGAAATAACCGGGACTAAATCTTTAGTCCCGGTTGGTAGCAAAAACCGGGATTAAAGAGAAAGTTCTTTACACCAACCAGGACTAAAGAGGGATAGCGGCAGTCTAGATGGTCCCTTTTCTTTTTTCTTGTTTCTTTTTTATTTTCTCCCGAATCGGGTGGCATTCACATCCCAAATCAAACCCCAAATCCCCAAATCAAAGTAACATCCCAATCCACATCACAAATCTTAAAGTTACTAACATACACAAATCAAATACATCACAAATCCTAAAAAAATTACACACAAATCAAATACATCACAGACTATACATCTCAGACCCATACAATCCATCACAAAATTATACATATTAGTGAAT] consensusID : consensus_12063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1639 fasta sequence [AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGA-GGCGTCAGTACAGGCCAGAAAGCATTT-GCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAAGATCTATACTAATCACAAAGCCGAC-AATTA--AGGGGAGAGTTTCAGGGAAGGAGCAGATAAAACACTTTGTATATCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCTGATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCCATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTCTGTTTTATATTATTAATTGTTGTTGACATTTTTCTAAATCCACCTTCTTTTTAGCTTTGATCAAGATTTGTAGAAAAANTTACCTATNTTTCAATGNAAACAAANAACTTGTC] [+] EMBL AK065555 [AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGA GGCGTCAGTACAGGCCAGAAAGCATTT GCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAAGATCTATACTAATCACAAAGCCGAC AATTA AGGGGAGAGTTTCAGGGAAGGAGCAGATAAAACACTTTGTATATCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCTGATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCCATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTCTGTTTTATATTATTAATTGTTGTTG ] [+] EMBL CF309568 [AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGAGGGCGTCAGTACAGGCCAGAAAGCATTTGGCTGGGTGCTCTCACAAATCCCAAAT ] [+] EMBL CB669901 [ AGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGA GGCGTCAGTACAGGCCAGAAAGCATTT GCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAAGATCTATACTAATCACAAAGCCGAC AATTA A ] [+] EMBL CB650347 [ TTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGATATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATATTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATGTTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAGCATCTTCTATGGATGCTAAGGTGGGCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGAGATATGGGTAGAATGAATGAACAGAGATGGATGAAAATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGA GGCGTCAGTACAGGCCAGAAAGCATTT GCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAAGATCTATACTAATCACAAg ] [-] EMBL CB669902 [ AAGATCTATACTAATCACAAAGCCGAC AATTA AGGGGAGAGTTTCAGGGAAGGAGCAGATAAAACACTTTGTATATCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCTGATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCCATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTCTGTTTTATATTATTAATTGTTGTTGA ] [-] EMBL CB650348 [ gttGACGAATTAGCAGGGGAGAGTTTCAGGGAAGGAGCAGATAAAACACTTTGTATATCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCTGATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCCATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTGTGTTTTATATTATTAATTGTTGTTGACATTTTT ] [+] EMBL CA767513 [ AGGGAAGGAGCAGATAAAACACTTTGTATATCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCTGATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCCATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGGTTTAGATGGTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGNTAATCCTTACAGNATGGTTATGNAATCTAATACTACCTCTGGTTTATATTATTAATTGGTGGTGACATTTTTCTAAATCCACCTTCTTTTTAGCTTTGATCAAGATTTGTAGAAAAANTTACCTATNTTTCAATGNAAACAAANAACTTGTC] [-] EMBL CF309569 [ TAGCAATACTCAGCAACACTCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAGCGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAATGTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATATAGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCAAACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCTATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAAGAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTTATATCAATTAATCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTTAATCCTTACAGTATGTTTATGTAATCTAATACTACCTCTGTTTTATATTATTAAaaaa ] consensusID : consensus_12063#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [ACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGAGGCGTCAGTACAGGCCAGAAAGCATTTGCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAA] [+] EMBL AK062790 [ACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGATAGTTCAAGTCCGGGAACTCCTGGGAAGCCTGGCAGCTGAGATGCCGGCATTCTTATCAGACACCACCATCCGCCGTTTCCTAAGGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTCGCTCAAAGAAACTGTCAAGTGGAGGCGTCAGTACAGGCCAGAAAGCATTTGCTGGGTGCTCTCACAAATCCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTGTAATTATTATGTTTTGGACGACATTGCTGACAAGGAGTATGAGGGTAGGAGAGCATATATAGCTGACTACCTTGATGCCAAAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12063#1 AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGA 60 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 AACCACAAACTAGCTAGGTAACTCTGGTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGA 60 consensus_12063#1 TATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGC 120 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 TATATACCTATTCTGAAGCAATGAGTTTCCTGCTGAAGACTAGGAGTGAATCTGACAAGC 120 consensus_12063#1 CGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGA 180 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 CGAAGTCGCCATCTTCTGAAGAACTGCAGCAAAAGCGCGCTACCAGCGGTGAGCCATTGA 180 consensus_12063#1 TATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATA 240 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 TATCCACGCCGACCTCCTCGAGCATGAGAAACGAAGAAGAGCCGTTGCTGCCTAGCTATA 240 consensus_12063#1 TTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATG 300 consensus_12063#2 -----------------------------------ACCACAAACTAGCTAGGTAACTCTG 25 consensus_12063#0 TTGGTGACCAGAGGTCGCCGCATGCCATCGCCTTCACAGCATTTGATGCCGGTCACCATG 300 ** ** * *** ** ** consensus_12063#1 TTGTTGTCGAGCGCCATCCCCTCCCTCTCCATGAG-CATCTTCTATGGATGCTAAGGTGG 359 consensus_12063#2 --GTTTTTTATCGCTTTCTGAAACTAGGTGGCAAGATATATACCTATTCTGAAGCAATGA 83 consensus_12063#0 TTGTTGTCGAGCGCCATACCCTCCCTCTCCATGAG-CATCTTCTATGGATGCTAAGGTGG 359 *** * * *** * * ** ** * * ** ** consensus_12063#1 GCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGA-GATATGGGTAGAATGAATG 418 consensus_12063#2 GTTTCCTGCTGAAGACT----AGGAGTGAATCTGACAAGCCGAAGTCGCCATCTTC--TG 137 consensus_12063#0 GCCACGTGCTCAGGACGTACAGGGAGAGAACATGAGATGA-GATATGGGTAGAATGAATG 418 * * **** * *** **** *** *** * * ** * * * * ** consensus_12063#1 AACAGAGATGGATGAAAATAG---------TTCAAGTCCGGGAACT---CCTGGGAAGCC 466 consensus_12063#2 AAGAACTGCAGCAAAAGATAG---------TTCAAGTCCGGGAACT---CCTGGGAAGCC 185 consensus_12063#0 AACAGAGATGGATGAAAGTAAGGTTTTCTCTTTTTATCTATAGATTGAATGGGGGAGATG 478 ** * * ** ** ** ** * * **** consensus_12063#1 TGGCAGCTGAGATGCCGGCATTCTTA----TCAGACACCACCATCC--GCCGTTTCCTAA 520 consensus_12063#2 TGGCAGCTGAGATGCCGGCATTCTTA----TCAGACACCACCATCC--GCCGTTTCCTAA 239 consensus_12063#0 CGATGGCCCAAATGCGTGCGAATGTGGGCGCTGGATTTTTGGGCTCATGCTGGCCGCTTG 538 * ** * **** ** * ** * ** * ** consensus_12063#1 GGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTC---GCTCAAAGAAACTGTCAAGT 577 consensus_12063#2 GGGCAAGGAACTGGAGCACGGAACAAGCAACCAAGTC---GCTCAAAGAAACTGTCAAGT 296 consensus_12063#0 CGTGGGAGATTTAGGGTGCGCTTTCAGTCTATAGGATTAGATTCTTATCGTTTTTCGTTA 598 * ** * * * ** ** * * ** * * ** consensus_12063#1 GGAGGCGTCAGTACAGGCCAGA--AAGCATTTGCTGGGTG---CTCTCACAAAT------ 626 consensus_12063#2 GGAGGCGTCAGTACAGGCCAGA--AAGCATTTGCTGGGTG---CTCTCACAAAT------ 345 consensus_12063#0 GCACGCTTTTCAAACTGCTAAATGATGTATTTCGTGGGAAAACTTTCTATAAAGAAGTTG 658 * * ** * * ** * * * * **** **** * * *** consensus_12063#1 CCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTG 686 consensus_12063#2 CCCAAATCAACCCCTTTGTTGAGTTTGTACCAATTGTTTTTTCTAAAGCATAATTGTTTG 405 consensus_12063#0 TTTAAAAAAGTCCAACAAATTTATTCATCAAAAATTTATATATTAATACTTAATTAATTA 718 *** * ** * ** * ** * * * * *** * ***** ** consensus_12063#1 TA-ATTATT---ATGTTTTGGACGACATT--GCTGACAAGGAG----TATGAGGGTAGGA 736 consensus_12063#2 TA-ATTATT---ATGTTTTGGACGACATT--GCTGACAAGGAG----TATGAGGGTAGGA 455 consensus_12063#0 TATGTTAATCACATTTCTCGTTTTACATTCGGCTAATCAGCCCATCCTATCTACTGAAAC 778 ** *** * ** * * * ***** *** * ** *** * consensus_12063#1 GAGCATA-------TATAGCTGACTAC----CTTGATGCCAAAGGAAGATCTATACTAAT 785 consensus_12063#2 GAGCATA-------TATAGCTGACTAC----CTTGATGCCAAAGGAA------------- 491 consensus_12063#0 GAGCACACCCTTATTCTAGTCTTCTGCAATTTTTACTATAATACATAGGGTTTCTAAAAT 838 ***** * * *** ** * ** * * * * consensus_12063#1 CACAAAGCCGACAATTAAGGGGAGAGTTTCAGGGAAGGAGCAGATAAAACACTTTGTATA 845 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 TTACACTTAAATTAGACATAAAAGAGCCCTCCGGTGCAGTGATGTGCACATTTATCTTTT 898 consensus_12063#1 TCTCCTGGAGAGTTTGGCTATGAACTCTGCAGATGAACAAGAAGAACATGTTACTTGGCT 905 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 ACTTTTGGAATGGTGACATCTTGTCCGCGTATTTCATTTGTTATTGTCCCGAACTTCTGC 958 consensus_12063#1 GATAGACCTCAGAGGCTGGAGTATATCAAGTACGCCATTATCGACATCCCGTGAATCC-- 963 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 AAAAGACCAAAAGAACCTCGGCATCATTAAAATCTAAACGTTCAAAACCATCCAATTTTC 1018 consensus_12063#1 -ATGCACATAGTTCAAAACTACTATCCAGGGATTATTGCAGTAGCAATACTCAGCAACAC 1022 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 AACCTTTTTGGTTTGGATTCACTACCAGAAAACTTATCTTTTTATCTAATACCCCAAACC 1078 consensus_12063#1 TCCAAGGATTTTTGAATCTTTCTGGAAGATTATAAAGCACTTCTTGGAAGCAAAGATGAG 1082 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 ACAACTACACCGGATATATTAAGAACCAATACTAAAAAACTCTTTAGTACCGGTTCTAAA 1138 consensus_12063#1 CGAGAAGGTGAAGTTTCTATATACTAACAATCCAGAGAGCCACAAGATAGTGTCTGAAAT 1142 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 AGCCCAAGTCTCCGAAATATAT-TTAGCACCGGTTTGTGTTATCAACCGGTAATAAAAAT 1197 consensus_12063#1 GTTTGACATGGATCTGCTGGAGACTGCATTTGGGGGCAGAAATTCAATTACCATTGATAT 1202 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 ACATCTTTAGTATGGGCTGGTAACACTAACCACGACTAAAGTTGTCTTTAGGATTAGTTA 1257 consensus_12063#1 AGACAATTATGCTGAGAGAATGAGGAGATCAGATCTTGCGAGAGGAGTTTTAATCATCCA 1262 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 AAAAGA--AGCATCACTATCCAAGTTAGACGTGTGTAGTAGGTGGGATGGTAACGTGTGT 1315 consensus_12063#1 AACGGACATAAATCTGATTAGTCGACATCACTGAATCTCTATTCTCTGTGGAGAATGCCT 1322 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 GAAAGGCTGAGATCATGAGAGATCTTGAGTCTAAATCTCACATCCC-----ACATATTTT 1370 consensus_12063#1 ATTGCTTAATGACAGCTAATGAAGAACAAGAAGGTACCGTGCAAAAAAGTGGAAGAAAAA 1382 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 TTTGCCTTAGTATATATCTTTAGTACCGGTTCATTCTACCGATACTATAAATTAAATAAA 1430 consensus_12063#1 GAACAAGCCATAGAAAACTACGTGCTCACCTTAGCTGTTTTAGATGTT-ATATCAATTAA 1441 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 GAACCGGTACTGAAGATCATATCTCTCCTAGCGATTAACATAACTCTTGATAGTGATTAA 1490 consensus_12063#1 TCTCAATAATTATGGACGACATGTTGCGCATGATCAAAAAACCAGTT---AATCCTTACA 1498 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 CAAATATAACTCTAATTTAGCGATCACGCATAAGGATGAAAGCAATTTCAAAATTTCAAA 1550 consensus_12063#1 GTATGTTTATGTAATCTAATACTACCTCTGTTTTATA-TTATTAATTGTTGTTGACATTT 1557 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 ATTAATAAATGACTTCAAAAACTCCTAAAAAATTACCCTTGCTATAAAGTATTTATATCC 1610 consensus_12063#1 TTC-TAAATCCAC-CTTCTTTTTAGCTTTGATCAAGATTTGTAGAAAAANTTACCTATNT 1615 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 TACATAAATGTGTGCTTAAATCTAAAAAAATTTTATTCCTACAAGACAAATAAACTTTGT 1670 consensus_12063#1 TTCAATGNAAACAAANAACTTGTC------------------------------------ 1639 consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 TTTGTTCTAGAACAAATTTATGTGCATCTTAAATACGGTTTTGTGGAATTTCTATGAGAC 1730 consensus_12063#1 ------------------------------------------------------------ consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 TATTTCAGCTGTAGGAATGCACTGTGTGAGAGGCACAGGTCACTGGTGGAGAAACCTTTT 1790 consensus_12063#1 ------------------------------------------------------------ consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 TTACTCCCAGTTGGTAACCCCCTTTAGTCCTGGATTTCCAACCAGGAGTAGGAATCCGGG 1850 consensus_12063#1 ------------------------------------------------------------ consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 ACTAAAGATGCCCATCTTTAGTCCCGGTTGAAATAACCGGGACTAAATCTTTAGTCCCGG 1910 consensus_12063#1 ------------------------------------------------------------ consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 TTGGTAGCAAAAACCGGGATTAAAGAGAAAGTTCTTTACACCAACCAGGACTAAAGAGGG 1970 consensus_12063#1 ------------------------------------------------------------ consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 ATAGCGGCAGTCTAGATGGTCCCTTTTCTTTTTTCTTGTTTCTTTTTTATTTTCTCCCGA 2030 consensus_12063#1 ------------------------------------------------------------ consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 ATCGGGTGGCATTCACATCCCAAATCAAACCCCAAATCCCCAAATCAAAGTAACATCCCA 2090 consensus_12063#1 ------------------------------------------------------------ consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 ATCCACATCACAAATCTTAAAGTTACTAACATACACAAATCAAATACATCACAAATCCTA 2150 consensus_12063#1 ------------------------------------------------------------ consensus_12063#2 ------------------------------------------------------------ consensus_12063#0 AAAAAATTACACACAAATCAAATACATCACAGACTATACATCTCAGACCCATACAATCCA 2210 consensus_12063#1 -------------------------- consensus_12063#2 -------------------------- consensus_12063#0 TCACAAAATTATACATATTAGTGAAT 2236 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||