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Oryza sativa
cluster # 12076 cluster # 12076       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12076#0 length = 870 sequences # 8  
consensus_12076#1 length = 324 sequences # 1  
consensus_12076#2 length = 244 sequences # 1  

consensusID : consensus_12076#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 870
fasta sequence
                              [AAAGCGCCACCCACCAAGTCCACCAAGGCACCCGCCCCGGCGCCCAAGGCGGCCAAGGCCACCCCGCCGCCGGCCTCGTCTCCCCCGGTCGAGGCTCCCGTCGCGTCGCCTCCTTCCCCCGCCGCCGAGGCGCCCGCCACCATCCCCACCAAGCCCGACGCACCCGCGCCGGCGCCGGCCAAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCCTCGTNCACGGNCGACGCCCCCGGCCCCGCCGGNGACGGTGTCGCCGCCGACTCCACGGGAGCCGC-AGGGAGGACCAGCGTGCAGGCGATCGCG-TCGGCGTGCGCCGTGGCGC-TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC-GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA------GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC-GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC-GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC-GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATCTTTTTT---NTCAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU173775             [AAAGCGCCACCCACCAAGTCCACCAAGGCACCCGCCCCGGCGCCCAAGGCGGCCAAGGCCACCCCGCCGCCGGCCTCGTCTCCCCCGGTCGAGGCTCCCGTCGCGTCGCCTCCTTCCCCCGCCGCCGAGGCGCCCGCCACCATCCCCACCAAGCCCGACGCACCCGCGCCGGCGCCGGCCAAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCCTCGTNCACGGNCGACGCCCCCGGCCCCGCCGGNGACGGTGTCGCCGCCGACTCCACGGGAGCCGCAAGGGAGGACCAGCGTGCAGGCGATCGCGTTCGGCGTGCGCCGTGGCGCTTAGGCCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK062359             [                                                                                                                                                      AAGCCCGACGCACCCGCGCCGGCGCCGGCCAAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCCTCGTCCACGGCCGACGCCCCCGGCCCCGCCGGCGACGGTGTCGCCGCCGACTCCACGGGAGCCGC AGGGAGGACCAGCGTGCAGGCGATCGCG TCGGCGTGCGCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA      GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGT                                                                                                       ]
[+] EMBL AU173774             [                                                                                                                                                                                                                                                                                                                                                                                  GGGAGGACCAGCGTGCAGGCGATCGCG TCGGCGTGCNCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTCAGATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA      GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGANTNATTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCCTGCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTAaaaaa                                                                    ]
[-] EMBL CB967154             [                                                                                                                                                                                                                                                                                                                                                                                                   GGCGATCGCG TCGGCGTGCGCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTAGCTTTGGCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATC                                     ]
[+] EMBL AU031179             [                                                                                                                                                                                                                                                                                                                                                                                                    gatccnctG TCGGCGTGCNCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCTTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCNCGTC GATTCTTTTNCGGGACGGGAGGGNGGAGGAGGAGGGACCTTA      GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTG TAC GCCCNCGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATNGATCTGTNNTCTTTTTTNTNNTCAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA999726             [                                                                                                                                                                                                                                                                                                                                                                                                                                          GTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA      GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTT                                                            ]
[+] EMBL AU184750             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CANCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTGCGGGACGGGAGGGAGGAGGAGGAGGGNCCTTA      GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATCGGCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTNTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATCTTTTTT   CTCAAAAAAAAAA               ]
[+] EMBL AU184742             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAACGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGNCCTTA      GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTACAGCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCAaaaaa                                                                                          ]


>consensus_12076#0 AAAGCGCCACCCACCAAGTCCACCAAGGCACCCGCCCCGGCGCCCAAGGCGGCCAAGGCC ACCCCGCCGCCGGCCTCGTCTCCCCCGGTCGAGGCTCCCGTCGCGTCGCCTCCTTCCCCC GCCGCCGAGGCGCCCGCCACCATCCCCACCAAGCCCGACGCACCCGCGCCGGCGCCGGCC AAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCC CCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCC GCCTCGTNCACGGNCGACGCCCCCGGCCCCGCCGGNGACGGTGTCGCCGCCGACTCCACG GGAGCCGCAGGGAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGCCGTGGCGCTCGGC CTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACG ACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTCGAT TCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTAGCTTTGGCTTTGGCTTTACCA CTCTCCCAACCACATTTGATGATTGAGCGATCGCCATGCCTCGGATTCTTTTGTTTCTTT CTTCTTCTTCTTCTTCTCTCTGCTACGCCCACGATATGACTCTGCTAGCTGCTGCCTGCC CGCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATC ATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATCTTTT TTNTCAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12076#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence
                              [AAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCNTCGTCCACGGCCGACGCCCCCGGCCCCNCGNCGAACGGTGTCGCNCGNACTCCACGGGAGCCGCAGGAAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGCGTGGCNTTCGGCCTCGTCGCCCTCNTCGCCTAAGCAAAACNGCGTCGTGCAAGNTGNANGCAACGACGACGACGCAGATNGCAGCGGCCGGTGCGCCCCACNACATTTTNCGCTGTATTTTGCTCGTCGATTCT]

[+] EMBL AU031178             [AAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCNTCGTCCACGGCCGACGCCCCCGGCCCCNCGNCGAACGGTGTCGCNCGNACTCCACGGGAGCCGCAGGAAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGCGTGGCNTTCGGCCTCGTCGCCCTCNTCGCCTAAGCAAAACNGCGTCGTGCAAGNTGNANGCAACGACGACGACGCAGATNGCAGCGGCCGGTGCGCCCCACNACATTTTNCGCTGTATTTTGCTCGTCGATTCT]


>consensus_12076#1 AAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCAC TCCAAGAAGGCTAAGGCCCCCGCCGCNTCGTCCACGGCCGACGCCCCCGGCCCCNCGNCG AACGGTGTCGCNCGNACTCCACGGGAGCCGCAGGAAGGACCAGCGTGCAGGCGATCGCGT CGGCGTGCGCGTGGCNTTCGGCCTCGTCGCCCTCNTCGCCTAAGCAAAACNGCGTCGTGC AAGNTGNANGCAACGACGACGACGCAGATNGCAGCGGCCGGTGCGCCCCACNACATTTTN CGCTGTATTTTGCTCGTCGATTCT



consensusID : consensus_12076#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence
                              [ATCGCCCATGCCCCGGGAATTCCTTTGGTTTCCTTNTTTCTTCTTTCTTCTTCTCTCTGCTACGGCCCACGAATAATGACTTNTGCTAAGCTGCTGGCCTGGCCCGCCCCTGGTACTGGTCCCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGGTCATCATCATCATTGATTCATTGTATTTATTCCATCTTGGCCCGGATCATAGATCTGTCATCTTTTTTCTCATCCAAAAAAA]

[+] EMBL AU184124             [ATCGCCCATGCCCCGGGAATTCCTTTGGTTTCCTTNTTTCTTCTTTCTTCTTCTCTCTGCTACGGCCCACGAATAATGACTTNTGCTAAGCTGCTGGCCTGGCCCGCCCCTGGTACTGGTCCCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGGTCATCATCATCATTGATTCATTGTATTTATTCCATCTTGGCCCGGATCATAGATCTGTCATCTTTTTTCTCATCCAAAAAAA]


>consensus_12076#2 ATCGCCCATGCCCCGGGAATTCCTTTGGTTTCCTTNTTTCTTCTTTCTTCTTCTCTCTGC TACGGCCCACGAATAATGACTTNTGCTAAGCTGCTGGCCTGGCCCGCCCCTGGTACTGGT CCCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGGTCATCATCATCATTGATT CATTGTATTTATTCCATCTTGGCCCGGATCATAGATCTGTCATCTTTTTTCTCATCCAAA AAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12076#0      AAAGCGCCACCCACCAAGTCCACCAAGGCACCCGCCCCGGCGCCCAAGGCGGCCAAGGCC 60
consensus_12076#1      ------------------------------------------------------------
consensus_12076#2      ------------------------------------------------------------
                                                                                   

consensus_12076#0      ACCCCGCCGCCGGCCTCGTCTCCCCCGGTCGAGGCTCCCGTCGCGTCGCCTCCTTCCCCC 120
consensus_12076#1      ------------------------------------------------------------
consensus_12076#2      ------------------------------------------------------------
                                                                                   

consensus_12076#0      GCCGCCGAGGCGCCCGCCACCATCCCCACCAAGCCCGACGCACCCGCGCCGGCGCCGGCC 180
consensus_12076#1      ------------------------------------------------------------
consensus_12076#2      ------------------------------------------------------------
                                                                                   

consensus_12076#0      AAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCC 240
consensus_12076#1      ------------------------------------AAGAAGAGCTCCAAGGCCCCCGCC 24
consensus_12076#2      ------------------------------------------------------------
                                                                                   

consensus_12076#0      CCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCC 300
consensus_12076#1      CCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCC 84
consensus_12076#2      ---------------------------------------------------------ATC 3
                                                                                  *

consensus_12076#0      GCCTCGTNCACGGNCGACGCCCCCGGCCCCGCCGGNGACGGTGTCGCCGCCGACTCCACG 360
consensus_12076#1      GCNTCGTCCACGGCCGACGCCCCCGGCCCCNCGNCGAACGGTGTCGCN-CGNACTCCACG 143
consensus_12076#2      GCCCATGCCCCGGGAATTCCTTTGGTTTCCTTNTTTCTTCTTTCTTCTTCTCTCTGCTAC 63
                       **      * ***      *    *   **           *    *  *   ** *   

consensus_12076#0      GGAGCCGCAGGGAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGCCGTGGCGCTCGGC 420
consensus_12076#1      GGAGCCGCAGGAAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGC-GTGGCNTTCGGC 202
consensus_12076#2      GGCCCACGAATAATGACTTNTGC-TAAGCTGCTGGCCTGGCCCGCCC-CTGGTACT-GGT 120
                       **  *   *   * ***    *   * **    *    ***  ** *  ***   * ** 

consensus_12076#0      CTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACG 480
consensus_12076#1      CTCGTCGCCCTCNTCGCCTAAGCAAAACNGCGTCGTGCAA-GNTGNANGCAACGACGACG 261
consensus_12076#2      CCCACTGAGATCATCTACT--TTTAATTTATTTTATGTTG-CTGGTCATCATCATCATTG 177
                       * *   *   ** **  **     **      *  **       *    ** *  *   *

consensus_12076#0      ACGCAGATGGCAGCGGCCGGTGCGCCCC--ACCACATTTTGCGCTGTATTTTGCTCGTCG 538
consensus_12076#1      ACGCAGATNGCAGCGGCCGGTGCGCCCC--ACNACATTTTNCGCTGTATTTTGCTCGTCG 319
consensus_12076#2      ATTCATTGTATTTATTCCATCTTGGCCCGGATCATAGATCTGTCATCTTTTTTCTCATCC 237
                       *  **           **     * ***  *  * *  *    *    **** *** ** 

consensus_12076#0      ATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTAGCTTTGGCTTTGGCTTTAC 598
consensus_12076#1      ATTCT------------------------------------------------------- 324
consensus_12076#2      AAAAAAA----------------------------------------------------- 244
                       *                                                           

consensus_12076#0      CACTCTCCCAACCACATTTGATGATTGAGCGATCGCCATGCCTCGGATTCTTTTGTTTCT 658
consensus_12076#1      ------------------------------------------------------------
consensus_12076#2      ------------------------------------------------------------
                                                                                   

consensus_12076#0      TTCTTCTTCTTCTTCTTCTCTCTGCTACGCCCACGATATGACTCTGCTAGCTGCTGCCTG 718
consensus_12076#1      ------------------------------------------------------------
consensus_12076#2      ------------------------------------------------------------
                                                                                   

consensus_12076#0      CCCGCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCA 778
consensus_12076#1      ------------------------------------------------------------
consensus_12076#2      ------------------------------------------------------------
                                                                                   

consensus_12076#0      TCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATCTT 838
consensus_12076#1      ------------------------------------------------------------
consensus_12076#2      ------------------------------------------------------------
                                                                                   

consensus_12076#0      TTTTNTCAAAAAAAAAAAAAAAAAAAAAAAAA 870
consensus_12076#1      --------------------------------
consensus_12076#2      --------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)