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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1142 fasta sequence
[ACCCTCTCCAAAAACCCTAGCTTTCCTCCCCCTCGAAACCCCACCACACCACTGCAACGCGTGCGAGCGGCGGCGAGAGGAAGGAGGAGACCGATGGGGCGGCCGTACGCGGTGAAGGGGCGGAAGAAGAAGCGGAAGCTCGACGACGGCGGGGCCTCCCGCGAGCCCCCGGTCGACGAAGAGGCGGCGGAGGAGCTGCCGCCGCCGGAGGGGGTGGAGGAGGAGGAGGGGAAGGAGGAGGACGTGGCGGCGGCGGCGGCGGCCGGGGAGGTTGCTGATGGGCTACCCGTCGTGCCACGGCCGGTGGAC-GGGAAGC-GGCGGCCCGGCGCGATC-TTCGTGC-TCGAGAGGGCC-TGCC-TCGAGGTCGGCAAAGTCGGCAAGACTATGCAAATCCTGAACTCGGATGACCATGCTAATTA-TTTGAGGAAGCAAAACAGGAATCCAGCTGA-TTA-CAGGCC-TGAT-ATCATTCACCAGGCTCTTCTTGC-AATATTTG-ATAGCCCACTAACTAAA-GCTGGGAGG-TTACAAGCTGTTTATGTTAGGACTGAAAAGGGAGTATTGTTTGAAATCAAGCCTTACGTCCGCATGCCACGTACATTCAAACGTTTTTGCGGTTTAATGTCACAATTATTGCAGAAGTTGAGCATTACAGCAGTTGGAAAGCGGGAGAAGCTTCTTAATGTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAAT-CCAGTGACGATGTACCCCTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGATTGACAACGAATACTCAGATGATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAAACATTATGTGAAATTGTTGTGTACTCGCTAGCTAATGCAATTTTGCGGTCTCCTCCCATGCTGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAAACT-CCGGTGGTAATAGTGTTAAAGTTCAATGTTTGTCGCAACAATATGTTACATCT--AAAAAAAAAAA]
[+] EMBL AU083438 [ACCCTCTCCAAAAACCCTAGCTTTCCTCCCCCTCGAAACCCCACCACACCACTGCAACGCGTGCGAGCGGCGGCGAGAGGAAGGAGGAGACCGATGGGGCGGCCGTACGCGGTGAAGGGGCGGAAGAAGAAGCGGAAG TCGACGACGGCGGGGCCTCCCGCGAGCCCCCGGTCGACGAAGAGGCGGCGGAGGAGCTGCCGCCGCCGGAGGGGGTGGAGGAGGAGGAGGGGAAGGAGGAGGACGTGGCGGCGGCGGCGGCGGCCGGGGAGGTTGCTGATGGG TACCCGTCGTGCCACGGCCGGTGGAC GGGAAGC GGCGGCCCGGCGCGATCTTTCGTGCTTCGAGAGGGCCTTNCT TCGAGGTC GCAAAGTCGGCAAGATTATTCAAATCCTTAACTTCGATTACCAT CTAATTATTTTTAGGAAG AAAACA ]
[+] EMBL AU166081 [ GCTTTCCTCCCCCTCGAAACCCCACCACACCACTGCAACGCGTGCGAGCGGCGGCGAGAGGAAGGAGGAGACCGATGGGGCGGCCGTACGCGGTGAAGGGGCGGAAGAAGAAGCGGAA NTCGACGACGGCGGGGCCTCCCGCGAGCCCCCGGTCGACGAAGAGGCGGCGGAGGAGCTGCCGCCGCCGGAGGGGGTGGAGGAGGAGGAGGGGAAGGAGGAGGACGTNGCGGCGGCGGCGGCGGCCGGGGAAGTTTCTGATGGGCTAACCGTCGTNCCAAGGCCGGTGGACGGGGAAGC GGCGGCCCGGCGCGATN TTCGTGC TCCAAANGGCC TTCCTTCGAGGTCGGCAAAATCG ]
[+] EMBL AK101872 [ TCCCCCTCGAAACCCCACCACACCACTGCAACGCGTGCGAGCGGCGGCGAGAGGAAGGAGGAGACCGATGGGGCGGCCGTACGCGGTGAAGGGGCGGAAGAAGAAGCGGAAGCTCGACGACGGCGGGGCCTCCCGCGAGCCCCCGGTCGACGAAGAGGCGGCGGAGGAGCTGCCGCCGCCGGAGGGGGTGGAGGAGGAGGAGGGGAAGGAGGAGGACGTGGCGGCGGCGGCGGCGGCCGGGGAGGTTGCTGATGGGCTACCCGTCGTGCCACGGCCGGTGGAC GGGAAGC GGCGGCCCGGCGCGATC TTCGTGC TCGAGAGGGCC TGCC TCGAGGTCGGCAAAGTCGGCAAGACTATGCAAATCCTGAACTCGGATGACCATGCTAATTA TTTGAGGAAGCAAAACAGGAATCCAGCTGA TTA CAGGCC TGAT ATCATTCACCAGGCTCTTCTTGC AATATTTG ATAGCCCACTAACTAAA GCTGGGAGG TTACAAGCTGTTTATGTTAGGACTGAAAAGGGAGTATTGTTTGAAATCAAGCCTTACGTCCGCATGCCACGTACATTCAAACGTTTTTGCGGTTTAATGTCACAATTATTGCAGAAGTTGAGCATTACAGCAGTTGGAAAGCGGGAGAAGCTTCTTAATGTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAAT CCAGTGACGATGTACCCCTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGATTGACAACGAATACTCAGATGATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAAACATTATGTGAAATTGTTGTGTACTCGCTAGCTAATGCAATTTTGCGGTCTCCTCCCATGCTGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAAACT CCGGTGGTAATAGTGTTAAAGTTCAATTTTTGTCGCA ]
[+] EMBL BP184675 [ TGCGAGCGGCGGCGAGAGGAAGGAGGAGACCGATGGGGCGGCCGTACGCGGTGAAGGGGCGGAAGAAGAAGCGGAAGCTCGACGACGGCGGGGCCTCCCGCGAGCCCCCGGTCGACGAAGAGGCGGCGGAGGAGCTGCCGCCGCCGGAGGGGGTGGAGGAGGAGGAGGGGAAGGAGGATGACTTGGCGGCGGCGGCGGCGGCCGGGGAGGTTGCTGATGGGCTACCCGTCGTGCCACGGCCGGTGGAC GGGAAGCTGGCGGCCCGGCGCGATC TTCGTGC TCGAGAGGGCC TGCC TCGAGGTCGGCAAAGTCGGCAAGACTATGCAAATCCTGAACTCGGATGACCATGCTAATTA TTTGAGGAAGCAAAACAGGAATCCAGCTGA TTA CAGGCC TGAT ATCATTCACCAGGCTCTTCTTGC AATATTTG ATAGCCCACTAACTAAA GCTGGGAGG TTACAAGCTGTTTATGTTAGGACTGAAAAGGGAGTATTGTTTGAAATCAAGCCTTACGTCCGCATGCCACGTACATTCAAACGTTTTTGCGGTTTAATGTCACAATTATTGCAGAAGTTGAGCATTACAGCAGTTGGAAAGCGGGAGAAGCTTCTTAATGTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAAT CCAGTGACGATGTACCCCTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGATTGACAACGAATACTCAGATGATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAAACATTATGTGAAATTGTTGTGTACTCGCTAGCTAATGCAATTTTGCGGTCTCCTCCCATGCTGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAAACTCCCGGTGGTAATAGTGTTAAAGTTCAATGTTTGTCGCAACAATATGTTACATCT AAAAA ]
[+] EMBL AU083439 [ TGATTTACCAGGCCTTGATAATCATTCACCAGGCTCTTCTTGCAAATATTTGAATAGCCNACTAACTAAAGGCTGGGAGGTTTACAAGCTGTTTATGTTAGGACTGAAAAGGGAGTATTGTTTGAAATCAAGCCTTACGTCCGCATGCCACGTACATTCAAACGTTTTTGCGGTTTAATGTCACAATTATTGCAGAAGTTGAGCATTACAGCAGTTGGAAAGCGGGAGAAGCTTCTTAATGTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAAT CCAGTGACGATGTACCCCTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGATTGACAACGAATACTCAGATGATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAAACATTATGTGAAATTGTTGTGTACTCGCTAGCTAATGCAATTTTGCGGTCTCCTCCCATGCTGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAAACT CCGGTGGTAATAGTGTTAAAGTTCAAaaaaa ]
[+] EMBL OSR31911A [ TCTTGC AATATTTG ATAGCCCACTAACTAAA GCTGGGAGG TTACAAGCTGTTTATGTTAGGACTGAAAAGGGAGTATTGTTTGAAATCAAGCCTTACGTCCGCATGCCACGTACATTCAAACGTTTTTGCGGTTTAATGTNACAATTATTGCAGAAGTTGAGCATTACAGCAGTTGGAAAGCGGGAGAAGCTTCTTAATGTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAAT CCAGTGACGATGTACCCCTTGTGTTTGTGGTAGG ]
[+] EMBL AU029592 [ CTTCTTAATGTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAATCCCAGTGACGATGTACCCCTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGATTGACAACGAATACTCAGATGATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAAACATTATGTGAAATTGTTGTGTACTCGCTAGCTAATGCAATTTTGCGGTCTCCTCCCATGCTGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAAACT CCGGTGGTAATAGTGTTAAAGTTCAATGTTTGTCGCAACAATATGTTACATCTTGAAAAAAAAAAA]
consensusID : consensus_12098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 695 fasta sequence
[TGAAATNAGCCTTACGTCCGCATGCCACGTACATTCAAACGTTTTTGCGGTTTAATGTCACAATTATTGCAGAAGTTGAGCATTACAGCAGTTGGAAAGCGGGAGAAGCTTCTTAATGTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAATCCAGTGACGATGTACCCCTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGATTGA-CAACGAATACTCAGAT-GATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAAACATTATGTGAAATTGTTGTGTACTCGCTAGCTAATGCAATTTTGCGGTCTCCTCCCATGCTGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAAACTCCGGTGGTAATAGTGTTAAAGTTCAATGNTTGTCGCAACAATATGTTACATCTTGAGGCATACTGGTGCTTATGATTACCACCAGCCTTGAGCTAGGNTGGTTGAAAACCGAACTGCAACGTTTGTCCTTTGCCCCAAAATTTTACGCTGAGCTGAGATTTACCCGCATTAAAAA]
[+] EMBL CA767228 [TGAAATNAGCCTTACGTCCGCATGCCACGTACATTCAAACGTTTTTGCGGTTTAATGTCACAATTATTGCAGAAGTTGAGCATTACAGCAGTTGGAAAGCGGGAGAAGCTTCTTAATGTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAATCCAGTGACGATGTACCCCTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGATTGA CAACGAATACTCAGAT GATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAAACATTATGTGAAATTGTTGTGTACTCGCTAGCTAATGCAATTTTGCGGTCTCCTCCCATGCTGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAAACTCCGGTGGTAATAGTGTTAAAGTTCAATGNTTGTCGCAACAATATGTTACATCTTGAGGCATACTGGTGCTTATGATTACCACCAGCCTTGAGCTAGGNTGGTTGAA ]
[+] EMBL AU032016 [ ATGGAAAGATTGACCACCGAATACTCNGATGGATTACATNCAAATTTGCAATTCCCCTCTCAGTGCTGCCTGCTGTTTGAANCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAANCATTATGTGAAATTGTTGTGTACTCGCTNGCTAATGCAATTTTGCGGTCTCCTCCCATGCTGAGTGTGTACTGTANTCTGATTGTGGAGACTTGAAAACTCCGGTGGTAATAGTGTTAAAGTTCAATGTTTGTCGCAACAATATGTTACATCTTGAGGCATACTGTTGCTTATGATTACCACCAGCCTTGAGCTAGGTTGGTTGAAAACCGAACTGCAACGTTTGTCCTTTGCCCCAAAATTTTACGCTGAGCTGAGATTTACCCGCATTAAAAA]
[+] EMBL AA750153 [ AATACTCAGAT GATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAAACATTATGTGAAATTGTTGTGTACTCGCTAGCTAATG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12098#0 ACCCTCTCCAAAAACCCTAGCTTTCCTCCCCCTCGAAACCCCACCACACCACTGCAACGC 60
consensus_12098#1 ------------------------------------------------------------
consensus_12098#0 GTGCGAGCGGCGGCGAGAGGAAGGAGGAGACCGATGGGGCGGCCGTACGCGGTGAAGGGG 120
consensus_12098#1 ------------------------------------------------------------
consensus_12098#0 CGGAAGAAGAAGCGGAAGCTCGACGACGGCGGGGCCTCCCGCGAGCCCCCGGTCGACGAA 180
consensus_12098#1 ------------------------------------------------------------
consensus_12098#0 GAGGCGGCGGAGGAGCTGCCGCCGCCGGAGGGGGTGGAGGAGGAGGAGGGGAAGGAGGAG 240
consensus_12098#1 ------------------------------------------------------------
consensus_12098#0 GACGTGGCGGCGGCGGCGGCGGCCGGGGAGGTTGCTGATGGGCTACCCGTCGTGCCACGG 300
consensus_12098#1 ------------------------------------------------------------
consensus_12098#0 CCGGTGGACGGGAAGCGGCGGCCCGGCGCGATCTTCGTGCTCGAGAGGGCCTGCCTCGAG 360
consensus_12098#1 ------------------------------------------------------------
consensus_12098#0 GTCGGCAAAGTCGGCAAGACTATGCAAATCCTGAACTCGGATGACCATGCTAATTATTTG 420
consensus_12098#1 ------------------------------------------------------------
consensus_12098#0 AGGAAGCAAAACAGGAATCCAGCTGATTACAGGCCTGATATCATTCACCAGGCTCTTCTT 480
consensus_12098#1 ------------------------------------------------------------
consensus_12098#0 GCAATATTTGATAGCCCACTAACTAAAGCTGGGAGGTTACAAGCTGTTTATGTTAGGACT 540
consensus_12098#1 ------------------------------------------------------------
consensus_12098#0 GAAAAGGGAGTATTGTTTGAAATCAAGCCTTACGTCCGCATGCCACGTACATTCAAACGT 600
consensus_12098#1 -----------------TGAAATNA-GCCTTACGTCCGCATGCCACGTACATTCAAACGT 42
****** * **********************************
consensus_12098#0 TTTTGCGGTTTAATGTCACAATTATTGCAGAAGTTGAGCATTACAGCAGTTGGAAAGCGG 660
consensus_12098#1 TTTTGCGGTTTAATGTCACAATTATTGCAGAAGTTGAGCATTACAGCAGTTGGAAAGCGG 102
************************************************************
consensus_12098#0 GAGAAGCTTCTTAATGTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAG 720
consensus_12098#1 GAGAAGCTTCTTAATGTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAG 162
************************************************************
consensus_12098#0 AAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAA 780
consensus_12098#1 AAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAA 222
************************************************************
consensus_12098#0 TCCAGTGACGATGTACCCCTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGATTGAC 840
consensus_12098#1 TCCAGTGACGATGTACCCCTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGATTGAC 282
************************************************************
consensus_12098#0 AACGAATACTCAGATGATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGT 900
consensus_12098#1 AACGAATACTCAGATGATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGT 342
************************************************************
consensus_12098#0 TTGAATCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTG 960
consensus_12098#1 TTGAATCGAATATGCAGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTG 402
************************************************************
consensus_12098#0 AAAACGAACACTGAAAAACATTATGTGAAATTGTTGTGTACTCGCTAGCTAATGCAATTT 1020
consensus_12098#1 AAAACGAACACTGAAAAACATTATGTGAAATTGTTGTGTACTCGCTAGCTAATGCAATTT 462
************************************************************
consensus_12098#0 TGCGGTCTCCTCCCATGCTGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAAACTCC 1080
consensus_12098#1 TGCGGTCTCCTCCCATGCTGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAAACTCC 522
************************************************************
consensus_12098#0 GGTGGTAATAGTGTTAAAGTTCAATGTTTGTCGCAACAATATGTTACATCTAAAAAAAAA 1140
consensus_12098#1 GGTGGTAATAGTGTTAAAGTTCAATGNTTGTCGCAACAATATGTTACATCTTGAGGCATA 582
************************** ************************ * * *
consensus_12098#0 AA---------------------------------------------------------- 1142
consensus_12098#1 CTGGTGCTTATGATTACCACCAGCCTTGAGCTAGGNTGGTTGAAAACCGAACTGCAACGT 642
consensus_12098#0 -----------------------------------------------------
consensus_12098#1 TTGTCCTTTGCCCCAAAATTTTACGCTGAGCTGAGATTTACCCGCATTAAAAA 695
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||