These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 898 fasta sequence [ATCTCCTCCCGTCCCATCCAACCCCGCCCCGTAATACCCCCCCTCCATAACACCCACTGCCACGAGCCCACGACCGCATTAGCATTAGCATTAGCATAAGGGAGGGAGGGAGGGAGGGATCATTAGAGGAGGAGCACAGCACATGGCTGCCGCGGCCGCCACCGTGACGGCGGTGCAGCCAGCGGCGTCGAGCTGCGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGTGCGCCTCTCTCAATCTTCCCCGTCGTCCCTTCTTCCTCTTCCTGACATGTTATCACGTCACGCGCGTGCGTTCACTGCAGGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCTTCGCGGCCAAGTGAGTACTAAGTACATTACGGCAGCATCGCACGGTGACATCGTCTCAGCGCGAGCGAGCTGTGGCCTTTCTGTGACCGTAAGGTTTGGTTTTCTCGGGGATTTATATAGCTATAGCCCTTGCACTCGCAGCATCGGCACGGCAGTGGGCCTGTAAAATTTTCCGCTGCTGCTGAAGCTCGCGAAGTGCAGCTTGTCAGTGTGGTGTTGTTGCACTCGCAGACAGTAAAAACGCCAAATGGGGTTACTGTACATGCCTCTGGGCTTGTGGTTTCCTCTGTATTTTTCTCTTGCTTTTTGTATGCTTAGGCACCGTTTAGATCCCGAACTTTTTTTTTTCAAACTTTTAACTTTTCTGTCACATCGAATTTTCTTACACACATAAATTTTTAAATTTTTCTTTACATCGTTCTAATTTCTTTAAACTTTTAATTTTGACGTGGAACTAAACACAGCCTTATTCTATTATGCCAAATGGAGTTCT] [+] EMBL AK111010 [ATCTCCTCCCGTCCCATCCAACCCCGCCCCGTAATACCCCCCCTCCATAACACCCACTGCCACGAGCCCACGACCGCATTAGCATTAGCATTAGCATAAGGGAGGGAGGGAGGGAGGGATCATTAGAGGAGGAGCACAGCACATGGCTGCCGCGGCCGCCACCGTGACGGCGGTGCAGCCAGCGGCGTCGAGCTGCGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGTGCGCCTCTCTCAATCTTCCCCGTCGTCCCTTCTTCCTCTTCCTGACATGTTATCACGTCACGCGCGTGCGTTCACTGCAGGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCTTCGCGGCCAAGTGAGTACTAAGTACATTACGGCAGCATCGCACGGTGACATCGTCTCAGCGCGAGCGAGCTGTGGCCTTTCTGTGACCGTAAGGTTTGGTTTTCTCGGGGATTTATATAGCTATAGCCCTTGCACTCGCAGCATCGGCACGGCAGTGGGCCTGTAAAATTTTCCGCTGCTGCTGAAGCTCGCGAAGTGCAGCTTGTCAGTGTGGTGTTGTTGCACTCGCAGACAGTAAAAACGCCAAATGGGGTTACTGTACATGCCTCTGGGCTTGTGGTTTCCTCTGTATTTTTCTCTTGCTTTTTGTATGCTTAGGCACCGTTTAGATCCCGAACTTTTTTTTTTCAAACTTTTAACTTTTCTGTCACATCGAATTTTCTTACACACATAAATTTTTAAATTTTTCTTTACATCGTTCTAATTTCTTTAAACTTTTAATTTTGACGTGGAACTAAACACAGCCTTATTCTATTATGCCAAATGGAGTTCT] consensusID : consensus_12068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 557 fasta sequence [ATTAGCATAAGGGAGGGAGGGAGGGAGGGATCATTAGAGGAGGAGCACAGCACATGGCTGCCGCGGCCGCCACCGTGACGGCGGTGCAGCCAGCGGCGTCGAGCTGTGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCTTCGCGGCCAAGTACAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTCAGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTCATGTGTTTAGCTGTAATTTATTTAAGCTCACGAGATGACTAATCATGTAAAAGCTCACCTTGTACGTTAGCAGTAGATGCTTCGCCTGTAACGCATATGCTTAACTTGTCCC-TCGTGCCGATTCTGTCGA] [+] EMBL AK063208 [ATTAGCATAAGGGAGGGAGGGAGGGAGGGATCATTAGAGGAGGAGCACAGCACATGGCTGCCGCGGCCGCCACCGTGACGGCGGTGCAGCCAGCGGCGTCGAGCTGCGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCTTCGCGGCCAAGTACAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTCAGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTCATGTGTTTAGCTGTAATTTATTTAAGCTCACGAGATGACTAATCATGTAAAAGCTCACCTTGTACGTTAGCAGTAGATGCTTCGCCTGTAACGCATATGCTTAACTTGTCg ] [+] EMBL BI306406 [ CGTGACGGCGGTGCAGCCAGCGGCGTCGAGCTGTGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCTTCGCGGCCAAGTACAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTCAGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTCATGTGTTTAGCTGTAATTTATTTAAGCTCACGAGATGACTAATCATGTAAAAGCTCACCTTGTACGTTAGCAGTAGATGCTTCGCCTGTAACGCATATGCTTAACTTGT ] [+] EMBL BI306479 [ CGTGACGGCGGTGCAGCCAGCGGCGTCGAGCTGTGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCTTCGCGGCCAAGTACAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTCAGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTCATGTGTTTAGCTGTAATTTATTTAAGCTCACGAGATGACTAATCATGTAAAAGCTCACCTTGTACGTTAGCAGTAGATGCTTCGCCTGTAACGCATATGCTTAACTTGT ] [-] EMBL BU672828 [ GTGACGCCGGTGCAGCCAGCGGCGTCGAGCTGTGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCTTCGCGGCCAAGTACAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTCAGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTCATGTGTTTA CTGTAATTTATTT GCTCACGAGATGACTAATCATGTAAAAGCT CCTTGTACGTTAGC GTAGATGCTTCGCCTGTAACGCATATGCTTAACTTGTCCC TCGTGCCGATTCTGTCGA] [+] EMBL CB967008 [ GCGGTGCAGCCAGCGGCGTCGAGCTGTGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCTTCGCGGCCAAGTACAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTCAGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTCATGTGTTTAGCTGTAATTTATTTAAGCTCACGAGATGACTAATCATGTAAAAGCTCACCTTGTACGTTAGCAGTAGATGCTTCGCCTGTAACGCATATGCTTAACTTGTCCCTTCGTGCC ] consensusID : consensus_12068#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 454 fasta sequence [GGAATAGCTGCGGCTGCACCGTGACGGCGGTGCAGCCAGCGGCGTCGAGCTGTGGCAAGCG-CGACGGCGACAAT-GCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCCTTCGCGGCCAAGTACAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTCAGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTCATGTGTTTAGCTGTAATTTATTTAAGCTCACGAGATGACTAATCATGTAAAAAAAAAAAAAAAAAAACAGAGCGGGCCGC] [+] EMBL CB964880 [GGAATAGCTGCGGCTGCACCGTGACGGCGGTGCAGCCAGCGGCGTCGAGCTGTGGCAAGCG CGACGGCGACAATGGCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCCTTCGCGGCCAAGTACAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTCAGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTCATGTGTTTAGCTGTAATTTATTTAAGCTCACGAGATGACTAATCATGTAAAAAAAAAAAAAAAAAAACAGAGCGGGCCGC] [+] EMBL CB967160 [ CGGCGGTGCAGCCAGCGGCGTCGAGCTGTGGCAAGCGCCGACGGCGACAAT GCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCCTTCGCGGCCAAGTACAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTCAGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTCATGTGTTTAGCTGTAATTTATTTAAGCTCACGAGATGACTAATCATGTAAAAAAAAAAAAAAAAAAACAGAGCGGGCCGC] [+] EMBL CB966081 [ GGTGCAGCCAGCGGCGTCGAGCTGTGGCAAGCG CGACGGCGACAAT GCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCG CTTCGCGGCCAAGTACAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCGGGTACGCCCGTAAAGAGGATATGTGGCAACAGCCAGTCAAAATGTCAGGAGGATGCACAGACCAATCCTGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAGTTACTCGGTTACTCCATGTCATGTGTTTAGCTGTAATTTATTTAAGCTCACGAGATGACTAATCATGTAAAAAAAAAAAAAAAAAAACAGAGCGGGCCGC] consensusID : consensus_12068#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [CTGGGCCGCCACCGTGACGGCGGTGCATGCCAGCGGCGTCGAGCTGTGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCNCCGCGGCGGTAATCAGCGTGGCTCGGCGCTTCGCGGCCNGGTGCAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCCGGTACGCCCGTTTGCAGGATTTGTGGCTCCAGCCAGTCTCAATGTCTTGAGGATGCTCTGACCCCTCCTGTCCTTTTGATT] [+] EMBL BI305775 [CTGGGCCGCCACCGTGACGGCGGTGCATGCCAGCGGCGTCGAGCTGTGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAGGTGGAGGCCTTCCTCNCCGCGGCGGTAATCAGCGTGGCTCGGCGCTTCGCGGCCNGGTGCAACTATGACATCGTCAAGGACGCTCCGATGGATGGCCGGTACGAGTGGGTCCCGGTACGCCCGTTTGCAGGATTTGTGGCTCCAGCCAGTCTCAATGTCTTGAGGATGCTCTGACCCCTCCTGTCCTTTTGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12068#1 ------------------------------------------------------------ consensus_12068#2 ------------------------------------------------------------ consensus_12068#3 ------------------------------------------------------------ consensus_12068#0 ATCTCCTCCCGTCCCATCCAACCCCGCCCCGTAATACCCCCCCTCCATAACACCCACTGC 60 consensus_12068#1 -----------------------------ATTAGCATAAGGGAGGGAGGGAGGGAGGGAT 31 consensus_12068#2 ------------------------------------------------------------ consensus_12068#3 ------------------------------------------------------------ consensus_12068#0 CACGAGCCCACGACCGCATTAGCATTAGCATTAGCATAAGGGAGGGAGGGAGGGAGGGAT 120 consensus_12068#1 CATTAGAGGAGGAGCACAGCACATGGCTGCCGCGGCCGCCACCGTGACGGCGGTGCA-GC 90 consensus_12068#2 ----------------------GGAATAGCTGCGGCTGC-ACCGTGACGGCGGTGCA-GC 36 consensus_12068#3 -----------------------------CTG-GGCCGCCACCGTGACGGCGGTGCATGC 30 consensus_12068#0 CATTAGAGGAGGAGCACAGCACATGGCTGCCGCGGCCGCCACCGTGACGGCGGTGCA-GC 179 * * *** ** ***************** ** consensus_12068#1 CAGCGGCGTCGAGCTGTGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATG---- 146 consensus_12068#2 CAGCGGCGTCGAGCTGTGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATG---- 92 consensus_12068#3 CAGCGGCGTCGAGCTGTGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATG---- 86 consensus_12068#0 CAGCGGCGTCGAGCTGCGGCAAGCGCGACGGCGACAATGCGTGCGTCGTCGACATGTGCG 239 **************** *************************************** consensus_12068#1 ------------------------------------------------------------ consensus_12068#2 ------------------------------------------------------------ consensus_12068#3 ------------------------------------------------------------ consensus_12068#0 CCTCTCTCAATCTTCCCCGTCGTCCCTTCTTCCTCTTCCTGACATGTTATCACGTCACGC 299 consensus_12068#1 ------------------CCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAG 188 consensus_12068#2 ------------------CCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAG 134 consensus_12068#3 ------------------CCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAG 128 consensus_12068#0 GCGTGCGTTCACTGCAGGCCCAGGAAGGCGAAGAAGGGGAGGTCGCCGCCGGAGGAGGAG 359 ****************************************** consensus_12068#1 GTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGC-TTCGCGGCCAAGTA 247 consensus_12068#2 GTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGCCTTCGCGGCCAAGTA 194 consensus_12068#3 GTGGAGGCCTTCCTCNCCGCGGCGGTAATCAGCGTGGCTCGGCGC-TTCGCGGCCNGGTG 187 consensus_12068#0 GTGGAGGCCTTCCTCGCCGCGGCGGAGAGCAGCGTGGCGCGGCGC-TTCGCGGCCAAGTG 418 *************** ********* * ********* ****** ********* ** consensus_12068#1 CA-ACTATG-ACAT--CGTCAAGGACGCTCCGATGGATGGCC--GGTACGAGTGGGTCCG 301 consensus_12068#2 CA-ACTATG-ACAT--CGTCAAGGACGCTCCGATGGATGGCC--GGTACGAGTGGGTCCG 248 consensus_12068#3 CA-ACTATG-ACAT--CGTCAAGGACGCTCCGATGGATGGCC--GGTACGAGTGGGTCCC 241 consensus_12068#0 AGTACTAAGTACATTACGGCAGCATCGCACGGTGACATCGTCTCAGCGCGAGCGAGCTGT 478 **** * **** ** ** *** * * ** * * * **** * * consensus_12068#1 GGTACGCCCGTAAAGAGGATATGTGGCAA---CAGCCAGTCAAAATGTCAGGA-----GG 353 consensus_12068#2 GGTACGCCCGTAAAGAGGATATGTGGCAA---CAGCCAGTCAAAATGTCAGGA-----GG 300 consensus_12068#3 GGTACGCCCGTTTGCAGGATTTGTGGCTC---CAGCCAGTCTCAATGTCTTGA-----GG 293 consensus_12068#0 GGCCTTTCTGTGACCGTAAGGTTTGGTTTTCTCGGGGATTTATATAGCTATAGCCCTTGC 538 ** * ** * * *** * * * * * * * consensus_12068#1 ATGCACAG-ACCAATCC-----TGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAG 407 consensus_12068#2 ATGCACAG-ACCAATCC-----TGTCCTAATGAATCTTTTCTTTACCCATGTATATGTAG 354 consensus_12068#3 ATGCTCTG-ACCCCTCC-----TGTCCTTTTGATT------------------------- 322 consensus_12068#0 ACTCGCAGCATCGGCACGGCAGTGGGCCTGTAAAATTTTCCGCTGCTGCTGAAGCTCGCG 598 * * * * * * * ** * * * consensus_12068#1 TTACTCGGTTACTCCATGTCATGT-GTTTAGCTGTAATTTATTTAAGCTCACGAGATGAC 466 consensus_12068#2 TTACTCGGTTACTCCATGTCATGT-GTTTAGCTGTAATTTATTTAAGCTCACGAGATGAC 413 consensus_12068#3 ------------------------------------------------------------ consensus_12068#0 AAGTGCAGCTTGTCAGTGTGGTGTTGTTGCACTCGCAGACAGTAAAAACGCCAAATGGGG 658 consensus_12068#1 TAATCATGTAAAAGCTCACCTTGTACGTTAGCAGTAGATGCTTCGCCTGTAACGCATATG 526 consensus_12068#2 TAATCATGTAAAAAAAAAAAAAAAAAAACAGAGCGGGCCGC------------------- 454 consensus_12068#3 ------------------------------------------------------------ consensus_12068#0 TTACTGTACATGCCTCTGGGCTTGTGGTTTCCTCTGTATTTTTCTCTTGCTTTTTGTATG 718 consensus_12068#1 CTTAACTTGTCCCTCGTGCCGATTCTGTCGA----------------------------- 557 consensus_12068#2 ------------------------------------------------------------ consensus_12068#3 ------------------------------------------------------------ consensus_12068#0 CTTAGGCACCGTTTAGATCCCGAACTTTTTTTTTTCAAACTTTTAACTTTTCTGTCACAT 778 consensus_12068#1 ------------------------------------------------------------ consensus_12068#2 ------------------------------------------------------------ consensus_12068#3 ------------------------------------------------------------ consensus_12068#0 CGAATTTTCTTACACACATAAATTTTTAAATTTTTCTTTACATCGTTCTAATTTCTTTAA 838 consensus_12068#1 ------------------------------------------------------------ consensus_12068#2 ------------------------------------------------------------ consensus_12068#3 ------------------------------------------------------------ consensus_12068#0 ACTTTTAATTTTGACGTGGAACTAAACACAGCCTTATTCTATTATGCCAAATGGAGTTCT 898 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||