These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1140 fasta sequence [GCAAACTCAACAAAAAGGAGTATGTGTTCAGAGAGCCAAGAGATGTTCGTCTTGGTGACATAATGGAGAAGCTTAGTCATATCTATGAGGCTAAAATGGATGGCAATCACACCTTACACATCATTCCGGATTCGAGACAAGTCAACGCTGATGAGTTGCAACCTGGTGTCTGCTATCTGCAGATAACTGCTGTTGATCCTGTAATGGAGGATGAGGACCTAGGGAGTAGAAGGGAAAGGATTTTCTCTTTATCTACTGGTACTGTCCGGGCCCGTGTGTTCGACCGTTTTCTTTTTGATACACCATTCACAAAGAATGGAAAAACACAAGGTGGCCTTGAAGATCAGTGGAAGAGGCGCACAGTACTCCAGACAGAGGGTTCCTTTCCTGCTTTGGTGAATCGTCTGTTAGTGATCAAATCAGAATCTCTAGAGTTTTCTCCTGTTGAGAATGCGATTGGAATGATCGAGACAAGGACAGCTGCCTTGCGAAATGAACTAGAAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACT-AGTCAATGGCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT-AACTGTATTCTAGCAAGCTGGC-AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT-AGGCTTT-TCAATTC-TGTTCTGTTTGCAATGCCGTG-CCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTATTCGAGTGGACAAAAAAAATCATCTGGAGTGATAAAAAAAAAA] [+] EMBL AK059469 [GCAAACTCAACAAAAAGGAGTATGTGTTCAGAGAGCCAAGAGATGTTCGTCTTGGTGACATAATGGAGAAGCTTAGTCATATCTATGAGGCTAAAATGGATGGCAATCACACCTTACACATCATTCCGGATTCGAGACAAGTCAACGCTGATGAGTTGCAACCTGGTGTCTGCTATCTGCAGATAACTGCTGTTGATCCTGTAATGGAGGATGAGGACCTAGGGAGTAGAAGGGAAAGGATTTTCTCTTTATCTACTGGTACTGTCCGGGCCCGTGTGTTCGACCGTTTTCTTTTTGATACACCATTCACAAAGAATGGAAAAACACAAGGTGGCCTTGAAGATCAGTGGAAGAGGCGCACAGTACTCCAGACAGAGGGTTCCTTTCCTGCTTTGGTGAATCGTCTGTTAGTGATCAAATCAGAATCTCTAGAGTTTTCTCCTGTTGAGAATGCGATTGGAATGATCGAGACAAGGACAGCTGCCTTGCGAAATGAACTAGAAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACT AGTCAATGGCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT AACTGTATTCTAGCAAGCTGGC AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT AGGCTTT TCAATTC TGTTCTGTTTGCAATGCCGTG CCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTAT ] [+] EMBL CA999629 [ AGCTTAGTCATATCTATGAGGCTAAAATGGATGGCAATCACACCTTACACATCATTCCGGATTCGAGACAAGTCAACGCTGATGAGTTGCAACCTGGTGTCTGCTATCTGCAGATAACTGCTGTTGATCCTGTAATGGAGGATGAGGACCTAGGGAGTAGAAGGGAAAGGATTTTCTCTTTATCTACTGGTACTGTCCGGGCCCGTGTGTTCGACCGTTTTCTTTTTGATACACCATTCACAAAGAAT ] [+] EMBL AU031318 [ GTAATGGAGGATGAGGACCTAGGGAGTAGAAGGGAAAGGATTTTCTCTTTATCTACTGGTACTGTCCGGGCCCGTGTGTTCGACCGTTTTCTTTTTGATACACCATTCACAAAGAATGGAAAAACACAAGGTGGCCTTGAAGATCAGTGGAAGAGGCGCACAGTACTCCAGACAGAGGGTTCCTTTCCTGCTTTGGTGAATCGTCTGTTAGTGATCAAATCAGAATCTCTAGAGTTTTCTCCTGTTGAGAATGCGATTGGAATGATCGAGACAAGGACAGCTGCCTTGCGAAATGAACTAGAAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACANTCAACT AGTCAATGGCTTTCAGTCGCTCACAGCTGAGCTNTCACACTATATTCCTGCAATTCTTTCAGAGCTATAAACTGTATTCTAGCAAGCTGGCAAAGTAGGTAGCATTTGAAT ] [+] EMBL AU068629 [ TCTGTTAGTGATCAAATCAGAATCTCTAGAGTTTTCTCCTGTTGAGAATGCGATTGGAATGATCGAGACAAGGACAGCTGCCTTGCGAAATGAACTAGAAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACT AGTCAATGGCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT AACTGTATTCTAGCAAGCTGGC AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT AGGCTTT TCAATTC TGTTCTGTTTGCAATGCCGTG CCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTATTCGAGTGGACAAAAAAAA ] [+] EMBL AU030634 [ AAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAANTNGGGCAATGGCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT AACTGTATTCTAGCAAGCTGGC AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT AGGCTTT TCAATTC TGTTCTGTTTGCAATGCCGTG CCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTATTCGAGTGAAAAA ] [+] EMBL CA765043 [ GAAGGTGACCAACTCCCAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATTAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACAAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATACGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACT AGTCAATGGCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT AACTGTATTCTAGCAAGCTGGC AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT AGGCTTT TCAATTC TGTTCTGTTTGCAATGCCGTG CCACGATTTT GGGGTGTAAAGCTTGTGTAATCCTTAGNGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTATTC ] [+] EMBL CA753078 [ CAAGACTCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTATCAAGTGTGTGCACTGCATTCTTATCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAACTGCAGCAGCTCATCGCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATACGTGTGCATATTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACT AGTCAATGGCTTCCAGTCGCTCACAGCTGAGCTTTCACACTATATGCCTGCAATTCTTTCAGAGCTAT AACTGTATCCTAGCAAGCTGGG CAGTAAGTAGCATGTGAATGGTTCATTCTTTCCGTTGGGGCTCCCCCCCTTGTCCTTAATTCCGTTAGTGTGGTTGTATAGTTCTGGAAAACTAACTAAGGCTTTCCCATTTCGTGTTCTGTTTGGCATGCCCTGCCCCCCATTTTGGGGGTGTt ] [+] EMBL BQ908361 [ CAAGCTGGC AAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGGGGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACT AGGCTTT TCAATTC TGTTCTGTTTGCAATGCCGTG CCACGATTTT GGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCAGTAACTATTCGAGTGGACAGTTGTGTTCATCTGGAGTGATAAAAAAAAAA] consensusID : consensus_12072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 583 fasta sequence [AAGGAAAGTTTGGCTNTTCAGGTAATAAGTGGTGTATTAAGTGTGTGCACTGCATTCTTAATCTGGTGACCCCGCAACTAGGCNCCGATCTCAAGAACTGNCAGCAGCTCATCCGCTGCATGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACTAGTCAATGGCTTTCAGTCGCTCACAGCTGAGCT-TTCACACTATATTCCT-GCAATTCTTTCAGAGCTATAACTGT-ATTCTAGCAAGCTGGCAAGT-AGGTAGCATTTGAATGGTTCATTCTTT-CAGTTGGGGCTCCCCA-CCT-TGTCCATAATTCCGTTAGTTT-GGTTGTATAGTTCT-GGAAAACTAACTAGGCTT-TT-CAATTCTGTTCTGTTTGCAATGCCGTGCCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCNGTAACTATTCGNGTGGACAGTTGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031319 [AAGGAAAGTTTGGCTNTTCAGGTAATAAGTGGTGTATTAAGTGTGTGCACTGCATTCTTAATCTGGTGACCCCGCAACTAGGCNCCGATCTCAAGAACTGNCAGCAGCTCATCCGCTGCATGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCCGTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACTAGTCAATGGCTTTCAGTCGCTCACAGCTGAGCT TTCACACTATATTCCT GCAATTCTTTCAGAGCTATAACTGT ATTCTAGCAAGCTGGCAAGT AGGTAGCATTTGAATGGTTCATTCTTT CAGTTGGGGCTCCCCA CCT TGTCCATAATTCCGTTAGTTT GGTTGTATAGTTCT GGAAAACTAACTAGGCTT TT CAATTCTGTTCTGTTTGCAATGCCGTGCCACGATTTTGGGGGTGTAAAGCTTGTGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGCAAGCTATATAGCNGTAACTATTCGNGTGGACAGTTGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL BU667226 [ ATGGCTTTCAGTCGCTCACAGCTGAGCTGTTCACACTATATTCCTCGCAATTCTTTCAGAGCTATAACTGTGATTCTAGCAAGCTGGCAAGTGAGGTAGCATTTGAATGGTTCATTCTTTCCAGTTGGGGCTCCCCACCCTGTGTCCATAATTCCGTTAGTTTGGGTTGTATAGTTCTGGGAAAACTAACTAGGCTTGTTGCAATTCTGTTCTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12072#0 GCAAACTCAACAAAAAGGAGTATGTGTTCAGAGAGCCAAGAGATGTTCGTCTTGGTGACA 60 consensus_12072#1 ------------------------------------------------------------ consensus_12072#0 TAATGGAGAAGCTTAGTCATATCTATGAGGCTAAAATGGATGGCAATCACACCTTACACA 120 consensus_12072#1 ------------------------------------------------------------ consensus_12072#0 TCATTCCGGATTCGAGACAAGTCAACGCTGATGAGTTGCAACCTGGTGTCTGCTATCTGC 180 consensus_12072#1 ------------------------------------------------------------ consensus_12072#0 AGATAACTGCTGTTGATCCTGTAATGGAGGATGAGGACCTAGGGAGTAGAAGGGAAAGGA 240 consensus_12072#1 ------------------------------------------------------------ consensus_12072#0 TTTTCTCTTTATCTACTGGTACTGTCCGGGCCCGTGTGTTCGACCGTTTTCTTTTTGATA 300 consensus_12072#1 ------------------------------------------------------------ consensus_12072#0 CACCATTCACAAAGAATGGAAAAACACAAGGTGGCCTTGAAGATCAGTGGAAGAGGCGCA 360 consensus_12072#1 ------------------------------------------------------------ consensus_12072#0 CAGTACTCCAGACAGAGGGTTCCTTTCCTGCTTTGGTGAATCGTCTGTTAGTGATCAAAT 420 consensus_12072#1 ------------------------------------------------------------ consensus_12072#0 CAGAATCTCTAGAGTTTTCTCCTGTTGAGAATGCGATTGGAATGATCGAGACAAGGACAG 480 consensus_12072#1 ------------------------------------------------------------ consensus_12072#0 CTGCCTTGCGAAATGAACTAGAAGAACCACGCAGTTCGGAAGGTGACCAACTCCCAAGAC 540 consensus_12072#1 ------------------------------------------------------------ consensus_12072#0 TCCAAAGCCTGCAGAGGATACTCCAAGGAAGTGTGGCTGTTCAGGTAAATAGTGGTGTAT 600 consensus_12072#1 -----------------------AAGGAAAGTTTGGCTNTTCAGGTAATAAGTGGTGTAT 37 * * **** ***** ********* ********** consensus_12072#0 TAAGTGTGTGCACTGCATTCTTA-TCTGGTGAGCCCGCAACTAGGCTCCGATCTCAAGAA 659 consensus_12072#1 TAAGTGTGTGCACTGCATTCTTAATCTGGTGACCCCGCAACTAGGCNCCGATCTCAAGAA 97 *********************** ******** ************* ************* consensus_12072#0 CTGC-AGCAGCTCATC-GCTGCATTGCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCC 717 consensus_12072#1 CTGNCAGCAGCTCATCCGCTGCAT-GCTGGAATTCATGGCCGTCTGCAAGCGCGCAATCC 156 *** *********** ******* *********************************** consensus_12072#0 GTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACTAGTCAATG 777 consensus_12072#1 GTGTGCATTTTAGATTGATAGGGGAAGAAGACCAGGAATTCCACACTCAACTAGTCAATG 216 ************************************************************ consensus_12072#0 GCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT 837 consensus_12072#1 GCTTTCAGTCGCTCACAGCTGAGCTTTCACACTATATTCCTGCAATTCTTTCAGAGCTAT 276 ************************************************************ consensus_12072#0 AACTGTATTCTAGCAAGCTGGCAAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGG 897 consensus_12072#1 AACTGTATTCTAGCAAGCTGGCAAGTAGGTAGCATTTGAATGGTTCATTCTTTCAGTTGG 336 ************************************************************ consensus_12072#0 GGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACTA 957 consensus_12072#1 GGCTCCCCACCTTGTCCATAATTCCGTTAGTTTGGTTGTATAGTTCTGGAAAACTAACTA 396 ************************************************************ consensus_12072#0 GGCTTTTCAATTCTGTTCTGTTTGCAATGCCGTGCCACGATTTTGGGGGTGTAAAGCTTG 1017 consensus_12072#1 GGCTTTTCAATTCTGTTCTGTTTGCAATGCCGTGCCACGATTTTGGGGGTGTAAAGCTTG 456 ************************************************************ consensus_12072#0 TGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGC 1077 consensus_12072#1 TGTAATCCTTAGTGTGTTGTATCTCTATTACCTTGTTTATGCGGTTTGTAGACTAATAGC 516 ************************************************************ consensus_12072#0 AAGCTATATAGCAGTAACTATTCGAGTGGACAAAAAAAATCATCTGGAGTGATAAAAAAA 1137 consensus_12072#1 AAGCTATATAGCNGTAACTATTCGNGTGGACAGTTGTGTTCAAAAAAAAAAAAAAAAAAA 576 ************ *********** ******* *** * * ******* consensus_12072#0 AAA---- 1140 consensus_12072#1 AAAAAAA 583 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||