These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 870 fasta sequence [AAAGCGCCACCCACCAAGTCCACCAAGGCACCCGCCCCGGCGCCCAAGGCGGCCAAGGCCACCCCGCCGCCGGCCTCGTCTCCCCCGGTCGAGGCTCCCGTCGCGTCGCCTCCTTCCCCCGCCGCCGAGGCGCCCGCCACCATCCCCACCAAGCCCGACGCACCCGCGCCGGCGCCGGCCAAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCCTCGTNCACGGNCGACGCCCCCGGCCCCGCCGGNGACGGTGTCGCCGCCGACTCCACGGGAGCCGC-AGGGAGGACCAGCGTGCAGGCGATCGCG-TCGGCGTGCGCCGTGGCGC-TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC-GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA------GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC-GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC-GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC-GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATCTTTTTT---NTCAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU173775 [AAAGCGCCACCCACCAAGTCCACCAAGGCACCCGCCCCGGCGCCCAAGGCGGCCAAGGCCACCCCGCCGCCGGCCTCGTCTCCCCCGGTCGAGGCTCCCGTCGCGTCGCCTCCTTCCCCCGCCGCCGAGGCGCCCGCCACCATCCCCACCAAGCCCGACGCACCCGCGCCGGCGCCGGCCAAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCCTCGTNCACGGNCGACGCCCCCGGCCCCGCCGGNGACGGTGTCGCCGCCGACTCCACGGGAGCCGCAAGGGAGGACCAGCGTGCAGGCGATCGCGTTCGGCGTGCGCCGTGGCGCTTAGGCCTCG ] [+] EMBL AK062359 [ AAGCCCGACGCACCCGCGCCGGCGCCGGCCAAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCCTCGTCCACGGCCGACGCCCCCGGCCCCGCCGGCGACGGTGTCGCCGCCGACTCCACGGGAGCCGC AGGGAGGACCAGCGTGCAGGCGATCGCG TCGGCGTGCGCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGT ] [+] EMBL AU173774 [ GGGAGGACCAGCGTGCAGGCGATCGCG TCGGCGTGCNCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTCAGATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGANTNATTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCCTGCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTAaaaaa ] [-] EMBL CB967154 [ GGCGATCGCG TCGGCGTGCGCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTAGCTTTGGCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATC ] [+] EMBL AU031179 [ gatccnctG TCGGCGTGCNCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCTTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCNCGTC GATTCTTTTNCGGGACGGGAGGGNGGAGGAGGAGGGACCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTG TAC GCCCNCGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATNGATCTGTNNTCTTTTTTNTNNTCAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA999726 [ GTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTT ] [+] EMBL AU184750 [ CANCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTGCGGGACGGGAGGGAGGAGGAGGAGGGNCCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATCGGCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTNTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATCTTTTTT CTCAAAAAAAAAA ] [+] EMBL AU184742 [ CAACGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGNCCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTACAGCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCAaaaaa ] consensusID : consensus_12076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [AAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCNTCGTCCACGGCCGACGCCCCCGGCCCCNCGNCGAACGGTGTCGCNCGNACTCCACGGGAGCCGCAGGAAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGCGTGGCNTTCGGCCTCGTCGCCCTCNTCGCCTAAGCAAAACNGCGTCGTGCAAGNTGNANGCAACGACGACGACGCAGATNGCAGCGGCCGGTGCGCCCCACNACATTTTNCGCTGTATTTTGCTCGTCGATTCT] [+] EMBL AU031178 [AAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCNTCGTCCACGGCCGACGCCCCCGGCCCCNCGNCGAACGGTGTCGCNCGNACTCCACGGGAGCCGCAGGAAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGCGTGGCNTTCGGCCTCGTCGCCCTCNTCGCCTAAGCAAAACNGCGTCGTGCAAGNTGNANGCAACGACGACGACGCAGATNGCAGCGGCCGGTGCGCCCCACNACATTTTNCGCTGTATTTTGCTCGTCGATTCT] consensusID : consensus_12076#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [ATCGCCCATGCCCCGGGAATTCCTTTGGTTTCCTTNTTTCTTCTTTCTTCTTCTCTCTGCTACGGCCCACGAATAATGACTTNTGCTAAGCTGCTGGCCTGGCCCGCCCCTGGTACTGGTCCCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGGTCATCATCATCATTGATTCATTGTATTTATTCCATCTTGGCCCGGATCATAGATCTGTCATCTTTTTTCTCATCCAAAAAAA] [+] EMBL AU184124 [ATCGCCCATGCCCCGGGAATTCCTTTGGTTTCCTTNTTTCTTCTTTCTTCTTCTCTCTGCTACGGCCCACGAATAATGACTTNTGCTAAGCTGCTGGCCTGGCCCGCCCCTGGTACTGGTCCCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGGTCATCATCATCATTGATTCATTGTATTTATTCCATCTTGGCCCGGATCATAGATCTGTCATCTTTTTTCTCATCCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12076#0 AAAGCGCCACCCACCAAGTCCACCAAGGCACCCGCCCCGGCGCCCAAGGCGGCCAAGGCC 60 consensus_12076#1 ------------------------------------------------------------ consensus_12076#2 ------------------------------------------------------------ consensus_12076#0 ACCCCGCCGCCGGCCTCGTCTCCCCCGGTCGAGGCTCCCGTCGCGTCGCCTCCTTCCCCC 120 consensus_12076#1 ------------------------------------------------------------ consensus_12076#2 ------------------------------------------------------------ consensus_12076#0 GCCGCCGAGGCGCCCGCCACCATCCCCACCAAGCCCGACGCACCCGCGCCGGCGCCGGCC 180 consensus_12076#1 ------------------------------------------------------------ consensus_12076#2 ------------------------------------------------------------ consensus_12076#0 AAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCC 240 consensus_12076#1 ------------------------------------AAGAAGAGCTCCAAGGCCCCCGCC 24 consensus_12076#2 ------------------------------------------------------------ consensus_12076#0 CCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCC 300 consensus_12076#1 CCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCC 84 consensus_12076#2 ---------------------------------------------------------ATC 3 * consensus_12076#0 GCCTCGTNCACGGNCGACGCCCCCGGCCCCGCCGGNGACGGTGTCGCCGCCGACTCCACG 360 consensus_12076#1 GCNTCGTCCACGGCCGACGCCCCCGGCCCCNCGNCGAACGGTGTCGCN-CGNACTCCACG 143 consensus_12076#2 GCCCATGCCCCGGGAATTCCTTTGGTTTCCTTNTTTCTTCTTTCTTCTTCTCTCTGCTAC 63 ** * *** * * ** * * * ** * consensus_12076#0 GGAGCCGCAGGGAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGCCGTGGCGCTCGGC 420 consensus_12076#1 GGAGCCGCAGGAAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGC-GTGGCNTTCGGC 202 consensus_12076#2 GGCCCACGAATAATGACTTNTGC-TAAGCTGCTGGCCTGGCCCGCCC-CTGGTACT-GGT 120 ** * * * *** * * ** * *** ** * *** * ** consensus_12076#0 CTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACG 480 consensus_12076#1 CTCGTCGCCCTCNTCGCCTAAGCAAAACNGCGTCGTGCAA-GNTGNANGCAACGACGACG 261 consensus_12076#2 CCCACTGAGATCATCTACT--TTTAATTTATTTTATGTTG-CTGGTCATCATCATCATTG 177 * * * ** ** ** ** * ** * ** * * * consensus_12076#0 ACGCAGATGGCAGCGGCCGGTGCGCCCC--ACCACATTTTGCGCTGTATTTTGCTCGTCG 538 consensus_12076#1 ACGCAGATNGCAGCGGCCGGTGCGCCCC--ACNACATTTTNCGCTGTATTTTGCTCGTCG 319 consensus_12076#2 ATTCATTGTATTTATTCCATCTTGGCCCGGATCATAGATCTGTCATCTTTTTTCTCATCC 237 * ** ** * *** * * * * * **** *** ** consensus_12076#0 ATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTAGCTTTGGCTTTGGCTTTAC 598 consensus_12076#1 ATTCT------------------------------------------------------- 324 consensus_12076#2 AAAAAAA----------------------------------------------------- 244 * consensus_12076#0 CACTCTCCCAACCACATTTGATGATTGAGCGATCGCCATGCCTCGGATTCTTTTGTTTCT 658 consensus_12076#1 ------------------------------------------------------------ consensus_12076#2 ------------------------------------------------------------ consensus_12076#0 TTCTTCTTCTTCTTCTTCTCTCTGCTACGCCCACGATATGACTCTGCTAGCTGCTGCCTG 718 consensus_12076#1 ------------------------------------------------------------ consensus_12076#2 ------------------------------------------------------------ consensus_12076#0 CCCGCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCA 778 consensus_12076#1 ------------------------------------------------------------ consensus_12076#2 ------------------------------------------------------------ consensus_12076#0 TCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATCTT 838 consensus_12076#1 ------------------------------------------------------------ consensus_12076#2 ------------------------------------------------------------ consensus_12076#0 TTTTNTCAAAAAAAAAAAAAAAAAAAAAAAAA 870 consensus_12076#1 -------------------------------- consensus_12076#2 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||